Silkworm Genome Informatics Database

Gene

KWMTBOMO01762

Pre Gene Modal

BGIBMGA014549

Annotation

PREDICTED:_homeobox_protein_aristaless-like_[Bombyx_mori]

Location

Bomo_Chr4(-):3948560-3973648 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.319

CDS

ATGGGAGTATCAGAGCCCGGTTCTTCAACAACTCCCGAATTATCTTTGGACCATGAGAGGCCAGGATCAGGCAGCGGTCCTGATGATGAGGACATCCCCAGAAGGAAGCAGAGGCGATACAGGACGACATTCACTAGTTATCAATTGGATGAACTGGAGAAGGCTTTCGGAAGAACACATTATCCTGACGTCTTTACTAGAGAAGAGCTAGCTCTAAAGATAGGGTTGACTGAAGCCCGAATCCAGGTGTGGTTCCAAAATCGGCGGGCGAAATGGCGGAAACAAGAAAAGGTTGGGCCACAAGCGCATCCGTACAGCGGGTACTTGAACGGTGTGCAACCGCTGCCGACATCCGCGCCGCTGCCAACGGCACCACACCCGCTCTCACAGCTGGGATTCGGTCTTAGGAAACCATTCGACACCGCATTAGCGTCGTTCAGGTACGCTAATTCCCAACTATTCGGGACGCAATACTTGCCACCACTCTCGCGACCACTATTCGGAGCCCCCTTATACCCGACATCGCACGCACATTTTCATTCCTTATTCGTGAATCTAACAGCTCATGACTCCCTTCGTCTTTCCGAAGACAGCAGACTCTCGGCTGAACATTCTCGATCGTCGCCTGAAAATATGCGGCCCAGTGAATCGTTTCAAGCAGCGACGAGATCGAATCGTTCGCCGTCGATATCTCCCCCTATATCGCCTGGTAGTGAGTCGTTGCCTTTACAGCCCGCAATGGACGATGTAAGAAGTTCGAGTATCGCCGCGTTGAGATTGGCAGCACGGGAGCACGAATTGAGATTAGAATTGTTGAGACAAAGAGCAGATTTGATTTGCTGA

Protein

MGVSEPGSSTTPELSLDHERPGSGSGPDDEDIPRRKQRRYRTTFTSYQLDELEKAFGRTHYPDVFTREELALKIGLTEARIQVWFQNRRAKWRKQEKVGPQAHPYSGYLNGVQPLPTSAPLPTAPHPLSQLGFGLRKPFDTALASFRYANSQLFGTQYLPPLSRPLFGAPLYPTSHAHFHSLFVNLTAHDSLRLSEDSRLSAEHSRSSPENMRPSESFQAATRSNRSPSISPPISPGSESLPLQPAMDDVRSSSIAALRLAAREHELRLELLRQRADLIC

Similarity

Belongs to the paired homeobox family.

Uniprot

A0A2H1WR07 A0A2A4JH09 A0A212EWD0 A0A194R248 D2KQJ2 A0A194PZ14 + More
A0A2A4JH44 A0A2A4JFF7 D2KQJ3 A0A212EWE9 A0A194R7L3 A0A139WH33 Q2MHJ3 A0A154PGI9

Pubmed

22118469 26354079 20624848 18362917 19820115

EMBL

ODYU01010357 SOQ55416.1 NWSH01001608 PCG70710.1 AGBW02012009 OWR45808.1 + More
KQ460855 KPJ11863.1 GU263417 ADA70355.1 KQ459584 KPI98572.1 PCG70712.1 PCG70711.1 GU263418 ADA70356.1 OWR45806.1 KPJ11861.1 KQ971343 KYB27272.1 AB200970 BAE78538.1 KQ434899 KZC10996.1

Proteomes

UP000218220 UP000007151 UP000053240 UP000053268 UP000007266 UP000076502 + More

Pfam

PF00046 Homeodomain + More
PF03826 OAR

Interpro

IPR001356   Homeobox_dom        + More
IPR017970   Homeobox_CS
IPR003654   OAR_dom
IPR000047   HTH_motif
IPR009057   Homeobox-like_sf

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A2H1WR07 A0A2A4JH09 A0A212EWD0 A0A194R248 D2KQJ2 A0A194PZ14 + More
A0A2A4JH44 A0A2A4JFF7 D2KQJ3 A0A212EWE9 A0A194R7L3 A0A139WH33 Q2MHJ3 A0A154PGI9

PDB

3A01 E-value=6.69796e-28, Score=307

KEGG

101737825 K09452 homeobox protein aristaless-related | (RefSeq) homeobox protein aristaless-like

GO

GO:0005634 GO:0007275 GO:0043565 GO:0006355 GO:0000977 GO:0000981 GO:0048666 GO:0003677 GO:0005515 GO:0006470 GO:0008138 GO:0006370 GO:0006397 GO:0004651

Subcellular location

Nucleus

Length:

280

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00219

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01123

outside

1 - 280

Pi

258.559661

Theta

190.317662

Tajima's D

1.364851

CLR

0.121394

CSRT

0.754862256887156

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree