Gene

KWMTBOMO01748  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006014

Annotation

PREDICTED:_transcription_initiation_factor_IIB_[Amyelois_transitella]

Location

Bomo_Chr4(-):3588411-3592983      View in EpiBrowser

Full name

Transcription initiation factor IIB      

Alternative Name

General transcription factor TFIIB

Location in the cell

Nuclear   Reliability : 2.115

CDS

ATGGCGAGTACATCGAGAATTGAGGCGAATAAAGTGGTTTGCTATGCTCACCCTGATGCGCCCCTTATCGAGGATTACAGAGCGGGTGATATGATATGTTCTGAATGCGGTTTGGTGGTCGGAGACAGAGTCATAGACGTCGGTTCGGAGTGGCGTACTTTTAGCAATGAGAAGTCTGGAGTAGATCCGTCTCGTGTTGGTGGTCCTGAAAACCCACTTTTATCTGGAGGTGATTTGTCAACTATCATTGGGCCAGGACGAGGAGATGCATCATTTGACAGCTTTGGAGTTTCCAAATATCAAAATAGAAGAAACATAAGCAGCACAGATAGAGCCTTAATCAATGCATTCCGAGAAATCAACACAATGGCGGATAGAATTAATCTTCCAAAAACTATTGTGGACAGAGCAAACAATCTTTTTAAACAGGTTCACGACGGTAAAAACTTGAAGGGTCGTGCCAATGATGCTATAGCTTCAGCTTGCCTCTACATTGCTTGTCGTCAAGAAGGTGTGCCACGTACATTTAAAGAGATCTGTGCCGTCAGCAAGATAAGTAAAAAAGAAATAGGAAGGTGTTTCAAATTGATTCTGAAAGCACTGGAGACTTCAGTTGATCTCATTACAACAGCAGATTTTATGTCTCGGTTTTGCTCGAATTTGGGTCTGCCAAATTCAGTGCAACGCGCAGCTACACATATCGCAAGGAAAGCTGGAGAGCTGGACATAGTGTCTGGAAGAAGTCCTATTTCAGTTGCTGCAGCTGCCATTTATATGGCTTCACAGGCATCAGAAGACAAACGCAGTCAGAAAGAGATCGGCGATATTGCTGGTGTTGCGGACGTTACGATCCGACAGTCTTACAAATTGATGTATCCATCCGCAGCAAGACTGTTCCCTGAAGATTTCAAATTCGCAACTCCTATTGAATTCCTACCACAGATGTAG

Protein

MASTSRIEANKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTADFMSRFCSNLGLPNSVQRAATHIARKAGELDIVSGRSPISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLMYPSAARLFPEDFKFATPIEFLPQM

Subunit

Belongs to the TFIID complex which is composed of TATA binding protein (Tbp) and a number of TBP-associated factors (Tafs). Associates with TFIID-IIA (DA complex) to form TFIID-IIA-IIB (DAB-complex) which is then recognized by polymerase II.

Similarity

Belongs to the TFIIB family.

Keywords

Complete proteome   Metal-binding   Nucleus   Reference proteome   Repeat   Transcription   Transcription regulation   Zinc   Zinc-finger  

Feature

chain  Transcription initiation factor IIB

Uniprot

H9J922   A0A212FDG8   A0A2A4JX02   A0A194PZU9   A0A2H1W5H6   A0A194R7K3   + More
A0A0L7QX69   A0A088A0P9   A0A067R015   A0A2J7QYZ6   D6WN74   A0A1B6GJ52   A0A1B6HU03   A0A0N0BL31   A0A1Y1NCQ2   E2AFR1   A0A026WKH8   J3JZI8   A0A195CTR9   A0A154P0R6   A0A1B6MM13   A0A0M5IWI2   A0A2A3EQY6   E2C0J3   B4LVD1   B4KHS4   A0A0J7L5W8   A0A151JQZ6   A0A158NTU6   B4JPZ0   A0A1W4UFZ1   A0A3B0KDE6   B5DHX4   B4G786   M9PCM4   B3MJI1   B4MUC1   A0A0L0C7U4   B3N9Q3   B4Q9A4   P29052   E0VNE5   A0A232FA54   K7IUT4   B4NZP8   A0A1I8M1Y3   A0A224XSR1   B4HWP7   A0A1I8Q423   A0A195BMG1   A0A195FQY2   A0A151WLM7   A0A0P4VST3   A0A0V0G6F3   A0A1L8DH73   B0WI57   E9IQ81   A0A1S3DGN6   A0A1Q3FWI8   A0A023EPE7   A0A336KY44   Q17AB8   A0A1A9UNQ2   U5EXJ6   A0A1A9ZXG2   A0A1A9W0P8   D3TNF6   A0A1A9XTY1   A0A1B0C246   A0A0K8TRN1   Q17AB9   A0A146LAR9   A0A182GZI9   A0A1B6CE83   A0A182RPR5   A0A182IDZ9   A0A182XCM3   A0A182VV34   A0A0K8W6R6   A0A0K8U1S1   A0A034WT36   A0A034WUD8   W8C7B0   A0A182MQF3   Q7QG89   A0A182UP06   A0A182J3Y5   A0A182NLK2   A0A182L5U4   A0A182Q327   A0A182PB41   A0A182Y5Q4   A0A2M3ZA79   A0A2M4AM58   A0A2M4BUK3   W5J5M4   A0A182F210   A0A1J1HJN0   A0A0P6AIJ9   A0A0P5DJT8  

Pubmed

19121390    22118469    26354079    24845553    18362917    19820115    + More
28004739    20798317    24508170    22516182    23537049    17994087    21347285    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26108605    22936249    1557390    1644295    20566863    28648823    20075255    17550304    25315136    27129103    21282665    24945155    17510324    20353571    26369729    26823975    26483478    25348373    24495485    12364791    14747013    17210077    20966253    25244985    20920257    23761445   

EMBL

BABH01004630    AGBW02009044    OWR51796.1    NWSH01000448    PCG76339.1    KQ459584    + More
KPI98558.1    ODYU01006472    SOQ48339.1    KQ460855    KPJ11851.1    KQ414705    KOC63190.1    KK852840    KDR15192.1    NEVH01009081    PNF33800.1    KQ971342    EFA03052.1    GECZ01007436    JAS62333.1    GECU01029554    JAS78152.1    KQ435687    KOX81398.1    GEZM01007000    JAV95489.1    GL439124    EFN67722.1    KK107167    EZA56488.1    APGK01048267    BT128670    KB741103    KB632401    AEE63627.1    ENN73844.1    ERL94911.1    KQ977279    KYN04086.1    KQ434783    KZC04944.1    GEBQ01002997    JAT36980.1    CP012523    ALC39268.1    KZ288201    PBC33549.1    GL451800    EFN78510.1    CH940649    EDW63310.1    CH933807    EDW13361.1    LBMM01000651    KMQ97889.1    KQ978615    KYN29818.1    ADTU01026159    CH916372    EDV98970.1    OUUW01000006    SPP81678.1    CH379059    EDY69901.2    CH479180    EDW28340.1    AE014134    AGB92884.1    CH902620    EDV32349.1    CH963857    EDW76047.1    JRES01000893    KNC27479.1    CH954177    EDV58548.1    CM000361    CM002910    EDX04546.1    KMY89545.1    M88164    M91081    U02879    U35148    BT011459    BT015269    DS235336    EEB14901.1    NNAY01000550    OXU27726.1    AAZX01002635    CM000157    EDW88832.1    GFTR01004946    JAW11480.1    CH480818    EDW52442.1    KQ976435    KYM87065.1    KQ981382    KYN42314.1    KQ982959    KYQ48764.1    GDKW01001044    JAI55551.1    GECL01002543    JAP03581.1    GFDF01008374    JAV05710.1    DS231943    EDS28248.1    GL764666    EFZ17278.1    GFDL01003137    JAV31908.1    GAPW01002723    JAC10875.1    UFQS01001200    UFQT01001200    SSX09667.1    SSX29457.1    CH477337    EAT43173.1    GANO01000919    JAB58952.1    CCAG010011567    EZ422958    ADD19234.1    JXJN01024340    GDAI01000802    JAI16801.1    EAT43172.1    GDHC01014417    JAQ04212.1    JXUM01099634    KQ564507    KXJ72164.1    GEDC01025587    JAS11711.1    GDHF01005724    JAI46590.1    GDHF01031836    JAI20478.1    GAKP01001148    JAC57804.1    GAKP01001147    JAC57805.1    GAMC01000642    JAC05914.1    AXCM01002280    AAAB01008839    EAA05904.4    AXCN02002502    GGFM01004696    MBW25447.1    GGFK01008539    MBW41860.1    GGFJ01007531    MBW56672.1    ADMH02002162    ETN58170.1    CVRI01000001    CRK86457.1    GDIP01029253    JAM74462.1    GDIP01155226    JAJ68176.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000053240    UP000053825    + More
UP000005203    UP000027135    UP000235965    UP000007266    UP000053105    UP000000311    UP000053097    UP000019118    UP000030742    UP000078542    UP000076502    UP000092553    UP000242457    UP000008237    UP000008792    UP000009192    UP000036403    UP000078492    UP000005205    UP000001070    UP000192221    UP000268350    UP000001819    UP000008744    UP000000803    UP000007801    UP000007798    UP000037069    UP000008711    UP000000304    UP000009046    UP000215335    UP000002358    UP000002282    UP000095301    UP000001292    UP000095300    UP000078540    UP000078541    UP000075809    UP000002320    UP000079169    UP000008820    UP000078200    UP000092445    UP000091820    UP000092444    UP000092443    UP000092460    UP000069940    UP000249989    UP000075900    UP000075920    UP000075883    UP000007062    UP000075903    UP000075880    UP000075884    UP000075882    UP000075886    UP000075885    UP000076408    UP000000673    UP000069272    UP000183832   

PRIDE

H9J922    M9PCM4    P29052   

Pfam

PF00382   TFIIB        + More
PF08271   TF_Zn_Ribbon
PF04048   Sec8_exocyst
PF00147   Fibrinogen_C

Interpro

IPR013150   TFIIB_cyclin        + More
IPR013137   Znf_TFIIB       
IPR000812   TFIIB       
IPR023486   TFIIB_CS       
IPR036915   Cyclin-like_sf       
IPR013763   Cyclin-like       
IPR007191   Sec8_exocyst       
IPR002181   Fibrinogen_a/b/g_C_dom       
IPR014716   Fibrinogen_a/b/g_C_1       
IPR036056   Fibrinogen-like_C       

SUPFAM

SSF47954   SSF47954        + More
SSF56496   SSF56496       

Gene 3D

3.90.215.10    

CDD

cd00043  CYCLIN

ProteinModelPortal

H9J922   A0A212FDG8   A0A2A4JX02   A0A194PZU9   A0A2H1W5H6   A0A194R7K3   + More
A0A0L7QX69   A0A088A0P9   A0A067R015   A0A2J7QYZ6   D6WN74   A0A1B6GJ52   A0A1B6HU03   A0A0N0BL31   A0A1Y1NCQ2   E2AFR1   A0A026WKH8   J3JZI8   A0A195CTR9   A0A154P0R6   A0A1B6MM13   A0A0M5IWI2   A0A2A3EQY6   E2C0J3   B4LVD1   B4KHS4   A0A0J7L5W8   A0A151JQZ6   A0A158NTU6   B4JPZ0   A0A1W4UFZ1   A0A3B0KDE6   B5DHX4   B4G786   M9PCM4   B3MJI1   B4MUC1   A0A0L0C7U4   B3N9Q3   B4Q9A4   P29052   E0VNE5   A0A232FA54   K7IUT4   B4NZP8   A0A1I8M1Y3   A0A224XSR1   B4HWP7   A0A1I8Q423   A0A195BMG1   A0A195FQY2   A0A151WLM7   A0A0P4VST3   A0A0V0G6F3   A0A1L8DH73   B0WI57   E9IQ81   A0A1S3DGN6   A0A1Q3FWI8   A0A023EPE7   A0A336KY44   Q17AB8   A0A1A9UNQ2   U5EXJ6   A0A1A9ZXG2   A0A1A9W0P8   D3TNF6   A0A1A9XTY1   A0A1B0C246   A0A0K8TRN1   Q17AB9   A0A146LAR9   A0A182GZI9   A0A1B6CE83   A0A182RPR5   A0A182IDZ9   A0A182XCM3   A0A182VV34   A0A0K8W6R6   A0A0K8U1S1   A0A034WT36   A0A034WUD8   W8C7B0   A0A182MQF3   Q7QG89   A0A182UP06   A0A182J3Y5   A0A182NLK2   A0A182L5U4   A0A182Q327   A0A182PB41   A0A182Y5Q4   A0A2M3ZA79   A0A2M4AM58   A0A2M4BUK3   W5J5M4   A0A182F210   A0A1J1HJN0   A0A0P6AIJ9   A0A0P5DJT8  

PDB

6O9L     E-value=1.17099e-134,     Score=1228

KEGG

101739506    K03124 transcription initiation factor TFIIB | (RefSeq) transcription initiation factor IIB

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0070897   GO:0006355   GO:0046872   GO:0017025   GO:0003743   GO:0005634   GO:0001174   GO:0097550   GO:0008134   GO:0001139   GO:0000979   GO:0006352   GO:0051123   GO:0051101   GO:0006357   GO:0006367   GO:0006904   GO:0000145   GO:0016021   GO:0008270   GO:0006396   GO:0030529   GO:0016020   GO:0005515   GO:0003779  

PANTHER

PTHR11618  

Subcellular location

Nucleus  

Length:

315

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02887

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05427

outside

1  -  315

 

 

Pi

189.121431

Theta

177.147081

Tajima's D

0.229229

CLR

0.745688

CSRT

0.433578321083946

Interpretation

Uncertain