SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01796  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006158
Annotation
prohibitin_protein_WPH_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.726
 

Sequence

CDS
ATGGCTGCACAGCTTTTCAATCGCATTGGGCAAGTCGGTCTAGGCGTGGCATTGGTTGGAGGTGTTGTCAATTCTGCATTGTATAATGTCGACGGTGGTCACAGAGCTGTTATCTTCGATCGATTTGCTGGTGTTAAGCAGCTAGTTGTTGGTGAAGGCACACATTTCTTCATTCCTTGGGTCCAGAGGCCAATTATATTTGACATCAGGTCTCGACCCAGAAATGTTCCTACTATTACTGGAAGTAAAGATCTTCAAAATGTTAACATCACACTTCGTATCCTCTTCAGACCAGTTCCTGATCAATTACCAAGAATTTACACTATTCTTGGTATTGATTATGATGAAAGAGTACTTCCATCTATTACCTCAGAAGTTCTGAAAGCAGTTGTTGCTCAGTTCGATGCTGGAGAACTTATTACACAAAGAGAGATCGTGTCGCAAAAAGTCAATGACAGCCTAACAGAGAGAGCAGCACAATTCGGCCTCATCCTAGACGACATTTCTATCACTCACTTGACCTTCGGAAAGGAATTCACGCAGGCTGTTGAACTGAAACAAGTAGCTCAACAAGAAGCAGAGAAAGCCAGATTCCTTGTAGAGAAAGCTGAACAACAAAAGAAGGCTGCCGTTATTGCTGCAGAGGGAGACGCGCAGGCTGCTGTACTTCTCGCAAAGTCCTTTGGAAGTGCTGGCGAAGGTCTTGTTGAACTTCGTCGTATTGAAGCGGCAGAGGACATTGCTTATCAACTAGCGAAATCACGCAATGTCACTTATCTTCCGCATGGACAAAATGTGCTGCTAAATCTGCCCACACAGAACTAG
Protein
MAAQLFNRIGQVGLGVALVGGVVNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYLPHGQNVLLNLPTQN

Summary

EMBL
BABH01004802    BABH01004803    DQ311431    ABD36375.1    NWSH01000013    PCG80857.1    + More
ODYU01009423    SOQ53837.1    AGBW02013271    OWR43686.1    GAIX01014100    JAA78460.1    KQ460855    KPJ11891.1    KQ459601    KPI93992.1    KK852860    KDR14824.1    GEMB01002799    JAS00399.1    GBBI01000626    JAC18086.1    GBGD01002504    JAC86385.1    GDKW01000848    JAI55747.1    ACPB03008476    GAHY01000606    JAA76904.1    GECL01002193    JAP03931.1    GEBQ01031273    JAT08704.1    GL453780    EFN75536.1    GECU01030131    GECU01007352    GECU01002124    JAS77575.1    JAT00355.1    JAT05583.1    GALX01001159    JAB67307.1    AJVK01068021    KQ971342    EFA03634.1    KB631679    ERL85344.1    LBMM01001222    KMQ96698.1    GECZ01011996    JAS57773.1    KK107455    QOIP01000010    EZA50484.1    RLU17872.1    APGK01038540    BT128532    KB740960    AEE63489.1    ENN77015.1    GANO01001769    JAB58102.1    JX275964    AGG68958.1    GFDF01004132    JAV09952.1    GBHO01034572    GBRD01000177    GDHC01003663    JAG09032.1    JAG65644.1    JAQ14966.1    KQ977279    KYN04193.1    LJIJ01000106    ODN02547.1    GL888218    EGI64497.1    KQ976618    KYM79205.1    DS231951    EDS28645.1    GDIP01057465    GDIQ01036836    LRGB01002384    JAM46250.1    JAN57901.1    KZS08000.1    NEVH01016296    PNF26052.1    EDS28646.1    ADTU01008827    GGMS01002621    MBY71824.1    GFDL01010498    JAV24547.1    AY093954    AAM29179.1    GGMR01002685    MBY15304.1    MF583045    GL732565    AWX48894.1    EFX77060.1    KQ981382    KYN42211.1    GL764888    EFZ17099.1    GFXV01005295    GFXV01007269    MBW17100.1    MBW19074.1    GL437918    EFN69844.1    DQ440281    CH477575    ABF18314.1    EAT38806.1    ABLF02037784    DQ413214    ABD72682.1    JXUM01146429    KQ570172    KXJ68431.1    GEZM01028226    GEZM01028225    JAV86365.1    GEDC01010696    JAS26602.1    CAQQ02127105    CAQQ02127106    CAQQ02127107    GEDC01008566    JAS28732.1    NNAY01000838    OXU26250.1    GDIP01179794    JAJ43608.1    GBYB01002705    JAG72472.1    AXCM01001945    GEFM01003158    JAP72638.1    AAAB01008835    EAA05785.3    LNIX01000002    MH800059    OXA60198.1    QBH74217.1    GAMC01003003    JAC03553.1    GAKP01003136    JAC55816.1    GDHF01018560    GDHF01004594    GDHF01004372    JAI33754.1    JAI47720.1    JAI47942.1    GBXI01009351    JAD04941.1    GFPF01010785    MAA21931.1    GEDV01006745    JAP81812.1    GACK01007022    JAA58012.1    GEFH01004259    JAP64322.1    KA647575    AFP62204.1    UFQS01000281    UFQT01000281    SSX02368.1    SSX22743.1    GADI01006945    JAA66863.1    GGFJ01008298    MBW57439.1    ADMH02001356    ETN62887.1    ATLV01014579    KE524975    KFB39052.1    KQ414646    KOC66502.1    GGFM01004011    MBW24762.1    GGFJ01008166    MBW57307.1    GAMD01001136    JAB00455.1    HQ588351    ADT92002.1    GGFK01003908    MBW37229.1    CVRI01000037    CRK93448.1    GFWV01022546    MAA47273.1    GGLE01001307    MBY05433.1    GFDG01001767    JAV17032.1    GGFL01000514    MBW64692.1    GGFK01003912    MBW37233.1    APCN01004213    GGFL01000508    MBW64686.1   
Pfam
PF01145   Band_7        + More
PF05008   V-SNARE
Interpro
IPR001107   Band_7        + More
IPR036013   Band_7/SPFH_dom_sf       
IPR000163   Prohibitin       
IPR038407   v-SNARE_N_sf       
IPR010989   SNARE       
IPR007705   Vesicle_trsprt_v-SNARE_N       
IPR000727   T_SNARE_dom       
SUPFAM
SSF117892   SSF117892        + More
SSF47661   SSF47661       
Gene 3D

Ontologies

Topology

Length:
274
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
7.88198999999999
Exp number, first 60 AAs:
7.85917
Total prob of N-in:
0.35719
outside
1  -  274
 
 

Population Genetic Test Statistics

Pi
161.725336
Theta
154.149316
Tajima's D
0.088565
CLR
150.377246
CSRT
0.392180390980451
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 IGQVGLGVALVGGVVNSALYNVDGGHR 100.00 5e-08
28556443 IYTILGIDYDER 100.00 5e-08
28556443 PIIFDIR 100.00 4e-07
28556443 VLPSITSEVLK 100.00 4e-07
28556443 PVPDQLPR 100.00 0.001
28556443 VVSQHSTILAPIAVQAIR 100.00 0.001
28556443 AVVAQFDAGELITQR 100.00 0.002
28556443 AVVAQFDAGELITQR 100.00 0.002
28556443 AAVIAAEGDAQAAVLLAK 100.00 0.002
28556443 AAVIAAEGDAQAAVLLAK 100.00 0.002
28556443 IEAAEDIAYQLAK 100.00 0.007
28556443 IEAAEDIAYQLAK 100.00 0.007
28556443 PIIFDIR 100.00 0.014
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