Gene

KWMTBOMO01720  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006022

Annotation

PREDICTED:_la_protein_homolog_[Papilio_polytes]

Location

Bomo_Chr4(-):2366558-2370614      View in EpiBrowser

Full name

La protein homolog      

Alternative Name

La autoantigen homolog
La ribonucleoprotein

Location in the cell

Mitochondrial   Reliability : 1.147

CDS

ATGACTGAGGACAAAGAGGTAACTGTTGAAACCAATGGACAAGAGGAGAACGCGAAAATCGAAAATTCAGAAGACGAAACCGAATTGGATATTGCGATTATTCGGCAAGTCGAATATTATTTTGGTGATGTAAATCTACATCGAGATAAATTTCTGCAAGAACAAATAAAATTAGATGATGGATGGGTTCCATTAGAAACTCTCACAAAATTCAACCGCCTTGCCAAACTGACAGAGGACACAGATGTCATCGCAAATGCTCTTAACAAATCTACAAGTGGATTATTGGAGGTTTCTGAAGATAACAAAAAAGTGAGACGTAATCCAGAACAGCCACTGCCAGAAATGAACGAGGAGCTTCGTAAAGAAATATGCAACAGATCAATTTACGCCAAAGGATTTGCTAAAGATGCCTCATTAGATGATTTATTAACTTACTTCAAGCAGTTTCAGGAAGTTGAGAATGTAATTATGAGAAGATACGTTGAGAAATCCACAAAGAAACGCTTGTTCAAGGGTTCTGTATTTGCTACATTCAAGACTAGAGAACAGGCAGAAAAGTTTATGAATGCAAAAGGGCACAAGTATGGAGATAATGAACTGTTAACACTCTGGCAGGAAGATTACTTACAGCAGAAACAAGAAGAATATTCAGATAGGAAAGATAAGAAAGAAAAAAAGAACAAAGACAAAGAAGGTCAACAACAACAAGAAAAGGAAGAATTAAAATTACCAACAGGCAGCGTCTTTCACTTTAGTGAAGTCAATGAGAAAATGAAGAGAGAGGACTTAAAGGATGCTCTCACTAAATTAGGTGCCGAGGTCGCATACATTGATTTCAAATCTGGTGACACCGAAGGTTGGGTGAGACTGTCTAAAGAAAACGCCGCTAAAGAAATGGTTGAAAAGATTGAAGATGGAAAGATTAAGATATGCGATTCTGAGGTCATCTTCAAACTGCTTGAAGGTGACGATGAGAAAGCGTATCTCGCCAAAACCGTGGAAGAGATGACAAAAAAACGCAGGAACATGAGGAATAACAAGTTCGGTAAAGGAAAGAATTTCAAAGGGAGACAAGGCGGTAGAAAGAGAAAGCCCGAAAATAATGAAGAGGCACCTCCAAAGAAAGTCCAAGCGCAGTAA

Protein

MTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLTYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTREQAEKFMNAKGHKYGDNELLTLWQEDYLQQKQEEYSDRKDKKEKKNKDKEGQQQQEKEELKLPTGSVFHFSEVNEKMKREDLKDALTKLGAEVAYIDFKSGDTEGWVRLSKENAAKEMVEKIEDGKIKICDSEVIFKLLEGDDEKAYLAKTVEEMTKKRRNMRNNKFGKGKNFKGRQGGRKRKPENNEEAPPKKVQAQ

Keywords

Complete proteome   Cytoplasm   Direct protein sequencing   DNA-binding   Nucleus   RNA-binding   Phosphoprotein   Reference proteome  

Feature

chain  La protein homolog

Uniprot

H9J930   S4PM96   A0A2A4K9D6   A0A194PZT0   A0A1E1WJX8   A0A2H1VAV5   + More
A0A212F1K7   A0A194R7I4   A0A0L7L2T9   A0A2J7RNY9   A0A1A9V9H4   A0A0K8TR23   A0A067RR68   A0A0L7QYN8   A0A023ESL0   A0A2P1CZU6   Q26457   Q17EQ5   A0A1Q3EYZ4   A0A2P8ZE44   A0A182XNV3   A0A182LMN7   A0A182UQF3   A0A182NUR2   A0A1I8MGT2   A0A084WQG4   A0A1S4H0H4   T1PLS0   T1PF26   A0A182QIZ7   Q7PWI4   A0A182UAZ6   A0A182I7F8   A0A182WGA0   A0A182Y0F9   A0A310S9Y5   A0A1I8PMY0   A0A182M090   A0A1S4GZP2   A0A087ZV19   A0A182SJR0   A0A336MLJ0   A0A182PMG2   A0A2M4BPY6   U5EWY9   A0A1J1INK7   A0A2M4BPX1   F4X2J9   A0A2M4BPY4   A0A182F518   W5JIJ5   A0A2M3ZGI0   A0A182RJY5   A0A1A9VZX2   A0A182J5A7   A0A2M3Z2Z3   A0A2M4A8L7   A0A151WFT6   A0A2M4A818   A0A0K8SHC6   A0A0A9Z105   R4G871   T1HK27   A0A0A1X850   A0A0A1XMC9   B4MZ98   B4LUX1   B4KLF7   A0A1W4VYE0   A0A3B0K9V4   A0A2A3E751   B4JQS4   Q17EQ4   A0A1B6G0Z5   B3NM23   B4GSU5   W8B6M8   Q29KT4   B3MK57   A0A1L8ECY4   A0A1L8EI94   A0A2R7X2T5   A0A0K8V0C7   A0A0V0G4S3   A0A0L0BSE1   A0A023F821   B4PBJ8   Q8T8V5   M9ZVK8   P40796   A0A0P4WG71   A0A069DU10   G3X0V4   B4QAI9   F6ZY45   B4IFB3   A0A0J9TS05   A0A1B6HL46   A0A2G8LGW5   A0A0M4EA98  

Pubmed

19121390    23622113    26354079    22118469    26227816    26369729    + More
24845553    24945155    26483478    8551578    17510324    29403074    20966253    25315136    24438588    12364791    25244985    21719571    20920257    23761445    25401762    26823975    25830018    17994087    24495485    15632085    26108605    25474469    17550304    8035794    8035818    10731132    12537572    17372656    26334808    21709235    22936249    17495919    29023486   

EMBL

BABH01004521    GAIX01003690    JAA88870.1    NWSH01000036    PCG80403.1    KQ459584    + More
KPI98543.1    GDQN01003769    JAT87285.1    ODYU01001572    SOQ37975.1    AGBW02010853    OWR47625.1    KQ460855    KPJ11831.1    JTDY01003326    KOB69735.1    NEVH01002144    PNF42544.1    GDAI01000784    JAI16819.1    KK852514    KDR22239.1    KQ414687    KOC63739.1    JXUM01002956    GAPW01001832    KQ560147    JAC11766.1    KXJ84170.1    MG917091    AVK51577.1    S80954    CH477279    EAT45047.1    GFDL01014587    JAV20458.1    PYGN01000083    PSN54777.1    ATLV01025608    KE525396    KFB52458.1    AAAB01008984    KA649674    AFP64303.1    KA646760    AFP61389.1    AXCN02000739    EAA14810.4    APCN01003394    KQ762518    OAD55778.1    AXCM01002875    UFQS01001299    UFQT01001299    SSX10168.1    SSX29889.1    GGFJ01005989    MBW55130.1    GANO01001206    JAB58665.1    CVRI01000054    CRL00678.1    GGFJ01005923    MBW55064.1    GL888584    EGI59324.1    GGFJ01005988    MBW55129.1    ADMH02001374    ETN62720.1    GGFM01006926    MBW27677.1    GGFM01002102    MBW22853.1    GGFK01003637    MBW36958.1    KQ983203    KYQ46704.1    GGFK01003616    MBW36937.1    GBRD01013135    JAG52691.1    GBHO01006571    GDHC01012898    JAG37033.1    JAQ05731.1    GAHY01001482    JAA76028.1    ACPB03001100    GBXI01007464    JAD06828.1    GBXI01001813    JAD12479.1    CH963913    EDW77371.1    CH940649    EDW64298.1    CH933807    EDW12838.1    OUUW01000006    SPP81811.1    KZ288345    PBC27593.1    CH916372    EDV99254.1    EAT45048.1    GECZ01025488    GECZ01021773    GECZ01013650    JAS44281.1    JAS47996.1    JAS56119.1    CH954179    EDV54559.1    CH479189    EDW25454.1    GAMC01012288    JAB94267.1    CH379061    EAL33090.1    CH902620    EDV31475.1    GFDG01002304    JAV16495.1    GFDG01000470    JAV18329.1    KK856619    PTY26108.1    GDHF01020013    JAI32301.1    GECL01003110    JAP03014.1    JRES01001431    KNC22962.1    GBBI01001333    JAC17379.1    CM000158    EDW90512.1    AY075257    AAL68124.1    BT150066    AGK36637.1    U07652    L32988    AE014134    GDRN01056480    JAI65817.1    GBGD01001633    JAC87256.1    AEFK01112065    CM000361    CM002910    EDX05606.1    KMY91149.1    CH480833    EDW46335.1    KMY91150.1    GECU01032317    JAS75389.1    MRZV01000081    PIK59498.1    CP012523    ALC38110.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000037510    + More
UP000235965    UP000078200    UP000027135    UP000053825    UP000069940    UP000249989    UP000008820    UP000245037    UP000076407    UP000075882    UP000075903    UP000075884    UP000095301    UP000030765    UP000075886    UP000007062    UP000075902    UP000075840    UP000075920    UP000076408    UP000095300    UP000075883    UP000005203    UP000075901    UP000075885    UP000183832    UP000007755    UP000069272    UP000000673    UP000075900    UP000091820    UP000075880    UP000075809    UP000015103    UP000007798    UP000008792    UP000009192    UP000192221    UP000268350    UP000242457    UP000001070    UP000008711    UP000008744    UP000001819    UP000007801    UP000037069    UP000002282    UP000000803    UP000007648    UP000000304    UP000002280    UP000001292    UP000230750    UP000092553   

PRIDE

H9J930    A0A087ZV19    Q8T8V5    P40796   

Pfam

PF05383   La        + More
PF00076   RRM_1
PF08777   RRM_3

Interpro

IPR000504   RRM_dom        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR006630   La_HTH       
IPR002344   Lupus_La       
IPR014886   La_RRM       
IPR036388   WH-like_DNA-bd_sf       
IPR035979   RBD_domain_sf       
IPR036390   WH_DNA-bd_sf       

SUPFAM

SSF46785   SSF46785        + More
SSF54928   SSF54928       

Gene 3D

1.10.10.10     3.30.70.330    

ProteinModelPortal

H9J930   S4PM96   A0A2A4K9D6   A0A194PZT0   A0A1E1WJX8   A0A2H1VAV5   + More
A0A212F1K7   A0A194R7I4   A0A0L7L2T9   A0A2J7RNY9   A0A1A9V9H4   A0A0K8TR23   A0A067RR68   A0A0L7QYN8   A0A023ESL0   A0A2P1CZU6   Q26457   Q17EQ5   A0A1Q3EYZ4   A0A2P8ZE44   A0A182XNV3   A0A182LMN7   A0A182UQF3   A0A182NUR2   A0A1I8MGT2   A0A084WQG4   A0A1S4H0H4   T1PLS0   T1PF26   A0A182QIZ7   Q7PWI4   A0A182UAZ6   A0A182I7F8   A0A182WGA0   A0A182Y0F9   A0A310S9Y5   A0A1I8PMY0   A0A182M090   A0A1S4GZP2   A0A087ZV19   A0A182SJR0   A0A336MLJ0   A0A182PMG2   A0A2M4BPY6   U5EWY9   A0A1J1INK7   A0A2M4BPX1   F4X2J9   A0A2M4BPY4   A0A182F518   W5JIJ5   A0A2M3ZGI0   A0A182RJY5   A0A1A9VZX2   A0A182J5A7   A0A2M3Z2Z3   A0A2M4A8L7   A0A151WFT6   A0A2M4A818   A0A0K8SHC6   A0A0A9Z105   R4G871   T1HK27   A0A0A1X850   A0A0A1XMC9   B4MZ98   B4LUX1   B4KLF7   A0A1W4VYE0   A0A3B0K9V4   A0A2A3E751   B4JQS4   Q17EQ4   A0A1B6G0Z5   B3NM23   B4GSU5   W8B6M8   Q29KT4   B3MK57   A0A1L8ECY4   A0A1L8EI94   A0A2R7X2T5   A0A0K8V0C7   A0A0V0G4S3   A0A0L0BSE1   A0A023F821   B4PBJ8   Q8T8V5   M9ZVK8   P40796   A0A0P4WG71   A0A069DU10   G3X0V4   B4QAI9   F6ZY45   B4IFB3   A0A0J9TS05   A0A1B6HL46   A0A2G8LGW5   A0A0M4EA98  

PDB

2VOP     E-value=1.24475e-43,     Score=444

KEGG

101738262    K11090 lupus La protein | (RefSeq) la protein homolog

GO

GO:1990904   GO:0003723   GO:0006396   GO:0005634   GO:0005737   GO:0003677   GO:0000791   GO:0008098   GO:0003729   GO:0008266   GO:1990825   GO:0006409   GO:0001682   GO:0071045   GO:0000049   GO:0042780   GO:0075522   GO:1903608   GO:0003676   GO:0000166   GO:0030529   GO:0016020   GO:0005515   GO:0003779   GO:0016021  

Subcellular location

Nucleus  
Cytoplasm  

Length:

380

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02252

outside

1  -  380

 

 

Pi

26.915482

Theta

25.393793

Tajima's D

0.150794

CLR

1.70468

CSRT

0.418879056047198

Interpretation

Uncertain