Gene

KWMTBOMO01778

Pre Gene Modal

BGIBMGA006002

Annotation

integrin_beta2_[Bombyx_mori]

Location

Bomo_Chr4(-):4464031-4470348      View in EpiBrowser

Full name

Integrin beta      

Location in the cell

PlasmaMembrane   Reliability : 4.894

CDS

ATGCTTTATAAACCTATAGAGCATTTCCCGCTCGATGTTTATTTTCTCATGGATAACTCTTATACTATGAGACAATTTCAGAACGAACTAAAATCACAGGCTATTAATATTTTGAAAGAATTAAGTGCTTTCACAAAGAATGTTCGATTGGGATTCGGAACCTTTGTAGAAAAACCAGTTTATCCATATTACGATAAAAACAGATACCAAAAGTCCATACCGTTTGAAAATGTATTATCCTTAACGGCAGACATATCGAAATTGAACAACACAGTTCGCCAAATCGATTTTGGTTCAAATTTCGATGACCAAGAAGCTGGCTTAGATGCTCTGATGCAGGTTATGACCTGCACCAAAGAAATAGGGTGGCGAACAGAAGCAAGACGTATTATAGTACTCTTCACTGACGCGCCGTATCATAGTATGGGAGACGGTAAAATGATCGGCATATTAAAACCGAATGATATGGAATGCCACCTAAAAGATAATATTTATGACGATACAGCAACGACACAAGATTACCCGTCTGTAAGCCAGATAAATAAAGTAGCAACAGAAAGAAATTTCAAAATCATATTTGCTACTATTGAAAGGGTATCCGAGGTTTACAAAGAATTGTCAAATGCAATACTAGGATCAGAAACAGCAATTTTAATTAAAAAAGAGGAAGGGGAGTCAAATATTGTGCCTATAATTAAAACTGCCTATTTGGAAGCCGAAAGTGTTGTAAGGCTAGTATCTGATTTTCCAAGTTCAGTTAATGTCAAGTATAGTCCGGATTGCAATGAAATTGAAAAGAAAAATTGCAGAAGTACACATTTAAATCCCATTGTAGAAATAAATGTTACAATAGTTGCTGGATCGTGTCTCGATGGAAATTCTTCTAGAGTCTTTAAAATAAGTCCGCATGGTCTTCATGATATTGACGTAGGTGTTGAGTTAGAGGTTGACTGTCAATGTGAATGCGAGAAGGTAAAAAAAGAGAAGAGTCCCGTTTGTTTTAATGCTGCGTATTTATTGTGCGGTGTATGCATCTGTGACAGTGACAGTAAGGGATCAAACGTGGCCGAAGATTTGGAAAGCCCTCACTGTAGATATCATGGACAATACGTTTGCGGCCGTTGTATTTGTAAGCCCGGATATTCAGGTGACACGTGCGAATATGATGATAATTTGTGTATGAGTAACTGCAAAAAGGGAACATGCTATATGGGTAAATGTAATTGTCAAGAGGGCTGGTCGCCTCCGAACTGTATGTGTCCTGTAAGCAACAAAGATTGCATAGCGCCGTGGTCAGACGAGAATGAGGTTTGCTTCGGCAACGGGGAATGTAAATGTGGAGAATGTTCCTGTGATAAAGTTAGCGGCAAAAATGAATCGTATTTCGGCACATTCTGCGACTTATGCACTGATTGCGCCGCAAAATACTGTAAAAAATATGAAGACTACGTATATTGTAATTACTTGAACGAAAAGGCGTTTTGTGATCAATCATTCTTGAACGGAAAGGACACGGTTGTTAAGATTGTTAATTCAACGGAAATCATAAATGATAACATTCAAAAGGCTACTTGGTGTGCCAAGCTATTGGATAACGGAACATCGATTGTGTTCAAATACCACCACGAGGACAATAAACTTTTTTTGACTATACAAAAGGAAAAGCAGATACCGCCTAAAGCTAATTTATATATTGTTGTGGGTAGTGTGATCTCTGCTATTGTATTGATTGGCTTGCTGACTCTCATCGGATGGAAGGTTTTAACAGATATCTACGATCAAAGGGAATACAGGAAAGTGGAAGAAGCGGCCAAAGCCGCCGGCTTTGATGTTTCAAATCCTTGTTACGAAAACCCGACTACAGAATTTCCGAACCCATCTTACAGACCTACGAAATAA

Protein

MLYKPIEHFPLDVYFLMDNSYTMRQFQNELKSQAINILKELSAFTKNVRLGFGTFVEKPVYPYYDKNRYQKSIPFENVLSLTADISKLNNTVRQIDFGSNFDDQEAGLDALMQVMTCTKEIGWRTEARRIIVLFTDAPYHSMGDGKMIGILKPNDMECHLKDNIYDDTATTQDYPSVSQINKVATERNFKIIFATIERVSEVYKELSNAILGSETAILIKKEEGESNIVPIIKTAYLEAESVVRLVSDFPSSVNVKYSPDCNEIEKKNCRSTHLNPIVEINVTIVAGSCLDGNSSRVFKISPHGLHDIDVGVELEVDCQCECEKVKKEKSPVCFNAAYLLCGVCICDSDSKGSNVAEDLESPHCRYHGQYVCGRCICKPGYSGDTCEYDDNLCMSNCKKGTCYMGKCNCQEGWSPPNCMCPVSNKDCIAPWSDENEVCFGNGECKCGECSCDKVSGKNESYFGTFCDLCTDCAAKYCKKYEDYVYCNYLNEKAFCDQSFLNGKDTVVKIVNSTEIINDNIQKATWCAKLLDNGTSIVFKYHHEDNKLFLTIQKEKQIPPKANLYIVVGSVISAIVLIGLLTLIGWKVLTDIYDQREYRKVEEAAKAAGFDVSNPCYENPTTEFPNPSYRPTK

Similarity

Belongs to the integrin beta chain family.

Feature

chain  Integrin beta

Uniprot

A0A076JQI1   D1MBK4   H9J910   Q66PY4   A0A2A4IWA0   A0S6A3   + More
A0A194PMP9   A0A212FB66   A0A194R7M9   A0A0L7KWJ3   E0D5F3   A0A158NE45   E9JBK8   A0A195BPC3   E2A0M9   F4W856   A0A195EYJ7   A0A195D7K9   A0A0J7L3M3   A0A151X462   Q95P95   A0A084VH17   K7IP94   A0A1B6GQB5   A0A3Q0JA47   A0A1S3I615   A0A1S3JZW7   A0A2A3ECL4   A0A182PFW1   A0A182IJP6   A0A182XDN2   A0A2A4K6E0   A0A182HIV0   A0A087ZTR1   A0A067QK14   A0A154PGR4   A0A232F1V4   H9JBI3   A0A023UG44   A0A076JVB8   D1MBK3   A0A336KRK3   A0A0P5EN75   A0A182W5K9   A0A1W4WXC9   A0A182YH54   V9I2Y6   A0A182RHJ6   A0A0N8B5P6   A0A1Y1KQM0   A0A2M4BDV9   A0A2M4BDW1   A0A0P5IU01   A0A336MVT2   A0A182Q0X5   A0A2M4CU18   A0A2M4CU05   C6KE04   A0A1S3I8E3   D6X0D6   A0A3L8DYQ0   A0A026W443   A0A1Z5L7T6   A0A2H1WGL4   F8TAD6   D6WK71   A0A1E1WNR2   E9GI17   A0A164YYE1   A0A2D3E2V7   A0A212EPU0   A0A3P6TGD1   A0A1A9X588   A0A0G3BIA0   A0A336M8L1   A0A1A9UUR6   A0A0K8UTI8   A0A182TIH0   A0A1A9X8U0   A0A1B0AX62   B4JNC9   A0A1S3IPR8   A0A1I8PFU3   A0A336MBS4   A0A182V657   Q7QE55   Q16M01   Q86G85   A0A1S4FW80   X2BBV3   A0A034V7S9   A0A0P6IR12   A0A0A1WKS8   Q9NAS7   E0VEZ0   A0A2A3E010   L7M1I1   A0A1B6MUI8   A0A069DXI6   A0A1I8PZ80  

Pubmed

25064490    19121390    15804572    26354079    22118469    26227816    + More
21347285    21282665    20798317    21719571    12697309    15990346    16442158    24438588    20075255    24845553    28648823    25244985    28004739    18362917    19820115    30249741    24508170    28528879    21856307    21292972    26004499    17994087    12364791    14747013    17210077    17510324    12974949    23254933    25348373    25830018    11437913    20566863    25576852    26334808   

EMBL

KJ511855    AII79414.1    GU129933    ACY74432.1    BABH01004742    BABH01004743    + More
AY630342    AAU11316.1    NWSH01005801    PCG63939.1    DQ289584    ABB92837.1    KQ459601    KPI94009.1    AGBW02009374    OWR50970.1    KQ460855    KPJ11876.1    JTDY01005041    KOB67436.1    AB548819    BAJ16205.1    ADTU01012794    ADTU01012795    GL771210    EFZ09795.1    KQ976424    KYM88360.1    GL435626    EFN72932.1    GL887888    EGI69726.1    KQ981906    KYN33293.1    KQ981153    KYN08861.1    LBMM01001036    KMQ97039.1    KQ982548    KYQ55161.1    AB066348    BAB62173.1    ATLV01013123    KE524840    KFB37261.1    GECZ01005141    JAS64628.1    KZ288291    PBC29224.1    NWSH01000130    PCG79230.1    APCN01004101    KK853366    KDR08103.1    KQ434899    KZC10997.1    NNAY01001290    OXU24469.1    BABH01030933    BABH01030934    KJ462516    AHY00655.1    KJ511854    AII79413.1    GU129932    ACY74431.1    UFQS01000673    UFQT01000673    SSX06025.1    SSX26382.1    GDIQ01269713    JAJ82011.1    HQ260916    AEN94570.1    GDIQ01245981    GDIQ01227794    GDIQ01210291    GDIQ01207807    GDIQ01206458    GDIQ01203248    GDIQ01191690    GDIQ01132238    GDIQ01113476    GDIP01089236    JAK41434.1    JAM14479.1    GEZM01076841    JAV63604.1    GGFJ01002095    MBW51236.1    GGFJ01002056    MBW51197.1    GDIP01253007    GDIQ01269714    GDIQ01227795    GDIQ01227793    GDIQ01225644    GDIQ01210290    GDIQ01191691    JAI70394.1    JAK41435.1    UFQS01003187    UFQT01003187    SSX15340.1    SSX34714.1    AXCN02002227    GGFL01004659    MBW68837.1    GGFL01004658    MBW68836.1    GQ178290    ACS66819.1    KQ971372    EFA10689.2    QOIP01000002    RLU25353.1    KK107436    EZA50855.1    GFJQ02003483    JAW03487.1    ODYU01008525    SOQ52209.1    HQ829425    ADW20295.1    KQ971342    EFA03618.2    GDQN01007634    GDQN01002429    JAT83420.1    JAT88625.1    GL732545    EFX80954.1    LRGB01000868    KZS15734.1    MF140473    ATU31738.1    AGBW02013402    OWR43484.1    UYRX01000315    VDK79935.1    KP795392    AKJ26284.1    SSX26380.1    GDHF01022317    JAI29997.1    JXJN01005087    JXJN01005088    CH916371    EDV92222.1    SSX26379.1    AAAB01008847    EAA06838.2    CH477885    EAT35362.1    AY237588    AAO85806.1    AMQN01000124    GAKP01019606    JAC39346.1    GDIQ01007080    JAN87657.1    GBXI01015167    JAC99124.1    AJ292755    CAC00630.1    DS235100    EEB11964.1    KZ288518    PBC25100.1    GACK01008080    JAA56954.1    GEBQ01000406    JAT39571.1    GBGD01000492    JAC88397.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000037510    + More
UP000005205    UP000078540    UP000000311    UP000007755    UP000078541    UP000078492    UP000036403    UP000075809    UP000030765    UP000002358    UP000079169    UP000085678    UP000242457    UP000075885    UP000075880    UP000076407    UP000075840    UP000005203    UP000027135    UP000076502    UP000215335    UP000075920    UP000192223    UP000076408    UP000075900    UP000075886    UP000007266    UP000279307    UP000053097    UP000000305    UP000076858    UP000277928    UP000091820    UP000078200    UP000075902    UP000092443    UP000092460    UP000001070    UP000095300    UP000075903    UP000007062    UP000008820    UP000009046   

PRIDE

D1MBK4    H9J910    H9JBI3    D1MBK3   

Pfam

PF00362   Integrin_beta        + More
PF18372   I-EGF_1
PF08725   Integrin_b_cyt
PF07974   EGF_2
PF07965   Integrin_B_tail
PF17205   PSI_integrin

Interpro

IPR002369   Integrin_bsu_VWA        + More
IPR002035   VWF_A       
IPR015812   Integrin_bsu       
IPR014836   Integrin_bsu_cyt_dom       
IPR036465   vWFA_dom_sf       
IPR040622   I-EGF_1       
IPR032695   Integrin_dom_sf       
IPR013032   EGF-like_CS       
IPR013111   EGF_extracell       
IPR036349   Integrin_bsu_tail_dom_sf       
IPR012896   Integrin_bsu_tail       
IPR033760   Integrin_beta_N       
IPR000742   EGF-like_dom       
IPR016201   PSI       

SUPFAM

SSF53300   SSF53300        + More
SSF69179   SSF69179       
SSF69687   SSF69687       

Gene 3D

3.40.50.410    

ProteinModelPortal

A0A076JQI1   D1MBK4   H9J910   Q66PY4   A0A2A4IWA0   A0S6A3   + More
A0A194PMP9   A0A212FB66   A0A194R7M9   A0A0L7KWJ3   E0D5F3   A0A158NE45   E9JBK8   A0A195BPC3   E2A0M9   F4W856   A0A195EYJ7   A0A195D7K9   A0A0J7L3M3   A0A151X462   Q95P95   A0A084VH17   K7IP94   A0A1B6GQB5   A0A3Q0JA47   A0A1S3I615   A0A1S3JZW7   A0A2A3ECL4   A0A182PFW1   A0A182IJP6   A0A182XDN2   A0A2A4K6E0   A0A182HIV0   A0A087ZTR1   A0A067QK14   A0A154PGR4   A0A232F1V4   H9JBI3   A0A023UG44   A0A076JVB8   D1MBK3   A0A336KRK3   A0A0P5EN75   A0A182W5K9   A0A1W4WXC9   A0A182YH54   V9I2Y6   A0A182RHJ6   A0A0N8B5P6   A0A1Y1KQM0   A0A2M4BDV9   A0A2M4BDW1   A0A0P5IU01   A0A336MVT2   A0A182Q0X5   A0A2M4CU18   A0A2M4CU05   C6KE04   A0A1S3I8E3   D6X0D6   A0A3L8DYQ0   A0A026W443   A0A1Z5L7T6   A0A2H1WGL4   F8TAD6   D6WK71   A0A1E1WNR2   E9GI17   A0A164YYE1   A0A2D3E2V7   A0A212EPU0   A0A3P6TGD1   A0A1A9X588   A0A0G3BIA0   A0A336M8L1   A0A1A9UUR6   A0A0K8UTI8   A0A182TIH0   A0A1A9X8U0   A0A1B0AX62   B4JNC9   A0A1S3IPR8   A0A1I8PFU3   A0A336MBS4   A0A182V657   Q7QE55   Q16M01   Q86G85   A0A1S4FW80   X2BBV3   A0A034V7S9   A0A0P6IR12   A0A0A1WKS8   Q9NAS7   E0VEZ0   A0A2A3E010   L7M1I1   A0A1B6MUI8   A0A069DXI6   A0A1I8PZ80  

PDB

4UM8     E-value=2.42756e-60,     Score=590

KEGG

100313953    K05719 integrin beta 1 | (RefSeq) integrin beta subunit 2

PATHWAY

04145    Phagosome - Bombyx mori (domestic silkworm)
04512    ECM-receptor interaction - Bombyx mori (domestic silkworm)

GO

GO:0007229   GO:0007155   GO:0016021   GO:0009986   GO:0033627   GO:0007160   GO:0005925   GO:0005178   GO:0008305   GO:0016477  

PANTHER

PTHR10082  

Subcellular location

Membrane  

Length:

632

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.88968

Exp number, first 60 AAs:

0.0001

Total prob of N-in:

0.00508

outside

1  -  562

TMhelix

563  -  585

inside

586  -  632

 

 

Pi

201.085915

Theta

167.793525

Tajima's D

0.739488

CLR

0.283247

CSRT

0.582320883955802

Interpretation

Uncertain