Gene

KWMTBOMO01809

Annotation

LIM_domain_transcription_factor_LMO4-B_[Papilio_machaon]

Location

Bomo_Chr4(-):5292946-5335741      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.957

CDS

ATGAACCCGCACTACCACGGGTACGCGGAGCTGAGCTCGCCGCACCCGTCCTCTCCGGAGGCCTCCTTCGCGGCCAACGGGCACGATTATCCACACAACAACAATAACCCGGCGCTAAAGGAATGCGCGGGCTGTGGTGGGAAAATCGTCGAGAGGTTCCTCCTTCACGCCCTAGACAGATACTGGCATCACGGCTGCCTAAAATGCACATGCTGCGGTCAAGCCCTCGCGGACATGGGAAGATCCTTCTATTTCAAGGGTGGGATGATATTATGCAAAAACGATTATACGAGGTAA

Protein

MNPHYHGYAELSSPHPSSPEASFAANGHDYPHNNNNPALKECAGCGGKIVERFLLHALDRYWHHGCLKCTCCGQALADMGRSFYFKGGMILCKNDYTR

Uniprot

A0A194R3T9   A0A194PLW1   A0A2H1WTG3   A0A2A4JAB2   A0A0L7LQU9   A0A2R7W4J4   + More
A0A1B0CYG8   A0A1L8DIV0   A0A1L8DIJ1   A0A1J1IN44   A0A182MZG0   A0A182MSB1   A0A182Q6L5   A0A182W9Z1   A0A0K8SF66   A0A139WIH6   A0A182F113   A0A182YGS1   A0A0K8SF69   A0A182L2D7   A0A182SHZ6   W5JRA4   A0A182P0H3   Q5TQ31   T1EB86   A0A0T6B019   A0A1B6CIM7   A0A182V6H5   A0A182WTI3   A0A182X1M8   A0A182J1L0   U5EZU6   A0A182UA26   A0A1Y1KB82   A0A1S4GX58   A0A1Y1KBK7   A0A2Y9D0T5   B0WGC8   Q17LX6   A0A084WUA8   A0A3Q0JAW7   A0A336LXC3   G5BGG2  

Pubmed

26354079    26227816    18362917    19820115    25244985    26823975    + More
20966253    20920257    23761445    12364791    28004739    17510324    24438588    21993625   

EMBL

KQ460855    KPJ11905.1    KQ459601    KPI93978.1    ODYU01010927    SOQ56343.1    + More
NWSH01002391    PCG68380.1    JTDY01000290    KOB77873.1    KK854324    PTY14654.1    AJVK01000203    GFDF01007820    JAV06264.1    GFDF01007821    JAV06263.1    CVRI01000055    CRL01584.1    AXCM01020782    AXCN02000609    GBRD01013894    GBRD01013891    GBRD01013890    GBRD01010839    JAG51932.1    KQ971342    KYB27651.1    GBRD01013893    GBRD01013892    GDHC01002823    JAG51933.1    JAQ15806.1    ADMH02000699    ETN65284.1    AAAB01008964    EAL39724.3    GAMD01000133    JAB01458.1    LJIG01022461    KRT80453.1    GEDC01023999    JAS13299.1    GANO01000120    JAB59751.1    GEZM01091395    JAV56855.1    GEZM01091394    JAV56856.1    APCN01005206    APCN01005207    DS231925    EDS26887.1    CH477210    EAT47695.2    ATLV01027036    ATLV01027037    ATLV01027038    ATLV01027039    KE525421    KFB53802.1    UFQT01000278    SSX22692.1    JH170189    EHB08373.1   

Proteomes

UP000053240    UP000053268    UP000218220    UP000037510    UP000092462    UP000183832    + More
UP000075884    UP000075883    UP000075886    UP000075920    UP000007266    UP000069272    UP000076408    UP000075882    UP000075901    UP000000673    UP000075885    UP000007062    UP000075903    UP000076407    UP000075880    UP000075902    UP000075840    UP000002320    UP000008820    UP000030765    UP000079169    UP000006813   

Pfam

PF00412   LIM

Interpro

IPR001781   Znf_LIM       

ProteinModelPortal

A0A194R3T9   A0A194PLW1   A0A2H1WTG3   A0A2A4JAB2   A0A0L7LQU9   A0A2R7W4J4   + More
A0A1B0CYG8   A0A1L8DIV0   A0A1L8DIJ1   A0A1J1IN44   A0A182MZG0   A0A182MSB1   A0A182Q6L5   A0A182W9Z1   A0A0K8SF66   A0A139WIH6   A0A182F113   A0A182YGS1   A0A0K8SF69   A0A182L2D7   A0A182SHZ6   W5JRA4   A0A182P0H3   Q5TQ31   T1EB86   A0A0T6B019   A0A1B6CIM7   A0A182V6H5   A0A182WTI3   A0A182X1M8   A0A182J1L0   U5EZU6   A0A182UA26   A0A1Y1KB82   A0A1S4GX58   A0A1Y1KBK7   A0A2Y9D0T5   B0WGC8   Q17LX6   A0A084WUA8   A0A3Q0JAW7   A0A336LXC3   G5BGG2  

PDB

1M3V     E-value=8.48766e-19,     Score=223

KEGG

101743645    no KO assigned | (RefSeq) LIM domain transcription factor LMO4

GO

GO:0046872   GO:0000981   GO:0005634   GO:0016021   GO:0008270   GO:0006812   GO:0016887   GO:0000166   GO:0016459   GO:0006810   GO:0006397   GO:0004651  

Length:

98

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01054

Exp number, first 60 AAs:

9e-05

Total prob of N-in:

0.33225

outside

1  -  98

 

 

Pi

189.445162

Theta

170.247445

Tajima's D

0.010284

CLR

153.386415

CSRT

0.376431178441078

Interpretation

Uncertain