Silkworm Genome Informatics Database

Gene

KWMTBOMO01812

Pre Gene Modal

BGIBMGA006163

Annotation

hypothetical_protein_KGM_03116_[Danaus_plexippus]

Location

Bomo_Chr4(+):5471822-5479871 View in EpiBrowser

Full name

Transporter

Location in the cell

Nuclear Reliability : 3.092

CDS

ATGCCTCCAAAACCAAAAGATAACATAAAGAAACCTACTCAGATTGCAACGAGACCTATAATTAGTAATTCCAGCTTACTCCGTATTCCTGAAAATGCAGTAGAAGGTTATCAACAACGTATACTAACAGATATCGATTGGACTCTTTTGGAGAAAGCCTTCCGCCATCACAAACTAAATTGCGAAAGAGTTGAAATTCCCCAGGTCACCCTAAAAGAGGCACTTCAAAAAAAAGTTGAGTCGAGCATACTCCGTGGTTTCCTTGATGAATCTTCCACGCTTACATTGCAAGATCAATGGGAGCTGTTCCTTCCTATCACTTTATGGGAGATTGAAAAATTTGCTAATAGTGAAGGAATGATATGTTTTCAAAATAATAACAGTATCACGAACGATTTGGTGAAACTTATTCGGAAAGCTGTTAAGCTCAATGATCGGGAAATCTTAAGAAAAGAGCTAAAAGCAGTTGACGTGTTGAGAATTAATGAAGCCGAGATAACAAAACTCGACTGCAGCTTAAGAGACTATAAAAACCTGGTAACTTTAACTTTATGCTTGAATTATTTAAAAGACATAGATGCGACTGTAATACCAGAGGGAGTTAGAATACTCGAACTGCAAGCGAATCGAATCAGCAGCGTCGAAGTATTTGCTAAGGATTTACCTACAAATTTACTTTATTTGGGCTTATCAAGAAATTTCATTTCGAATGACGTTGAAAGTCTCGCAAGCTTACCACAAAGTTTGACAGTTCTGGATTTGTCAGACAACGACATCTATAATTTGAATTCAACTTTGGATGTTCTGAAGGAATTATCGAATCTAACGTCGTTGCTACTCGCTGGAAATCCGTGCTCGGGAGCAACAACAACGTTTCACGTGGAATTAGAGCTGCCATTATTAGACTCCAATAGAAGAAACTTCCTGATGTATCACACGAATAAGTCACTGATACAAATGATGCCGCCACCGGAGGATGATATATGGCATATCCCGTCTTCAATGACCACCAGTAAAATTGTCAATCCTGTAAGAGAGGATGAAGCGTCGATACATGAATCTGATATTTACCATCATCTGACTGTGAAGAACTCTCGTCAGATCTGTAACTATACCACATTTGAGAGTAACAAAATACAGTGGAACAAAGTTATGAATTTCCAAGAGCCTACTGTGAAGATATTCTGTCCGGATCTTGTGGCTCTGAGGGATACATTCAGAACTGTTGTCACAATCAAGCTTGTATATACAGTGACCAGTACTGCGAAACAAGGAAAAACAGAGAAGAAAAGCGTGCATTCAATGAAAATGCCAAGTGAGCAAATAGCCGTATTAGCTACCGTAAAATGTTCACTTAGGAACCCGGATTGGAGTCAAATTTCACAGCACTTCCATTGGGACGACACCTTGGGTACTGAAGAAGCAATACACTGGGGCGAGGGCGATCTTACTGCTGTCCAATATAGTCAGGCTCCGGTCAAAACGCCTAAAGGGAAACCGGAAGCCGATGCTGGATCCTCAAGGCAATCTCCTCCAGATAATTTGACTTGTCATTTCGCTTTTGGTATTGAAACATTGCGATTATAA

Protein

MPPKPKDNIKKPTQIATRPIISNSSLLRIPENAVEGYQQRILTDIDWTLLEKAFRHHKLNCERVEIPQVTLKEALQKKVESSILRGFLDESSTLTLQDQWELFLPITLWEIEKFANSEGMICFQNNNSITNDLVKLIRKAVKLNDREILRKELKAVDVLRINEAEITKLDCSLRDYKNLVTLTLCLNYLKDIDATVIPEGVRILELQANRISSVEVFAKDLPTNLLYLGLSRNFISNDVESLASLPQSLTVLDLSDNDIYNLNSTLDVLKELSNLTSLLLAGNPCSGATTTFHVELELPLLDSNRRNFLMYHTNKSLIQMMPPPEDDIWHIPSSMTTSKIVNPVREDEASIHESDIYHHLTVKNSRQICNYTTFESNKIQWNKVMNFQEPTVKIFCPDLVALRDTFRTVVTIKLVYTVTSTAKQGKTEKKSVHSMKMPSEQIAVLATVKCSLRNPDWSQISQHFHWDDTLGTEEAIHWGEGDLTAVQYSQAPVKTPKGKPEADAGSSRQSPPDNLTCHFAFGIETLRL

Similarity

Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.

Uniprot

A0A212FDU1 A0A194PKL4 A0A2A4JIA1 A0A194R293 A0A0L7KQ55 A0A1B6EHG8 + More
D6WKF0

Pubmed

22118469 26354079 26227816 18362917 19820115

EMBL

AGBW02009012 OWR51868.1 KQ459601 KPI93976.1 NWSH01001371 PCG71496.1 + More
KQ460855 KPJ11908.1 JTDY01007455 KOB65186.1 GECZ01032393 JAS37376.1 KQ971342 EFA03982.1

Proteomes

UP000007151 UP000053268 UP000218220 UP000053240 UP000037510 UP000007266 + More

Pfam

PF00209 SNF

Interpro

IPR032675   LRR_dom_sf        + More
IPR000175   Na/ntran_symport
IPR001611   Leu-rich_rpt
IPR037272   SNS_sf

SUPFAM

SSF161070 SSF161070

Gene 3D

3.80.10.10

ProteinModelPortal

A0A212FDU1 A0A194PKL4 A0A2A4JIA1 A0A194R293 A0A0L7KQ55 A0A1B6EHG8 + More
D6WKF0

PDB

5YQ5 E-value=0.0139164, Score=92

KEGG

101743892 no KO assigned | (RefSeq) uncharacterized LOC101743892

GO

GO:0005328 GO:0016021 GO:0005515 GO:0006810 GO:0016020 GO:0000166 GO:0046872 GO:0016459 GO:0006397 GO:0004651 GO:0005634

PANTHER

PTHR11616

Length:

528

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0024

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00217

outside

1 - 528

Pi

224.107986

Theta

157.315786

Tajima's D

1.286934

CLR

0.051697

CSRT

0.738913054347283

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics