Gene

KWMTBOMO01709

Pre Gene Modal

BGIBMGA006123

Annotation

PREDICTED:_endonuclease/exonuclease/phosphatase_family_domain-containing_protein_1-like_[Papilio_machaon]

Location

Bomo_Chr4(+):2191095-2218903      View in EpiBrowser

Full name

Endonuclease/exonuclease/phosphatase family domain-containing protein 1      

Location in the cell

Mitochondrial   Reliability : 2.292 Nuclear   Reliability : 2.005

CDS

ATGGGGCAAAGTCCGAGCTCAATGAGGAACAAGAACGGTCGACACCGATCGTTCAGGAGTTTCGTAAGGCGAAGCAAATTGAACAAATCTAGCTTGAGCCATACGTTCAGTTTGCCGCCTTCAGAGGAGTATCCGGAGCTAATGAACATCAATGCAGCAACTGAGGAACAGCTGATGACCCTTCCGGGCGTGAACAGGCAACTGGCTCGAGAGATAGTACGCCACAGACAGATGATAGGTCGTTTTAAGAGAGTTGATGACCTTGCATTAGTCTCAGGTATTGGAGCTGATAAACTAGAATTACTGAGACCAGAAATATGTACGCACACAAGGAAACAGTTGTCACGGGCCAGCTCCTGTGCACACTCATTAGATAGCATACGTTTGCCCTCTGAAAGCAGACTATGTTCTATCAATTCATCCAGTGTGTTCCAACTGCAGTGTGTGCCTGGACTCAACCAAGAAATAGCTGCAAATATTGTAGATTACCGTAATAGAAAAGGGCCTTTCAAATCATTGGATGATTTAATAAAAGTTCGTGGTATGGATATTGTCAGGCTAAGTACAGTAAAACAACACTTGAGCCTGGAGTTACGTAAATCTGAAAGTGTCCAGCACTTAACTAATGGCCATGTAAATGGATGGAATGATGATAACATGCTCCAACAAAATGGAATTTCTCCAAAGACGCCACATCGAAAAAGTTTATCAATGCCAACAAAATTGACGTTACCCAATGGCTTTGCCACTGCTCCAGTAAATGATATTCTAGATTTACTCTCAGCTTATTCACATAGGCCAGTTGTAGAGGAAGTTTTCACATATGAAAGAGATGGTATTCGGTGCTGTCGACTGGCATCTTGGAATCTTCATCAGCTTAGTATAGACAAAATATCGAATCCTGGAGTGAGAGAGGTTATTTGTCGAACCATTTTAGAAAACAAATTATCGCTAATAGCCATCCAAGACATATTGAACGAGGCTGCTCTTAAAGTAATATGCGATGAGCTGAATTCTCCCGTACTAAGAAGGGTCAAAGAGTGGAAGAACAATGGGCACAAGTGGGAGTATCGTGTTTCAGGGACAAAGAACAGCCAACAACTCGGTTTTGTCTACGACTCGTCGCTGAAGGGGGTCACGGTTGAAGATATAGAGCTGGACCAGGTCTGTTTGCTGACCGAGGCCAGCGACATCAGAAGGCTTCTCTCCGAGCTGACCGCGTTGAGGAGCGACAGATATACTGCTGAGCCGCAGGCATTCCTGCTCTGCGGCAGGCCGCTGATAGCCGTGAACGTGATGTGCAGAGATCGGCTCAGCGCCGCAGACTGCGACCGGCTGGCGACCGTGGCGGCTCTAGCGGAATCCACAAAACTGAACGTGGTATTCATGGGCGAATTCCGAAACAAAGAAAACGTTCTCCAATTGAAATCGTATCAATCGATCCTTGACGAAGACTTGCCGACGACCGTGGACGCGAACGCGCTCGGCCAAAGTTTTATTTTATGTCCTGGCAACATTGAAACGAGCGGCTTCAACGGCCACTCGGGAGCCGTCAAAACTGGGTTGTGCCATCTGGCAATACCGCGAGGCTGGTCGTGGGGCGGGCCCGCGTCGCCCTTCTGTCCCATCTGGGCCGAACTCAAAGTTCCAGATTGA

Protein

MGQSPSSMRNKNGRHRSFRSFVRRSKLNKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLELRKSESVQHLTNGHVNGWNDDNMLQQNGISPKTPHRKSLSMPTKLTLPNGFATAPVNDILDLLSAYSHRPVVEEVFTYERDGIRCCRLASWNLHQLSIDKISNPGVREVICRTILENKLSLIAIQDILNEAALKVICDELNSPVLRRVKEWKNNGHKWEYRVSGTKNSQQLGFVYDSSLKGVTVEDIELDQVCLLTEASDIRRLLSELTALRSDRYTAEPQAFLLCGRPLIAVNVMCRDRLSAADCDRLATVAALAESTKLNVVFMGEFRNKENVLQLKSYQSILDEDLPTTVDANALGQSFILCPGNIETSGFNGHSGAVKTGLCHLAIPRGWSWGGPASPFCPIWAELKVPD

Keywords

Complete proteome   Lipoprotein   Myristate   Phosphoprotein   Polymorphism   Reference proteome  

Feature

chain  Endonuclease/exonuclease/phosphatase family domain-containing protein 1
sequence variant  In dbSNP:rs196586.

Uniprot

A0A2A4K902   A0A2A4K839   A0A212F1N1   A0A194R6C6   A0A194Q0L2   D6WM33   + More
A0A1Y1KPQ0   A0A067R0L0   A0A2J7QBP3   U4UFI9   N6ULH6   A0A1B0C9M2   A0A1L8DQ98   A0A1L8DQC5   A0A1B6CQC6   A0A2P8XG88   A0A2J7QBQ2   A0A1B6JDK5   A0A087U0E5   A0A0V0GBW2   U5EZN7   A0A023EWW0   T1ISV2   A0A2P6LCC4   A0A0P4WH03   A0A0A9WQ49   A0A0A9WGQ5   A0A1D2NCU1   A0A0P4VY66   A0A2T7NGZ2   A0A0C9RHX9   A0A226F3J0   H3BHH1   A0A0P6J4J6   G5BAX9   W5P3Z5   A0A2J8UNP6   A0A2I3MLA8   G1QN22   G1SNA6   F7IHT9   A0A2K5HLP8   Q7L9B9   A0A091D7X8   A0A2K5MK69   A0A2K6BQD6   A0A2K5VK53   F7G8W8   F7CZ53   A0A2K5YVP1   G3QR97   A0A2R9BXX1   A0A0D9RR75   A0A2J8JDY3   Q3TGW2   G7MLH6   A0A2U3ZYA5   A0A2K6S0K3   A0A2K5QLF2   L8IXJ7   Q3MHJ7   A0A1D5NVM3   Q5XI74   A0A287BQI4   A0A2K5EMG9   A0A2K6KWL4   H0UVM7   A0A0Q3RA47   G3HTJ3   A0A384A4W9   G3TL67   I3MBP6   W5MJF4   A0A2Y9F995   A0A093HMA1   A0A099Z4L1   M3W817   A0A2K6QJC6   A0A087QQU9   R0LXR4   U3IQ82   H0XIT8   A0A210R0T8   A0A2J8UNQ1   A0A2K6GIP3   A0A1V4J5U1   A0A1U7QGM0   D2HA03   A0A2I0LZG9   A0A2Y9JME7   A0A1S3GQP6   A0A091GJF9   G1L427   A0A151P2I8  

Pubmed

22118469    26354079    18362917    19820115    28004739    24845553    + More
23537049    29403074    25474469    25401762    26823975    27289101    27129103    9215903    21993625    20809919    21993624    25243066    11214970    14702039    12690205    15489334    20213681    23186163    24275569    17431167    19892987    22398555    22722832    16136131    15368895    16141072    17242355    19144319    21183079    22002653    22751099    15592404    22673903    21804562    17975172    25362486    23749191    28812685    20010809    23371554    22293439   

EMBL

NWSH01000036    PCG80398.1    PCG80397.1    AGBW02010853    OWR47631.1    KQ460644    + More
KPJ13222.1    KQ459584    KPI98534.1    KQ971343    EFA04215.1    GEZM01078963    JAV62558.1    KK853129    KDR10992.1    NEVH01016296    PNF26010.1    KB632303    ERL91792.1    APGK01018868    APGK01018869    APGK01018870    KB740085    ENN81526.1    AJWK01002473    AJWK01002474    GFDF01005441    JAV08643.1    GFDF01005445    JAV08639.1    GEDC01021579    JAS15719.1    PYGN01002242    PSN31026.1    PNF26011.1    GECU01016822    GECU01010451    JAS90884.1    JAS97255.1    KK117576    KFM70834.1    GECL01000540    JAP05584.1    GANO01000449    JAB59422.1    GBBI01005105    JAC13607.1    AFFK01018203    JH431448    MWRG01000381    PRD36229.1    GDRN01045475    JAI66853.1    GBHO01036621    GBHO01036619    GBRD01003933    GBRD01003931    GDHC01003353    JAG06983.1    JAG06985.1    JAG61888.1    JAQ15276.1    GBHO01038076    GBHO01036620    GBRD01003934    GBRD01003932    JAG05528.1    JAG06984.1    JAG61887.1    LJIJ01000088    ODN03059.1    GDKW01002072    JAI54523.1    PZQS01000012    PVD20441.1    GBYB01007880    JAG77647.1    LNIX01000001    OXA64017.1    AFYH01010739    AFYH01010740    AFYH01010741    AFYH01010742    GEBF01004476    JAN99156.1    JH169321    EHB06440.1    AMGL01087607    AMGL01087608    AMGL01087609    AMGL01087610    ABGA01296550    ABGA01296551    ABGA01296552    ABGA01296553    ABGA01296554    ABGA01296555    ABGA01296556    NDHI03003451    PNJ46887.1    PNJ46888.1    AHZZ02022766    AHZZ02022767    AHZZ02022768    AHZZ02022769    ADFV01046492    ADFV01046493    ADFV01046494    ADFV01046495    ADFV01046496    ADFV01046497    AAGW02035771    AAGW02035772    GAMT01009820    GAMS01005256    GAMR01009683    GAMQ01002873    GAMP01007128    JAB02041.1    JAB17880.1    JAB24249.1    JAB38978.1    JAB45627.1    AB051493    AK027386    AC007327    AC078841    CH236951    CH471073    BC065518    KN123190    KFO26370.1    AQIA01046564    AQIA01046565    AQIA01046566    JSUE03028441    JSUE03028442    JSUE03028443    JSUE03028444    CABD030050753    CABD030050754    CABD030050755    CABD030050756    CABD030050757    CABD030050758    AJFE02049346    AQIB01018252    AQIB01018253    AQIB01018254    AACZ04038768    NBAG03000465    PNI20978.1    PNI20979.1    AK173239    AK009180    AK168564    BC025571    CM001255    EHH17380.1    JH880479    ELR61166.1    BC105212    AY568574    AADN05000034    BC083816    BC099214    AEMK02000111    AAKN02032248    LMAW01001969    KQK82225.1    JH000700    EGW10577.1    AGTP01012418    AGTP01012419    AGTP01012420    AGTP01012421    AGTP01012422    AGTP01012423    AGTP01012424    AGTP01012425    AHAT01018105    KL206564    KFV83778.1    KL888316    KGL75750.1    AANG04000096    KL225815    KFM03603.1    KB742702    EOB05278.1    ADON01036283    ADON01036284    AAQR03057790    AAQR03057791    AAQR03057792    AAQR03057793    AAQR03057794    AAQR03057795    AAQR03057796    NEDP02000981    OWF54572.1    PNJ46890.1    LSYS01009165    OPJ67365.1    GL192616    EFB15052.1    AKCR02000057    PKK22813.1    KL448200    KFO81284.1    ACTA01090870    ACTA01098870    ACTA01106870    AKHW03001210    KYO43223.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000053268    UP000007266    UP000027135    + More
UP000235965    UP000030742    UP000019118    UP000092461    UP000245037    UP000054359    UP000094527    UP000245119    UP000198287    UP000008672    UP000006813    UP000002356    UP000001595    UP000028761    UP000001073    UP000001811    UP000008225    UP000233080    UP000005640    UP000028990    UP000233060    UP000233120    UP000233100    UP000006718    UP000002281    UP000233140    UP000001519    UP000240080    UP000029965    UP000002277    UP000000589    UP000245340    UP000233220    UP000233040    UP000009136    UP000000539    UP000002494    UP000008227    UP000233020    UP000233180    UP000005447    UP000051836    UP000001075    UP000261681    UP000007646    UP000005215    UP000018468    UP000053584    UP000053641    UP000011712    UP000233200    UP000053286    UP000016666    UP000005225    UP000242188    UP000233160    UP000190648    UP000189706    UP000053872    UP000248482    UP000081671    UP000053760    UP000008912    UP000050525   

PRIDE

Q7L9B9    Q3TGW2    Q3MHJ7    A0A1D5NVM3    Q5XI74    G3HTJ3    + More

Pfam

PF03372   Exo_endo_phos

Interpro

IPR010994   RuvA_2-like        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR003583   Hlx-hairpin-Hlx_DNA-bd_motif       
IPR003105   SRA_YDG       
IPR004509   Competence_ComEA_HhH       
IPR005135   Endo/exonuclease/phosphatase       

SUPFAM

SSF47781   SSF47781        + More
SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2A4K902   A0A2A4K839   A0A212F1N1   A0A194R6C6   A0A194Q0L2   D6WM33   + More
A0A1Y1KPQ0   A0A067R0L0   A0A2J7QBP3   U4UFI9   N6ULH6   A0A1B0C9M2   A0A1L8DQ98   A0A1L8DQC5   A0A1B6CQC6   A0A2P8XG88   A0A2J7QBQ2   A0A1B6JDK5   A0A087U0E5   A0A0V0GBW2   U5EZN7   A0A023EWW0   T1ISV2   A0A2P6LCC4   A0A0P4WH03   A0A0A9WQ49   A0A0A9WGQ5   A0A1D2NCU1   A0A0P4VY66   A0A2T7NGZ2   A0A0C9RHX9   A0A226F3J0   H3BHH1   A0A0P6J4J6   G5BAX9   W5P3Z5   A0A2J8UNP6   A0A2I3MLA8   G1QN22   G1SNA6   F7IHT9   A0A2K5HLP8   Q7L9B9   A0A091D7X8   A0A2K5MK69   A0A2K6BQD6   A0A2K5VK53   F7G8W8   F7CZ53   A0A2K5YVP1   G3QR97   A0A2R9BXX1   A0A0D9RR75   A0A2J8JDY3   Q3TGW2   G7MLH6   A0A2U3ZYA5   A0A2K6S0K3   A0A2K5QLF2   L8IXJ7   Q3MHJ7   A0A1D5NVM3   Q5XI74   A0A287BQI4   A0A2K5EMG9   A0A2K6KWL4   H0UVM7   A0A0Q3RA47   G3HTJ3   A0A384A4W9   G3TL67   I3MBP6   W5MJF4   A0A2Y9F995   A0A093HMA1   A0A099Z4L1   M3W817   A0A2K6QJC6   A0A087QQU9   R0LXR4   U3IQ82   H0XIT8   A0A210R0T8   A0A2J8UNQ1   A0A2K6GIP3   A0A1V4J5U1   A0A1U7QGM0   D2HA03   A0A2I0LZG9   A0A2Y9JME7   A0A1S3GQP6   A0A091GJF9   G1L427   A0A151P2I8  

PDB

2DUY     E-value=5.04517e-05,     Score=113

KEGG

101737308    no KO assigned | (RefSeq) endonuclease/exonuclease/phosphatase family domain-containing protein 1-li

GO

GO:0004519   GO:0004527   GO:0003677   GO:0006281   GO:0005634  

Subcellular location

Nucleus  

Length:

551

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00208

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00127

outside

1  -  551

 

 

Pi

215.267969

Theta

169.214167

Tajima's D

0.759617

CLR

0.399797

CSRT

0.588620568971551

Interpretation

Uncertain