Silkworm Genome Informatics Database

Gene

KWMTBOMO01760

Annotation

PREDICTED:_homeobox_protein_aristaless-like_[Bombyx_mori]

Location

Bomo_Chr4(-):3821289-3826873 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Extracellular Reliability : 3.932

CDS

ATGGGCATATCGGAGGTGCCCAAAGACGATTCCCCCCGGACCACTCCCGATCTATCTCGTACTGATCAGTCGCCTTCAGAACGACCACATCCAGGCTCCGTGGACAGCGATGATGCTGACGAATTTGCCCCGAAAAGGAAACAAAGGCGTTACAGAACCACCTTCACTAGTTTTCAACTTGAAGAGCTGGAGAAAGCGTTTTCTAGAACCCATTATCCAGATGTATTTACGAGGGAGGAGTTGGCAATGAAGATAGGATTGACTGAAGCTCGAATTCAGGTAGACATATTTAAATTGACCTACAAAAAAAATATTCCACACGTTTACATTCAGTACGTCAAGCACGAAAATTCATCGAATTCGTAA

Protein

MGISEVPKDDSPRTTPDLSRTDQSPSERPHPGSVDSDDADEFAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVDIFKLTYKKNIPHVYIQYVKHENSSNS

Similarity

Belongs to the paired homeobox family.

Uniprot

A0A2H1WYD3 A0A2A4JH44 A0A2A4JFF7 D2KQJ3 A0A212EWE9 A0A194R7L3 + More
D2KQJ1 A0A0L7KNS5 A0A182J2K6 A0A146KK39 A0A0L7RB52 A0A0A9WS79 A0A0K8TJ32 A0A034WVP4 H9J914 A0A1L8DI70 A0A1L8DI66 A0A2H1WR07 D2KQJ2 A0A1W4WWV1 A0A2A4JH09

Pubmed

20624848 22118469 26354079 26227816 26823975 25401762 + More
25348373 19121390

EMBL

ODYU01011941 SOQ57976.1 NWSH01001608 PCG70712.1 PCG70711.1 GU263418 + More
ADA70356.1 AGBW02012009 OWR45806.1 KQ460855 KPJ11861.1 GU263416 ADA70354.1 JTDY01008087 KOB64750.1 GDHC01021668 JAP96960.1 KQ414617 KOC68094.1 GBHO01033318 JAG10286.1 GBRD01000223 GDHC01006636 JAG65598.1 JAQ11993.1 GAKP01000273 JAC58679.1 BABH01004681 GFDF01007916 JAV06168.1 GFDF01007915 JAV06169.1 ODYU01010357 SOQ55416.1 GU263417 ADA70355.1 PCG70710.1

Proteomes

UP000218220 UP000007151 UP000053240 UP000037510 UP000075880 UP000053825 + More
UP000005204 UP000192223

PRIDE

H9J914

Pfam

PF00046 Homeodomain + More
PF03826 OAR

Interpro

IPR000047   HTH_motif        + More
IPR009057   Homeobox-like_sf
IPR001356   Homeobox_dom
IPR017970   Homeobox_CS
IPR003654   OAR_dom

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A2H1WYD3 A0A2A4JH44 A0A2A4JFF7 D2KQJ3 A0A212EWE9 A0A194R7L3 + More
D2KQJ1 A0A0L7KNS5 A0A182J2K6 A0A146KK39 A0A0L7RB52 A0A0A9WS79 A0A0K8TJ32 A0A034WVP4 H9J914 A0A1L8DI70 A0A1L8DI66 A0A2H1WR07 D2KQJ2 A0A1W4WWV1 A0A2A4JH09

PDB

3A01 E-value=6.17001e-20, Score=233

KEGG

101741073 K09452 homeobox protein aristaless-related | (RefSeq) homeobox protein aristaless-like

GO

GO:0005634 GO:0006355 GO:0043565 GO:0007275 GO:0003677 GO:0008270 GO:0005852 GO:0005515 GO:0006470 GO:0008138 GO:0006370 GO:0006397 GO:0004651

Subcellular location

Nucleus

Length:

121

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.13231

outside

1 - 121

Pi

238.974727

Theta

159.897629

Tajima's D

-1.240183

CLR

1.167316

CSRT

0.0977951102444878

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree