Gene

KWMTBOMO01755

Pre Gene Modal

BGIBMGA006140

Annotation

PREDICTED:_carboxy-terminal_domain_RNA_polymerase_II_polypeptide_A_small_phosphatase_1_[Amyelois_transitella]

Location

Bomo_Chr4(+):3707774-3724993      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.605 PlasmaMembrane   Reliability : 1.078

CDS

ATGGACGCATCGTCCATTATAACTCAGGTGTCACGGGATGACGAACAATTAAACAATTATGGACCCGATAGAGGTTCATCCCCTGGTGTGCAGCATAATGAGGGTGACGGCACCCCAGTTTCGGGGTCGACCCCTTTGGGTGGGAAGAAATCTAGCGGGACAGGCGGCTTCTTGCGATCGTTGCTGTGCTGTTGGCGCGGTGGCCGAGGCAAGGGACCTCCCGGAGGCAATGGCACCAATAGTATCGACGGCAGGGCTTCTCCGCCCTTGCTGGTCATGTCTGAACATGCCCCCAGACCTCTGTTACCGCCAGTGAGACACCAGGACATGCATAAAAAGTGTATGGTTATTGATTTGGATGAAACATTAGTGCACAGCTCATTCAAGCCTATAAACAATGCAGATTTCGTGGTGCCTGTAGAAATCGACGGTGCGGTCCATCAAGTTTACGTTCTGAAGAGGCCGCATGTCGACGAGTTCCTGCGGCGGTGTGGCGAGCTTTACGAGTGCGTTTTGTTCACCGCGTCATTGGCGAAGTACGCCGATCCTGTCGCCGATCTACTGGACCGATGGGGCGTATTCCGCGCGCGGCTGTTCCGCGACAGCTGCGTGTTCCACCGCGGCAACTACGTCAAGGACCTGAACAGCCTCGGGCGGGACCTGCGGCGGGTCGTCATCGTCGACAACTCGCCCGCTTCTTACATATTCCACCCGGATAATGCTGTGCCTGTCGCGTCCTGGTTCGACGACATGACAGATTCTGAGCTGCTCGACCTGATCCCGTTCTTCGAGAAGCTGAGCAAAGTGGAGAGCGTGTACACTGTCTTGCGCAACTCGAACCACCCGTACAACCCGACGCAGAACAACTCGCCGAGCACATAG

Protein

MDASSIITQVSRDDEQLNNYGPDRGSSPGVQHNEGDGTPVSGSTPLGGKKSSGTGGFLRSLLCCWRGGRGKGPPGGNGTNSIDGRASPPLLVMSEHAPRPLLPPVRHQDMHKKCMVIDLDETLVHSSFKPINNADFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGELYECVLFTASLAKYADPVADLLDRWGVFRARLFRDSCVFHRGNYVKDLNSLGRDLRRVVIVDNSPASYIFHPDNAVPVASWFDDMTDSELLDLIPFFEKLSKVESVYTVLRNSNHPYNPTQNNSPST

Uniprot

A0A194Q591   A0A212EVW7   A0A2A4JQV9   A0A194R243   A0A2A4JP74   A0A1E1WIZ3   + More
A0A1B6CPC4   A0A2P8Z7T5   A0A1W4XCY2   A0A1Y1KLL5   A0A0M8ZX50   A0A1B6JIN2   A0A1B6MJA2   A0A088AD85   E2BAZ1   A0A224XV12   A0A023F553   A0A067R0I1   N6UC94   A0A195EZI6   A0A0N7Z8X6   D6WJR7   A0A158P2R1   A0A0P4VPQ7   A0A026VU91   A0A0C9Q259   A0A0A9X8N7   K7IXM6   E0VJR2   A0A0A9W7P1   A0A0J7KML9   E9IPJ7   A0A336K4Q7   F4W5S0   A0A195DGJ8   A0A3Q0J7Z6   A0A151X2K9   B4LDZ8   A0A0Q9WUW3   B4KYH7   B4J3N7   A0A1L8DGM0   A0A154PEV8   A0A0A1WYU9   A0A3B0K0A8   A0A034W076   W8BEZ4   A0A034W4C9   A0A0A1WLG9   B4H7T2   Q29D94   A0A1W4VMF8   B3NDQ2   B3M9T8   A0A0K8V083   A0A2A3ECH6   B4ITV4   U4UAW4   A0A1Z5LDW7   Q9VUX0   A0A0J9RW12   B4QLS5   A0A1Q3FCD0   V5IFU9   A0A0K8TR68   Q7YU53   M9PFN0   A0A023FJT2   A0A023GK94   G3MP86   J9JLI7   A0A2S2QHR5   A0A131XFW3   A0A131ZDT6   L7M156   A0A2S2PNP6   A0A2R5LJT7   A0A2H8TEC6   A0A293M2H0   A0A1I8JVR3   A0A2M4CPD0   A0A0K8RRI2   A0A1I8MRU9   B4N728   A0A210QY34   E9G5C4   A0A232F0E4   A0A023FYD6   A0A2R7X5F7   A0A1E1X2F2   C3YYP1   A0A224YV46   A0A1B0GCP0   B4HIM4   A0A162NJ95   A0A2C9JQ61  

Pubmed

26354079    22118469    29403074    28004739    20798317    25474469    + More
24845553    23537049    27129103    18362917    19820115    21347285    24508170    30249741    25401762    26823975    20075255    20566863    21282665    21719571    17994087    25830018    25348373    24495485    15632085    23185243    17550304    28528879    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    25765539    26369729    22216098    28049606    26830274    25576852    25315136    28812685    21292972    28648823    28503490    18563158    28797301    15562597   

EMBL

KQ459584    KPI98565.1    AGBW02012119    OWR45611.1    NWSH01000867    PCG73802.1    + More
KQ460855    KPJ11858.1    PCG73801.1    GDQN01004146    GDQN01002564    JAT86908.1    JAT88490.1    GEDC01022067    JAS15231.1    PYGN01000158    PSN52556.1    GEZM01080349    JAV62204.1    KQ435811    KOX72905.1    GECU01008550    JAS99156.1    GEBQ01004012    JAT35965.1    GL446901    EFN87082.1    GFTR01004655    JAW11771.1    GBBI01002514    JAC16198.1    KK852804    KDR16246.1    APGK01040754    APGK01040755    KB740984    ENN76272.1    KQ981905    KYN33327.1    GDKW01002123    JAI54472.1    KQ971343    EFA03107.1    ADTU01007394    GDKW01002122    JAI54473.1    KK107921    QOIP01000001    EZA47215.1    RLU26385.1    GBYB01008093    JAG77860.1    GBHO01028466    GBRD01015826    GDHC01014324    JAG15138.1    JAG50000.1    JAQ04305.1    AAZX01014366    AAZX01019770    DS235226    EEB13618.1    GBHO01042729    GBRD01015827    GDHC01002898    JAG00875.1    JAG49999.1    JAQ15731.1    LBMM01005397    KMQ91552.1    GL764539    EFZ17505.1    UFQS01000099    UFQT01000099    SSW99497.1    SSX19877.1    GL887695    EGI70396.1    KQ980903    KYN11589.1    KQ982576    KYQ54675.1    CH940647    EDW70041.1    KRF84686.1    CH933809    EDW18788.2    CH916366    EDV97268.1    GFDF01008584    JAV05500.1    KQ434889    KZC10389.1    GBXI01010597    JAD03695.1    OUUW01000002    SPP76798.1    GAKP01009966    JAC48986.1    GAMC01009313    JAB97242.1    GAKP01009967    JAC48985.1    GBXI01014590    JAC99701.1    CH479219    EDW34722.1    CH379070    EAL30520.2    KRT09029.1    CH954178    EDV52185.1    CH902618    EDV40129.1    GDHF01020000    JAI32314.1    KZ288285    PBC29483.1    CH891734    EDW99817.1    KB631904    ERL87100.1    GFJQ02001839    JAW05131.1    AE014296    BT050447    AAF49553.2    ACJ13154.1    CM002912    KMY99893.1    CM000363    EDX10624.1    GFDL01009810    JAV25235.1    GANP01007807    JAB76661.1    GDAI01001183    JAI16420.1    BT009984    AAQ22453.1    AGB94605.1    GBBK01003177    JAC21305.1    GBBM01001975    JAC33443.1    JO843687    AEO35304.1    ABLF02032746    GGMS01008106    GGMS01011690    MBY77309.1    MBY80893.1    GEFH01003980    JAP64601.1    GEDV01000156    JAP88401.1    GACK01006993    JAA58041.1    GGMR01018450    MBY31069.1    GGLE01005613    MBY09739.1    GFXV01000652    MBW12457.1    GFWV01010444    MAA35173.1    GGFL01002999    MBW67177.1    GADI01000137    JAA73671.1    CH964168    EDW80167.1    NEDP02001306    OWF53612.1    GL732532    EFX85656.1    NNAY01001405    OXU24082.1    GBBL01001595    JAC25725.1    KK857164    PTY26901.1    GFAC01005751    JAT93437.1    GG666565    EEN54681.1    GFPF01006556    MAA17702.1    CCAG010002173    CCAG010002174    CCAG010002175    CH480815    EDW41654.1    LRGB01000568    KZS18035.1   

Proteomes

UP000053268    UP000007151    UP000218220    UP000053240    UP000245037    UP000192223    + More
UP000053105    UP000005203    UP000008237    UP000027135    UP000019118    UP000078541    UP000007266    UP000005205    UP000053097    UP000279307    UP000002358    UP000009046    UP000036403    UP000007755    UP000078492    UP000079169    UP000075809    UP000008792    UP000009192    UP000001070    UP000076502    UP000268350    UP000008744    UP000001819    UP000192221    UP000008711    UP000007801    UP000242457    UP000002282    UP000030742    UP000000803    UP000000304    UP000007819    UP000076407    UP000095301    UP000007798    UP000242188    UP000000305    UP000215335    UP000001554    UP000092444    UP000001292    UP000076858    UP000076420   

PRIDE

Q9VUX0    Q7YU53   

Pfam

PF03031   NIF        + More
PF00839   Cys_rich_FGFR
PF00075   RNase_H

Interpro

IPR040078   RNA_Pol_CTD_Phosphatase        + More
IPR036412   HAD-like_sf       
IPR023214   HAD_sf       
IPR011948   Dullard_phosphatase       
IPR004274   FCP1_dom       
IPR017873   Cys-rich_GLG1_repeat_euk       
IPR001893   Cys-rich_GLG1_repeat       
IPR039728   GLG1       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       

SUPFAM

SSF56784   SSF56784        + More
SSF53098   SSF53098       

Gene 3D

3.40.50.1000     3.30.420.10    

ProteinModelPortal

A0A194Q591   A0A212EVW7   A0A2A4JQV9   A0A194R243   A0A2A4JP74   A0A1E1WIZ3   + More
A0A1B6CPC4   A0A2P8Z7T5   A0A1W4XCY2   A0A1Y1KLL5   A0A0M8ZX50   A0A1B6JIN2   A0A1B6MJA2   A0A088AD85   E2BAZ1   A0A224XV12   A0A023F553   A0A067R0I1   N6UC94   A0A195EZI6   A0A0N7Z8X6   D6WJR7   A0A158P2R1   A0A0P4VPQ7   A0A026VU91   A0A0C9Q259   A0A0A9X8N7   K7IXM6   E0VJR2   A0A0A9W7P1   A0A0J7KML9   E9IPJ7   A0A336K4Q7   F4W5S0   A0A195DGJ8   A0A3Q0J7Z6   A0A151X2K9   B4LDZ8   A0A0Q9WUW3   B4KYH7   B4J3N7   A0A1L8DGM0   A0A154PEV8   A0A0A1WYU9   A0A3B0K0A8   A0A034W076   W8BEZ4   A0A034W4C9   A0A0A1WLG9   B4H7T2   Q29D94   A0A1W4VMF8   B3NDQ2   B3M9T8   A0A0K8V083   A0A2A3ECH6   B4ITV4   U4UAW4   A0A1Z5LDW7   Q9VUX0   A0A0J9RW12   B4QLS5   A0A1Q3FCD0   V5IFU9   A0A0K8TR68   Q7YU53   M9PFN0   A0A023FJT2   A0A023GK94   G3MP86   J9JLI7   A0A2S2QHR5   A0A131XFW3   A0A131ZDT6   L7M156   A0A2S2PNP6   A0A2R5LJT7   A0A2H8TEC6   A0A293M2H0   A0A1I8JVR3   A0A2M4CPD0   A0A0K8RRI2   A0A1I8MRU9   B4N728   A0A210QY34   E9G5C4   A0A232F0E4   A0A023FYD6   A0A2R7X5F7   A0A1E1X2F2   C3YYP1   A0A224YV46   A0A1B0GCP0   B4HIM4   A0A162NJ95   A0A2C9JQ61  

PDB

3PGL     E-value=3.04961e-85,     Score=802

KEGG

101740688    K15731 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] | (Re

GO

GO:0008420   GO:0006357   GO:0016021   GO:0004721   GO:0005840   GO:0000139   GO:0005886   GO:0006470   GO:0004523   GO:0003676   GO:0016791   GO:0004725   GO:0004484   GO:0008138   GO:0006370   GO:0006397   GO:0004651   GO:0005634  

PANTHER

PTHR11884  

Length:

293

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000700000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03788

outside

1  -  293

 

 

Pi

192.863314

Theta

161.623225

Tajima's D

0.02736

CLR

1118.833229

CSRT

0.381230938453077

Interpretation

Uncertain