SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01744
Annotation
Zinc_finger_DNA_binding_protein_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 4.185
 

Sequence

CDS
ATGTCTCCTACGCATAAATACGGTTGCTGTTCCAGTCGAGCTGCTGCCACTGAGGTACTGAAATGTTGTGAATGCAAGATTCCACACCACTACGGATGTATTGATGGACCTGGGAAAAAACAATTCAAAGACCTTTCAGCTGACGTTAAATCATCGTGGATCTGTCCGTTGTGCGTGGTCAAGAGACCTAAATCTGACGTTTACGAACATCATGTGACTCTGCGCAAGAAGGACGCTGTTATTACTCATACGAGCTTAAATGATTTCCGCTCAATGATCCGTGAAGAGGTGTCCACCTTGTTGGATGAATTTAGAGCAAACATTCTCCGCCAGTTCGACCTACAAAGCACTGAAGTATTGAATCGTCTGAGTCGTGTTGATGATGCTCTGAGTAACTTACAGGTAAAATATGAAGAGGTAAAAAAGGATCTCAGTGACAAAACGAATATAATCACCATCCTGGAATCTGAAAACCAAGATTTAAAATCCACAATTATGGACTTGAGCTCCCGGTTGTCTAGGATCGACCAGTACTCACGATCAAGCAACATAGAAATACAGTGTATACCCGAATTTAAGTCTGAAAACCTGAACTCAACATTAAAGCAACTTGCTAATACAATAAATTATAATTTGAATGAAGCTGACATCCATATCTGCAAGAGGACATCCAAGTTAAGCAAGGAGAACAAACGCCCCCGCTCCGTCTTCGTCAAGTTTAGCTGCCCTAGAGTACGCGACGAGTTCCTGGCTGCCACCATCACGTTCAACAAGAGGGTTACTTCCAAAGCTGACAAGCTCAACTCCAGTCACCTGGGAATAGCGGGCGAGCGACGTCCTATCTACGTCTGCGAGCACCTGACACCTGCTATGAAAAATGTTCATGCGGCTGCTAGAGCAAAAGCTAAGGACCTAAATTATAAGTTCGTGTGGGTCAAAGGCGGTAATGTCTATATGCGCAAAACAGAATCTTCAGAATACAAGTTAATTAAATCAGTTGAATCTTTATCACTATTAGAGTGA
Protein
MSPTHKYGCCSSRAAATEVLKCCECKIPHHYGCIDGPGKKQFKDLSADVKSSWICPLCVVKRPKSDVYEHHVTLRKKDAVITHTSLNDFRSMIREEVSTLLDEFRANILRQFDLQSTEVLNRLSRVDDALSNLQVKYEEVKKDLSDKTNIITILESENQDLKSTIMDLSSRLSRIDQYSRSSNIEIQCIPEFKSENLNSTLKQLANTINYNLNEADIHICKRTSKLSKENKRPRSVFVKFSCPRVRDEFLAATITFNKRVTSKADKLNSSHLGIAGERRPIYVCEHLTPAMKNVHAAARAKAKDLNYKFVWVKGGNVYMRKTESSEYKLIKSVESLSLLE

Summary

Similarity
Belongs to the mitochondrial carrier (TC 2.A.29) family.
EMBL
JTDY01010989    KOB57787.1    JTDY01007401    KOB65231.1    KOB57786.1    ODYU01007238    + More
SOQ49844.1    ODYU01000349    SOQ34960.1    ODYU01002971    SOQ41143.1    JTDY01012405    KOB52279.1    NWSH01002032    PCG69366.1    JTDY01003733    KOB69075.1    NWSH01000267    PCG77878.1    KZ149914    PZC78000.1    KQ459054    KPJ03878.1    NWSH01005702    PCG64035.1    JTDY01001361    KOB74078.1    JTDY01003535    KOB69383.1    NWSH01007563    PCG62908.1    ODYU01007128    SOQ49629.1    NWSH01007173    PCG63054.1    JTDY01001411    KOB73935.1    JTDY01005854    KOB66545.1    NWSH01004587    PCG64890.1    NWSH01005418    PCG64228.1    JTDY01003264    KOB69846.1    ODYU01001881    SOQ38706.1    AGBW02012032    OWR45776.1    NWSH01002191    PCG68944.1    NWSH01006948    PCG63178.1    JTDY01014577    KOB52017.1    ODYU01001557    SOQ37940.1    ODYU01004037    SOQ43507.1    NWSH01004298    PCG65247.1    JTDY01005451    KOB66988.1    NWSH01005479    PCG64170.1    ODYU01005672    SOQ46768.1    NWSH01001819    PCG70025.1    ODYU01006462    SOQ48321.1    ODYU01012049    SOQ58146.1    JTDY01000136    KOB78669.1    JTDY01013334    JTDY01001687    KOB52155.1    KOB73157.1    JTDY01000280    KOB77936.1    NWSH01000216    PCG78307.1    GEZM01097808    JAV54094.1    GBHO01033077    JAG10527.1    KZ149893    PZC78914.1    ODYU01010507    SOQ55661.1    GBRD01009465    JAG56359.1    GBHO01013672    JAG29932.1    ODYU01008890    SOQ52873.1    NWSH01000638    PCG75103.1    NWSH01004492    PCG65047.1    GECU01002092    JAT05615.1    JTDY01000678    KOB76257.1    NWSH01000830    PCG73963.1    ABLF02002574    ABLF02065803    ABLF02065804    GEZM01021253    JAV89053.1    ODYU01012701    SOQ59142.1    ODYU01011375    SOQ57082.1    GFWV01006244    MAA30974.1    JTDY01001455    KOB73826.1    KZ150197    PZC72320.1    GEBQ01021483    JAT18494.1    LADJ01030744    KPJ21224.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF03258   Baculo_FP
PF00153   Mito_carr
PF00628   PHD
PF00005   ABC_tran
Interpro
IPR019786   Zinc_finger_PHD-type_CS        + More
IPR011011   Znf_FYVE_PHD       
IPR004244   Transposase_22       
IPR013083   Znf_RING/FYVE/PHD       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR019787   Znf_PHD-finger       
IPR001841   Znf_RING       
IPR004941   Baculo_FP       
IPR001965   Znf_PHD       
IPR002067   Mit_carrier       
IPR018108   Mitochondrial_sb/sol_carrier       
IPR023395   Mt_carrier_dom_sf       
IPR003593   AAA+_ATPase       
IPR026082   ABCA       
IPR003439   ABC_transporter-like       
IPR027417   P-loop_NTPase       
SUPFAM
SSF57903   SSF57903        + More
SSF56219   SSF56219       
SSF103506   SSF103506       
SSF52540   SSF52540       
Gene 3D

Ontologies

Topology

Length:
340
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.03100
outside
1  -  340
 
 

Population Genetic Test Statistics

Pi
176.743413
Theta
173.015278
Tajima's D
0.067784
CLR
1.246818
CSRT
0.389830508474576
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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