Gene

KWMTBOMO01780

Annotation

PREDICTED:_integrin_beta-PS-like_[Bombyx_mori]

Location

Bomo_Chr4(+):4478289-4480827      View in EpiBrowser

Full name

Integrin beta      

Location in the cell

Extracellular   Reliability : 1.427 Nuclear   Reliability : 1.617

CDS

ATGAATAGCAGTGATTCGCTTGAAGACCCTTTGGAACCGAGTTGGAATTTATGCCCAGAACTGAGGATGGAAAACGGCTGCTATACGACTTTTGCATATAAATATCAAGATGGTTACGGGATCGAATTATTGATACAGAAAAACAAGAATTGCGATGAGAATATTTTAAAGCTGGGCGTGATAGTATCTGTAACCGTCATCTTGGTAGGGATCGGAACATTGGTTGTTTGGAAATTGATGACGAAGTATCACGACAGGAAGGAGTACATGGAACTGATGAAACAGTACAATCCAGATCAAGGGGCCCGTACCAATAAGCTGTACATAGATCCATGTGTGACTTTCAAGAATCCGTCTTATAGAGCGGATCCTATTACGGAAAGCTAG

Protein

MNSSDSLEDPLEPSWNLCPELRMENGCYTTFAYKYQDGYGIELLIQKNKNCDENILKLGVIVSVTVILVGIGTLVVWKLMTKYHDRKEYMELMKQYNPDQGARTNKLYIDPCVTFKNPSYRADPITES

Similarity

Belongs to the integrin beta chain family.

Feature

chain  Integrin beta

Uniprot

A0A076JP59   A0A2H1V7X1   A0A2A4IXQ7   A0A212FB70   A0A194R3R5   A0A194PKP6   + More
V9I2Y6   A0A3G5MWV8   A0A182HIV0   N6SYT4   A0A1B6JV91   A0A182XDN2   A0A182STS0   D6X0D6   A0A182M2H6   H9JBI3   S4PCV3   A0A076JVB8   D1MBK3   A0A2P2I7V9   A0A182KEI3   A0A1E1WNR2   A0A0P5WWD4   A0A2M4BIB1   A0A1Z5L8Z7   A0A1Y1KQM0   A0A0P5WC53   I4DPR3   A0A0P5WG12   A0A0K2UQU2   A0A2A4K6E0   A0A2M4BDW1   A0A2M4BDV9   A0A023UG44   A0A164YYE1   A0A2M4BIS4   A0A0N8B5P6   A0A0P5EN75   A0A194RCN7   A0A2M4BI31   A0A0P5IU01   A0A0P4Y6Q1   A0A0P6AIE1   E9GI17   A0A182PFW1   A0A0P5EIN5   A0A1Y1KLF1   U4USQ6   A0A1Y1KR32   D6WK71   A0A194PEH3   A2TIK8   A0A2M4ACS8   A0A2M4ACZ9   A0A0P5HS47   A0A2M4A9A0   A0A2M4A9N8   A0A182IJP6   A0A182YH54   A0A084VH17   T1GNV7   A0A0P4YNI8   A0A182RHJ6   A0A182W5K9   A0A212EPU0   X2BBV3   A0A2H1WGL4   A0A2M4CU05   F8TAD6   A0A182FIP7   A0A2M4CU18   A0A182Q0X5   T1DSJ7   A0A2M3ZGX5   A0A0G3BIA0   W8C804   W5JJT5   A0A3Q0JA47   A0A2P2I2S2   A0A034VPD2   A0A1I8PFU3   D1MCA9   A0A1S3IPR8   Q95P95   Q86G85   A0A210Q5V9   A0A076JQI1   D1MBK4   E2B5Z7   A0A0C9PS78   K9JDL3   P91774   B4Q0N6   A0A0R1EBH1   A0A336KMF2   E0W1M5   Q7QE55   A0A182V657   Q9NAS7  

Pubmed

25064490    22118469    26354079    23537049    18362917    19820115    + More
19121390    23622113    28528879    28004739    22651552    21292972    20708011    25244985    24438588    23254933    21856307    26004499    24495485    20920257    23761445    25348373    22792387    12697309    15990346    16442158    12974949    28812685    20798317    9062999    17994087    17550304    20566863    12364791    14747013    17210077    11437913   

EMBL

KJ511856    AII79415.1    ODYU01001118    SOQ36886.1    NWSH01005801    PCG63940.1    + More
AGBW02009374    OWR50969.1    KQ460855    KPJ11880.1    KQ459601    KPI94006.1    HQ260916    AEN94570.1    MH170220    AYX40719.1    APCN01004101    APGK01059069    APGK01059070    APGK01059071    APGK01059072    KB741292    ENN70393.1    GECU01004581    JAT03126.1    KQ971372    EFA10689.2    AXCM01014002    AXCM01014003    BABH01030933    BABH01030934    GAIX01005247    JAA87313.1    KJ511854    AII79413.1    GU129932    ACY74431.1    IACF01004524    LAB70113.1    GDQN01007634    GDQN01002429    JAT83420.1    JAT88625.1    GDIP01080635    JAM23080.1    GGFJ01003550    MBW52691.1    GFJQ02003302    JAW03668.1    GEZM01076841    JAV63604.1    GDIP01088141    JAM15574.1    AK403732    BAM19903.1    GDIP01087138    JAM16577.1    HACA01023064    CDW40425.1    NWSH01000130    PCG79230.1    GGFJ01002056    MBW51197.1    GGFJ01002095    MBW51236.1    KJ462516    AHY00655.1    LRGB01000868    KZS15734.1    GGFJ01003577    MBW52718.1    GDIQ01245981    GDIQ01227794    GDIQ01210291    GDIQ01207807    GDIQ01206458    GDIQ01203248    GDIQ01191690    GDIQ01132238    GDIQ01113476    GDIP01089236    JAK41434.1    JAM14479.1    GDIQ01269713    JAJ82011.1    KQ460398    KPJ15040.1    GGFJ01003578    MBW52719.1    GDIP01253007    GDIQ01269714    GDIQ01227795    GDIQ01227793    GDIQ01225644    GDIQ01210290    GDIQ01191691    JAI70394.1    JAK41435.1    GDIP01231880    JAI91521.1    GDIP01030205    JAM73510.1    GL732545    EFX80954.1    GDIQ01270948    JAJ80776.1    GEZM01080428    JAV62144.1    KB632349    ERL93211.1    GEZM01080427    JAV62145.1    KQ971342    EFA03618.2    KQ459606    KPI91428.1    EF202843    ABM91320.1    GGFK01005275    MBW38596.1    GGFK01005281    MBW38602.1    GDIQ01229031    JAK22694.1    GGFK01003991    MBW37312.1    GGFK01004007    MBW37328.1    ATLV01013123    KE524840    KFB37261.1    CAQQ02145466    CAQQ02145467    GDIP01224722    JAI98679.1    AGBW02013402    OWR43484.1    AMQN01000124    ODYU01008525    SOQ52209.1    GGFL01004658    MBW68836.1    HQ829425    ADW20295.1    GGFL01004659    MBW68837.1    AXCN02002227    GAMD01001449    JAB00142.1    GGFM01007066    MBW27817.1    KP795392    AKJ26284.1    GAMC01000222    JAC06334.1    ADMH02000934    ETN64637.1    IACF01002654    LAB68299.1    GAKP01014633    JAC44319.1    GU131148    ACY82398.1    AB066348    BAB62173.1    AY237588    AAO85806.1    NEDP02004918    OWF44108.1    KJ511855    AII79414.1    GU129933    ACY74432.1    GL445900    EFN88858.1    GBYB01004213    JAG73980.1    GQ889365    ADK56123.1    X98852    CAA67357.1    CM000162    EDX02307.1    KRK06701.1    UFQS01000673    UFQT01000673    SSX06026.1    SSX26383.1    DS235872    EEB19531.1    AAAB01008847    EAA06838.2    AJ292755    CAC00630.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000053268    UP000075840    UP000019118    + More
UP000076407    UP000075901    UP000007266    UP000075883    UP000005204    UP000075881    UP000076858    UP000000305    UP000075885    UP000030742    UP000075880    UP000076408    UP000030765    UP000015102    UP000075900    UP000075920    UP000069272    UP000075886    UP000000673    UP000079169    UP000095300    UP000085678    UP000242188    UP000008237    UP000002282    UP000009046    UP000007062    UP000075903   

PRIDE

H9JBI3    D1MBK3    D1MBK4   

Pfam

PF00362   Integrin_beta        + More
PF07974   EGF_2
PF08725   Integrin_b_cyt
PF18372   I-EGF_1
PF07965   Integrin_B_tail
PF17205   PSI_integrin

Interpro

IPR015812   Integrin_bsu        + More
IPR036465   vWFA_dom_sf       
IPR002369   Integrin_bsu_VWA       
IPR002035   VWF_A       
IPR013111   EGF_extracell       
IPR014836   Integrin_bsu_cyt_dom       
IPR040622   I-EGF_1       
IPR036349   Integrin_bsu_tail_dom_sf       
IPR032695   Integrin_dom_sf       
IPR012896   Integrin_bsu_tail       
IPR033760   Integrin_beta_N       
IPR027071   Integrin_beta-1       
IPR027068   Integrin_beta-3       
IPR013032   EGF-like_CS       
IPR000742   EGF-like_dom       

SUPFAM

SSF53300   SSF53300        + More
SSF69687   SSF69687       
SSF69179   SSF69179       

Gene 3D

3.40.50.410    

ProteinModelPortal

A0A076JP59   A0A2H1V7X1   A0A2A4IXQ7   A0A212FB70   A0A194R3R5   A0A194PKP6   + More
V9I2Y6   A0A3G5MWV8   A0A182HIV0   N6SYT4   A0A1B6JV91   A0A182XDN2   A0A182STS0   D6X0D6   A0A182M2H6   H9JBI3   S4PCV3   A0A076JVB8   D1MBK3   A0A2P2I7V9   A0A182KEI3   A0A1E1WNR2   A0A0P5WWD4   A0A2M4BIB1   A0A1Z5L8Z7   A0A1Y1KQM0   A0A0P5WC53   I4DPR3   A0A0P5WG12   A0A0K2UQU2   A0A2A4K6E0   A0A2M4BDW1   A0A2M4BDV9   A0A023UG44   A0A164YYE1   A0A2M4BIS4   A0A0N8B5P6   A0A0P5EN75   A0A194RCN7   A0A2M4BI31   A0A0P5IU01   A0A0P4Y6Q1   A0A0P6AIE1   E9GI17   A0A182PFW1   A0A0P5EIN5   A0A1Y1KLF1   U4USQ6   A0A1Y1KR32   D6WK71   A0A194PEH3   A2TIK8   A0A2M4ACS8   A0A2M4ACZ9   A0A0P5HS47   A0A2M4A9A0   A0A2M4A9N8   A0A182IJP6   A0A182YH54   A0A084VH17   T1GNV7   A0A0P4YNI8   A0A182RHJ6   A0A182W5K9   A0A212EPU0   X2BBV3   A0A2H1WGL4   A0A2M4CU05   F8TAD6   A0A182FIP7   A0A2M4CU18   A0A182Q0X5   T1DSJ7   A0A2M3ZGX5   A0A0G3BIA0   W8C804   W5JJT5   A0A3Q0JA47   A0A2P2I2S2   A0A034VPD2   A0A1I8PFU3   D1MCA9   A0A1S3IPR8   Q95P95   Q86G85   A0A210Q5V9   A0A076JQI1   D1MBK4   E2B5Z7   A0A0C9PS78   K9JDL3   P91774   B4Q0N6   A0A0R1EBH1   A0A336KMF2   E0W1M5   Q7QE55   A0A182V657   Q9NAS7  

PDB

4UM8     E-value=7.1772e-07,     Score=120

KEGG

101744875    no KO assigned | (RefSeq) integrin beta-PS-like

GO

GO:0007155   GO:0007229   GO:0016021   GO:0008305   GO:0038023   GO:0007160   GO:0070527   GO:0005178   GO:0009986   GO:0033627   GO:0005925   GO:0016477   GO:0034446   GO:0042734   GO:0045211   GO:0008360   GO:0030336   GO:0048803   GO:0043034   GO:0045214   GO:0030425   GO:0007608   GO:0007419   GO:0090129   GO:0007411   GO:0030718   GO:0005927   GO:0009925   GO:0008340   GO:0007391   GO:0035001   GO:0051492   GO:0046982   GO:0006930   GO:0003344   GO:1990430   GO:0007431   GO:0007377   GO:0016203   GO:0035099   GO:0016328   GO:0007298   GO:0021551   GO:0007015   GO:0035160   GO:0007508   GO:0031252  

PANTHER

PTHR10082   PTHR10082:SF28   PTHR10082:SF25  

Subcellular location

Membrane  

Length:

128

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.23468

Exp number, first 60 AAs:

4.19147

Total prob of N-in:

0.16302

outside

1  -  54

TMhelix

55  -  77

inside

78  -  128

 

 

Pi

212.910299

Theta

20.876249

Tajima's D

0.710738

CLR

0.47998

CSRT

0.587820608969552

Interpretation

Uncertain