Silkworm Genome Informatics Database

Gene

KWMTBOMO01763

Pre Gene Modal

BGIBMGA014544

Annotation

PREDICTED:_leucine-rich_repeat_and_calponin_homology_domain-containing_protein_1-like_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr4(-):4032509-4064058 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.126

CDS

ATGGACTTCAGCAATGTCAGGGACAGAGCCAAACCGCTGCCTGCCATTAAGTACTCTCCACAAGCCTCGTTTGAAGAAGTACATGTCATAGCGTACGAGAAACAGCGTGGAGGGGAGCTCATTCCAAAGCAAAATTCGAATCAACTGACAGAATTACCGCGTGAGGTGTGTCAGATGCCACTGCAAGTCCTCCTCGTGCAAGACAACTTGCTCACCACGCTTCCCAAGGAGATCGGTAAGATGACGTCACTGGCTGAACTGGACGCCTCCAGCAACAGGCTGACGCAGGTTCCGATGACCCTCGGAGATTGTTCAGGTCTGCGAGCGCTCGACCTCAGTAATAATCAGCTGGGATTGCTTCCGTTGCAAATAACATACTTGCGTCTCGAATATTTGGACGTTAGCTGCAATTGCATATCGTCTCTGCCTCTGGAACTTCGGAACATGGACACGCTGGTCACCCTTAATCTGGAGAACAATCCTCTTGTTTCGCCACCCACCACTGTATGCATGCGCGGGCGCGTGCACATCTTCAAATATTTAGAGAACATGGCGAACAAAGACACGTTGCCCTCGCACAAGAGAGTCGAAGAGACCCGGTGGTCGACCAAACATAACTCGTACGTTATCAGCTCGCCCACCCAGAACGTAACGCATCAGATCACCTCCGGCAACGCTACTATAGACTGCCTCAGGCATAAGCCGCGACACGTCGTGGACAGCGGCTACTGTACAGACGGAGTTGATAAACGGTGGTCGAATGATGCCGGCGGCGAGGCAGGCGGCGGATCCGGTCGCTCGACGCCGAGCACCCCATCGACGCTGTCTCCGGGGGCCGCCCTCTCTCGGGCGCAATCCCTCTCCAGCGAGACTCCTTTGGCGAACCCCTCGCCTTTGCTCTCCGGCTGTCGCATATCACCCGAAGGGAACATTTCTAACTGTGAAGATAAGAGTAAAATAGCTCATCAACAAACCTACAGACAATACAAAGAAGCCCTAAGACAGCAACGCCAGCAAGACATATACCGTCCCCGCACAGAACAGTCCTCCCCCGAGTCGGATTCCCCCCACCACCTCAGCCCCCTCCATCACAATTCCTCTCCCCATCCCCCGATAAACGGCTTTGGCAACACCTCCCCGAACCTCTACCGATCGATTTCTTCCAATTCCAGTGCTTCCCCGAACGCCTCACAAGTGCCAAACTCGCCCCTCTTGCACTCGACCCCGCGGCGGTACCAAAACGGAAGCACCGATAAACAGGAAGAGAACAAAAGGCCAGTCCAGAAGGTGGTACCCTCCAGGAACGTTGCCAAAGTGTCCGCCGTCAATGGCAATGCGGATTACAATCGCGTGAACGGTCAGCTCGAAGCTTACGTGAAACCCAGCTCGCCCACCAAGTCTCCAACGAACACTTTAGGCTACAATAGCTTAGGGAAGTCCAGTATACCGAGGCAAGTGAACGGAGACAGCGTCAAGTCGGTCACGACTTCCGTAACGCAAGTGAGAGGCATGATACCGCAGCCCGTAGGCAAGATGGCGTGGAACAAAGAGACCAGCGCTGAGAAGTTAAGTTTCACCATGAAGAGGGAGTTCGATAAGCAGAAGGAGGAGTCGGATCTGATAGAACAGTTGAGGACGATAATAGAGAGCCGACTGAAGATGTCGCTACCGGAGCAGATAGCGCCAGTACTCGCGGACGGCGTCGTCCTGTGCCACCTCGCCAACCACGTGAAGCCGCGGGCCGTGGCTTCCGTGCACGTGCCTTCACCGGCACAGCCCAAATTGACAATGGCAAGATGTAGGAGGAACGTAGACAATTTTATCGAGGCCTGTCGGAAAATTGGCGTCGAAGAGAAACTGATGTGTTGCGCTGCCGACGTCTTGGAAGGTAAGGGTACCGTGCAAGTGGCCATCACGGTGTGCGAGTTGGTGCGGAGGCACGCGGCGGCTCGTGTCGCGCTGCCCACATAG

Protein

MDFSNVRDRAKPLPAIKYSPQASFEEVHVIAYEKQRGGELIPKQNSNQLTELPREVCQMPLQVLLVQDNLLTTLPKEIGKMTSLAELDASSNRLTQVPMTLGDCSGLRALDLSNNQLGLLPLQITYLRLEYLDVSCNCISSLPLELRNMDTLVTLNLENNPLVSPPTTVCMRGRVHIFKYLENMANKDTLPSHKRVEETRWSTKHNSYVISSPTQNVTHQITSGNATIDCLRHKPRHVVDSGYCTDGVDKRWSNDAGGEAGGGSGRSTPSTPSTLSPGAALSRAQSLSSETPLANPSPLLSGCRISPEGNISNCEDKSKIAHQQTYRQYKEALRQQRQQDIYRPRTEQSSPESDSPHHLSPLHHNSSPHPPINGFGNTSPNLYRSISSNSSASPNASQVPNSPLLHSTPRRYQNGSTDKQEENKRPVQKVVPSRNVAKVSAVNGNADYNRVNGQLEAYVKPSSPTKSPTNTLGYNSLGKSSIPRQVNGDSVKSVTTSVTQVRGMIPQPVGKMAWNKETSAEKLSFTMKREFDKQKEESDLIEQLRTIIESRLKMSLPEQIAPVLADGVVLCHLANHVKPRAVASVHVPSPAQPKLTMARCRRNVDNFIEACRKIGVEEKLMCCAADVLEGKGTVQVAITVCELVRRHAAARVALPT

Uniprot

A0A2A4JK00 A0A2A4JIT4 A0A2A4JJ34 A0A212F648 A0A194PZW2 A0A194R2W8 + More
A0A2H1WXH4 A0A1L8E607 A0A1L8E5M8 A0A1L8E5S7 A0A1L8E5A0

Pubmed

22118469 26354079

EMBL

NWSH01001317 PCG71730.1 PCG71729.1 PCG71728.1 AGBW02010076 OWR49212.1 + More
KQ459584 KPI98573.1 KQ460855 KPJ11864.1 ODYU01011396 SOQ57114.1 GFDF01000109 JAV13975.1 GFDF01000108 JAV13976.1 GFDF01000189 JAV13895.1 GFDF01000173 JAV13911.1

Proteomes

UP000218220 UP000007151 UP000053268 UP000053240

Pfam

PF00307 CH + More
PF13855 LRR_8

Interpro

IPR032675   LRR_dom_sf        + More
IPR003591   Leu-rich_rpt_typical-subtyp
IPR001715   CH-domain
IPR036872   CH_dom_sf
IPR001611   Leu-rich_rpt

SUPFAM

SSF47576 SSF47576

Gene 3D

1.10.418.10 3.80.10.10

ProteinModelPortal

A0A2A4JK00 A0A2A4JIT4 A0A2A4JJ34 A0A212F648 A0A194PZW2 A0A194R2W8 + More
A0A2H1WXH4 A0A1L8E607 A0A1L8E5M8 A0A1L8E5S7 A0A1L8E5A0

PDB

4U08 E-value=8.26675e-16, Score=207

KEGG

101736598 no KO assigned | (RefSeq) leucine-rich repeat and calponin homology domain-containing protein 1-like

GO

GO:0016021 GO:0005515 GO:0043565 GO:0003677 GO:0006470 GO:0008138 GO:0006370 GO:0006397 GO:0004651 GO:0005634

Length:

656

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00306

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00084

outside

1 - 656

Pi

254.355586

Theta

189.972211

Tajima's D

1.260898

CLR

0.568953

CSRT

0.72316384180791

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics