SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01760
Annotation
PREDICTED:_homeobox_protein_aristaless-like_[Bombyx_mori]
Transcription factor
Location in the cell
Extracellular   Reliability : 3.932
 

Sequence

CDS
ATGGGCATATCGGAGGTGCCCAAAGACGATTCCCCCCGGACCACTCCCGATCTATCTCGTACTGATCAGTCGCCTTCAGAACGACCACATCCAGGCTCCGTGGACAGCGATGATGCTGACGAATTTGCCCCGAAAAGGAAACAAAGGCGTTACAGAACCACCTTCACTAGTTTTCAACTTGAAGAGCTGGAGAAAGCGTTTTCTAGAACCCATTATCCAGATGTATTTACGAGGGAGGAGTTGGCAATGAAGATAGGATTGACTGAAGCTCGAATTCAGGTAGACATATTTAAATTGACCTACAAAAAAAATATTCCACACGTTTACATTCAGTACGTCAAGCACGAAAATTCATCGAATTCGTAA
Protein
MGISEVPKDDSPRTTPDLSRTDQSPSERPHPGSVDSDDADEFAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVDIFKLTYKKNIPHVYIQYVKHENSSNS

Summary

Similarity
Belongs to the paired homeobox family.
Pfam
PF00046   Homeodomain        + More
PF03826   OAR
Interpro
IPR000047   HTH_motif        + More
IPR009057   Homeobox-like_sf       
IPR001356   Homeobox_dom       
IPR017970   Homeobox_CS       
IPR003654   OAR_dom       
SUPFAM
SSF46689   SSF46689       
PDB
3A01     E-value=6.17001e-20,     Score=233

Ontologies

Topology

Subcellular location
Nucleus  
Length:
121
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.13231
outside
1  -  121
 
 

Population Genetic Test Statistics

Pi
238.974727
Theta
159.897629
Tajima's D
-1.240183
CLR
1.167316
CSRT
0.0977951102444878
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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