Gene

KWMTBOMO01728

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr4(+):2606473-2607387      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.345

CDS

ATGGGGGTGGTGCGGTCGATGGCACTATACGGCGCGCCCGTATGGTGCCACGCCCTGACCCGCCAGAACGTCGCCGCGCTGCGACGTCCGCAGCGCGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGTAGCGACCTCCGCTCTAGGGGGGAAGGGCGCCCCAGCGAAGGTGTAGTTCGAGCGCGGAGGCTCCACTCTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGAACCGTCGAGGCGGTCCGTCCGGTTCTCGCGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTGACGCAGATGTTGACCGGCCATGGGTGTTTTGGCCGGTACCTATTTAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCGGACCGCGACGAGGAAGACACAGCGGAACATACATTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATAGGTGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATATCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCCCCTGTAG

Protein

MGVVRSMALYGAPVWCHALTRQNVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSDLRSRGEGRPSEGVVRARRLHSRRSVLEAWSRRLADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSRPL

Uniprot

Q5KTM7   Q868Q4   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   Q8MY27   + More
Q8MY31   Q8MY33   Q8MY35   A0A0J7N1D9   A0A0J7KCI1   A0A2W1C3J5   A0A2H1WNZ5   A0A0J7N7H9   O01419   A0A0J7KJB9   A0A0J7MZM4   A0A194R5D3   A0A0J7MY07   A0A0J7KCQ3   A0A0J7KIY3   A0A3L8DDS1   A0A0J7KS67   A0A0J7KIY5   E2BVR6   A0A3L8DDV9   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KIW1   A0A0J7NEG9   A0A0J7KJG6   A0A0J7KM81   A0A0J7JXN3   A0A0J7KLT9   A0A0J7N7S8   A0A3L8D2G3   A0A0J7KJH4   A0A0J7KQK3   A0A0L7R7C3   A0A0J7KIM6   A0A0J7KL06   A0A0J7KFG9   A0A0J7KPZ3   A0A0J7K3R6   A0A0J7K840   A0A0J7K3F1   A0A0J7NMN5   A0A0J7KJ07   A0A0J7KRB8   J9KZ24   A0A0J7KF37   A0A0J7KYD2   V5I8F3   A0A0J7KMU1   A0A3L8DIL1   A0A0J7MX22   A0A0J7KPR0   A0A0J7NAV8   A0A0Q9WRU0   A0A0J7KHX7   J9KJG8   A0A2S2P557   A0A2H8TR36   A0A2S2Q1A1   X1WJY4   E2A7V5   J9LJ80   A0A2S2NKA7   A0A0J7KWU5   A0A1B6HLL2   J9KLZ3   J9KRD0   A0A2S2P6S8   J9LDW8   J9KV04   A0A0J7K6Z4   A0A0J7NCZ4   A0A2S2QUS9   A0A2S2P334  

Pubmed

12644555    28756777    9092665    26354079    30249741    20798317    + More
17994087   

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    KZ150386    PZC71062.1    + More
KZ150308    PZC71477.1    KZ149950    PZC76665.1    AB078935    BAC06462.1    AB078931    BAC06456.1    AB078930    BAC06454.1    AB078929    BAC06452.1    LBMM01012027    KMQ86470.1    LBMM01009501    KMQ88083.1    KZ149896    PZC78733.1    ODYU01009945    SOQ54696.1    LBMM01008861    KMQ88580.1    D85594    BAA19776.1    LBMM01006538    KMQ90523.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    KQ460685    KPJ12887.1    LBMM01014132    KMQ85305.1    LBMM01009494    KMQ88097.1    LBMM01006909    KMQ90209.1    QOIP01000009    RLU18544.1    LBMM01003679    KMQ93242.1    LBMM01006954    KMQ90166.1    GL450953    EFN80213.1    QOIP01000010    RLU18098.1    LBMM01019838    KMQ83439.1    LBMM01019839    KMQ83438.1    LBMM01006725    KMQ90373.1    LBMM01006110    KMQ90925.1    LBMM01006671    KMQ90407.1    LBMM01005634    KMQ91349.1    LBMM01024024    KMQ82631.1    LBMM01005733    KMQ91252.1    LBMM01008682    KMQ88705.1    QOIP01000031    RLU14697.1    LBMM01006657    KMQ90417.1    LBMM01004272    KMQ92618.1    KQ414641    KOC66782.1    LBMM01007036    KMQ90099.1    LBMM01006063    KMQ90967.1    LBMM01008349    KMQ88951.1    LBMM01004505    KMQ92346.1    LBMM01015018    KMQ84954.1    LBMM01011877    KMQ86578.1    LBMM01015025    KMQ84953.1    LBMM01003245    KMQ93755.1    LBMM01006662    KMQ90413.1    LBMM01003988    KMQ92922.1    ABLF02006132    LBMM01008448    KMQ88867.1    LBMM01002052    KMQ95336.1    GALX01004785    JAB63681.1    LBMM01005216    KMQ91703.1    QOIP01000007    RLU20280.1    LBMM01014909    KMQ85000.1    LBMM01004634    KMQ92224.1    LBMM01007425    KMQ89740.1    CH963857    KRF98317.1    LBMM01007088    KMQ90053.1    ABLF02041886    GGMR01011974    MBY24593.1    GFXV01003903    MBW15708.1    GGMS01002352    MBY71555.1    ABLF02011238    GL437417    EFN70484.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    GGMR01005002    MBY17621.1    LBMM01002480    KMQ94776.1    GECU01032129    JAS75577.1    ABLF02023401    ABLF02029423    ABLF02060278    ABLF02026677    ABLF02032994    ABLF02059021    ABLF02064578    GGMR01012534    MBY25153.1    ABLF02016435    ABLF02016436    ABLF02064751    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    LBMM01012595    KMQ86127.1    LBMM01006640    KMQ90440.1    GGMS01012210    MBY81413.1    GGMR01011282    MBY23901.1   

Proteomes

UP000036403    UP000053240    UP000279307    UP000008237    UP000053825    UP000007819    + More
UP000007798    UP000000311   

PRIDE

Q5KTM7    Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF17919   RT_RNaseH_2
PF00098   zf-CCHC
PF13843   DDE_Tnp_1_7
PF05699   Dimer_Tnp_hAT

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       
IPR029526   PGBD       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       
SSF140996   SSF140996       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q5KTM7   Q868Q4   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   Q8MY27   + More
Q8MY31   Q8MY33   Q8MY35   A0A0J7N1D9   A0A0J7KCI1   A0A2W1C3J5   A0A2H1WNZ5   A0A0J7N7H9   O01419   A0A0J7KJB9   A0A0J7MZM4   A0A194R5D3   A0A0J7MY07   A0A0J7KCQ3   A0A0J7KIY3   A0A3L8DDS1   A0A0J7KS67   A0A0J7KIY5   E2BVR6   A0A3L8DDV9   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KIW1   A0A0J7NEG9   A0A0J7KJG6   A0A0J7KM81   A0A0J7JXN3   A0A0J7KLT9   A0A0J7N7S8   A0A3L8D2G3   A0A0J7KJH4   A0A0J7KQK3   A0A0L7R7C3   A0A0J7KIM6   A0A0J7KL06   A0A0J7KFG9   A0A0J7KPZ3   A0A0J7K3R6   A0A0J7K840   A0A0J7K3F1   A0A0J7NMN5   A0A0J7KJ07   A0A0J7KRB8   J9KZ24   A0A0J7KF37   A0A0J7KYD2   V5I8F3   A0A0J7KMU1   A0A3L8DIL1   A0A0J7MX22   A0A0J7KPR0   A0A0J7NAV8   A0A0Q9WRU0   A0A0J7KHX7   J9KJG8   A0A2S2P557   A0A2H8TR36   A0A2S2Q1A1   X1WJY4   E2A7V5   J9LJ80   A0A2S2NKA7   A0A0J7KWU5   A0A1B6HLL2   J9KLZ3   J9KRD0   A0A2S2P6S8   J9LDW8   J9KV04   A0A0J7K6Z4   A0A0J7NCZ4   A0A2S2QUS9   A0A2S2P334  

PDB

4XVM     E-value=0.0600234,     Score=83

KEGG

105841899    no KO assigned | (RefSeq) uncharacterized LOC105841899

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676   GO:0046983  

Length:

268

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03541

Exp number, first 60 AAs:

0.02965

Total prob of N-in:

0.03705

outside

1  -  268

 

 

Pi

39.015542

Theta

30.712993

Tajima's D

0.833014

CLR

4.688011

CSRT

0.614869256537173

Interpretation

Uncertain