Gene

KWMTBOMO01794

Pre Gene Modal

BGIBMGA006156

Annotation

PREDICTED:_transcription_factor_Sox-2_[Bombyx_mori]

Location

Bomo_Chr4(+):4963042-4965546      View in EpiBrowser

Transcription factor

HMG

Location in the cell

Nuclear   Reliability : 1.557 PlasmaMembrane   Reliability : 4.179

CDS

ATGCTTCCTAATAAACAAATTCAGATTGTAAACAAACTAAAATTGCCCTTTGGAATCGGCAAGCTGTACGCGCCGCAGGAAGACGACATGCTGACGATGGAGACGGATCTCAAAGGCGGCAGCCTTCACGCAACGGTGCCGCCGCACCATGCACTCCAGCACGGCTATGGGTCGCTGGGTGCGCTCGGCGGCATGATGGCTCTACCACAGCAGCAGCCCCTCGGACAACATCAGCCACTACAGCACCAGCATCACCAGCAACTGACCCAGCATCACGCGCCGCCTCAGCAACAACACCATCAAACACCTAACAACAATAACAATAACACTAGCAAAAATTCCAATGCCGAACGTGTTAAACGTCCGATGAACGCATTCATGGTGTGGTCGCGCGGGCAACGCAGGAAAATGGCTTCGGATAATCCGAAAATGCACAATTCTGAAATATCTAAAAGGCTCGGTGCTCAATGGAAAGACCTTTCTGAGTCAGAGAAGCGACCGTTCATTGATGAAGCGAAAAGACTTCGCGCCGTTCACATGAAAGAACATCCTGACTACAAATACAGGCCTAGGAGGAAGACGAAGACCCTGGCTAAAAAACAAGAAAAATACCCACTCGGTGGAGGCGGATTATTGGGAGCCACCGAGGCACAGAGGTCAGCCGCGCCAACGGCACAACAACCCCGCGACGTTTATCAAATGACACCAAACGGTTACATGCCCAACGGATATATGATGCACGACCCCAGTGCGTATCAACAACAAGCATATGGATATCCTCGCTACGATGTATCACAGATGCAACAGGGAGGCTACGGCGGAGGCTACTATGGCGGCGGCGGGCAAGGGTCGCCATATCTCCCTCAACCGCCATCACCTTCGGCATACGCGCTGGGTCCGGGATCGCCGGGCGGGTATGCATTGCCGCCGTCGTGCGCGTCACACTCTCCCAGCGGGTCGTCGGCCAAGTCGGAACCGGTGTCTCCGGGTCCGCCAGGAATGAAGCGCGAGTTTATTAGCCACGAGCCACCGGCGCAGCTCAAACGCGAGTTCCCGCCGCACCCCCAGAGCCACGAGCAGATGACAATGAAACGCGAGTACGGACAACAGGACTTGAGCCACATCATCAACATGTACCATGTGCCTGATGAGCAGCGGTACGCCGCCGTCGGGGAGCGCACGATGCCGCTCATCTGA

Protein

MLPNKQIQIVNKLKLPFGIGKLYAPQEDDMLTMETDLKGGSLHATVPPHHALQHGYGSLGALGGMMALPQQQPLGQHQPLQHQHHQQLTQHHAPPQQQHHQTPNNNNNNTSKNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLAKKQEKYPLGGGGLLGATEAQRSAAPTAQQPRDVYQMTPNGYMPNGYMMHDPSAYQQQAYGYPRYDVSQMQQGGYGGGYYGGGGQGSPYLPQPPSPSAYALGPGSPGGYALPPSCASHSPSGSSAKSEPVSPGPPGMKREFISHEPPAQLKREFPPHPQSHEQMTMKREYGQQDLSHIINMYHVPDEQRYAAVGERTMPLI

Uniprot

A0A194R3S3   A0A194PMN5   A0A3G1T1D7   S4PI85   A0A2A4K9V6   A0A212EQC7   + More
H9J9G3   A0A2H1WGE0   A0A0L7KWF4   A0A182GPA7   A0A182GV54   A0A0K8UTR2   U5EIT9   Q17NV3   A0A1Q3EWV8   A0A1J1IEC9   A0A1S4EWA8   A0A1Q3EWM4   A0A034V1Q5   A0A0P6IMI7  

Pubmed

26354079    23622113    22118469    19121390    26227816    26483478    + More
17510324    25348373   

EMBL

KQ460855    KPJ11890.1    KQ459601    KPI93994.1    MG992369    AXY94807.1    + More
GAIX01005495    JAA87065.1    NWSH01000013    PCG80859.1    AGBW02013271    OWR43688.1    BABH01004795    BABH01004796    ODYU01008458    SOQ52087.1    JTDY01004947    KOB67568.1    JXUM01014901    KQ560416    KXJ82519.1    JXUM01019021    KQ560530    KXJ81968.1    GDHF01022333    JAI29981.1    GANO01002497    JAB57374.1    CH477196    EAT48371.1    GFDL01015279    JAV19766.1    CVRI01000047    CRK98568.1    GFDL01015369    JAV19676.1    GAKP01022498    JAC36454.1    GDIQ01004274    JAN90463.1   

Proteomes

UP000053240    UP000053268    UP000218220    UP000007151    UP000005204    UP000037510    + More
UP000069940    UP000249989    UP000008820    UP000183832   

PRIDE

H9J9G3   

Pfam

PF12336   SOXp        + More
PF00505   HMG_box
PF07684   NODP
PF12796   Ank_2
PF00066   Notch
PF06816   NOD

Interpro

IPR009071   HMG_box_dom        + More
IPR022097   SOX_fam       
IPR036910   HMG_box_dom_sf       
IPR010660   Notch_NOD_dom       
IPR035993   Notch-like_dom_sf       
IPR011656   Notch_NODP_dom       
IPR020683   Ankyrin_rpt-contain_dom       
IPR036770   Ankyrin_rpt-contain_sf       
IPR000800   Notch_dom       
IPR002110   Ankyrin_rpt       

SUPFAM

SSF47095   SSF47095        + More
SSF48403   SSF48403       
SSF90193   SSF90193       

Gene 3D

1.10.30.10     1.25.40.20    

CDD

cd00204  ANK

ProteinModelPortal

A0A194R3S3   A0A194PMN5   A0A3G1T1D7   S4PI85   A0A2A4K9V6   A0A212EQC7   + More
H9J9G3   A0A2H1WGE0   A0A0L7KWF4   A0A182GPA7   A0A182GV54   A0A0K8UTR2   U5EIT9   Q17NV3   A0A1Q3EWV8   A0A1J1IEC9   A0A1S4EWA8   A0A1Q3EWM4   A0A034V1Q5   A0A0P6IMI7  

PDB

1O4X     E-value=5.23328e-32,     Score=344

KEGG

101742221    no KO assigned | (RefSeq) transcription factor Sox-2

GO

GO:0005634   GO:0003677   GO:0006355   GO:0030154   GO:0007219   GO:0007275   GO:0016021   GO:0005524   GO:0006468   GO:0005515   GO:0003774   GO:0016459   GO:0006810   GO:0006397   GO:0004651  

Length:

398

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00363

Exp number, first 60 AAs:

0.00216

Total prob of N-in:

0.00859

outside

1  -  398

 

 

Pi

257.450653

Theta

200.24182

Tajima's D

0.924425

CLR

0

CSRT

0.64116794160292

Interpretation

Uncertain