Gene

KWMTBOMO01708  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006121

Annotation

PREDICTED:_cytoplasmic_dynein_1_light_intermediate_chain_2_[Bombyx_mori]

Location

Bomo_Chr4(+):2157375-2179429      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.952

CDS

ATGGATACAAATGGCCAGGCTAACGGGCTTAAATCAAAAAAGAAAGAGAACGGAGACGGCAAAGATAATTTATGGTCTGCTATATTAGAAGAAGTCCAGAATCAAGGGAACACAAAACTACCGTCAAATAAAAATGTCTTAGTACTGGGTGACAACGAAACTGGAAAAACTACCCTAGTGGCAAAGTTGCAAGGTGTTGAAGACCCAAAGAAGGGGTCTGCACTCGAATATGCGTATATAGATGTTAGAGATGAATATCGCGATGATCACACTCGGCTCAGTGTTTGGGTGCTGGATGGTGATCCAGGTCACACTAATCTACTCAAGTTTGCGCTCAGTGAGGAAACATTCCCACACACCCTAGTTATACTCACTGTGGCCATGACCACACCATGGGGTATACTAGACCAGCTCCAAAGCTGGGCTTCTGTACTTGGAGACCATATAGACAAATTAAATTTAACACCTGAACACAGGTTACAAAGTAAAAAGCAACAAGTCCAAAAATGGCAGAGGTATACGGAGCCAGGAGACGAAATGGAAGCGTCAGCTTCTTCGCCTATGAAAAGATCATCTAGAAACTTGTCGGATGATCTTGAAAATGGCGATGATGACGACAGCCCCCTGCCGGAAGCAGTACTTACTACTAATTTAGGTCTAGATATAGTGGTCGTTGTTACCAAGACTGACTACATGAGCACTCTGGAGAAGGAGCACGATTACCGCGACGAGCACCTTGACTTCATGCAGCAGTGGATCCGCCGGTTCTGTCTGCAGTACGGAGCCGCCTTGTTCTACACCAGCGCCAAGGAGGACAAGAACTGTGATCTGCTGTATAAGTATCTGACGCACAGGATATACGGTCTACCGTTCAGGACGCCGGCGCTAATTGTAGAGAAAGACGCGGTTTTGATACCAGCCGGCTGGGACAGTATGAAGAAGATTAGCATACTATATGAGAACATGCAGTCATGTAAACCTGACGATTACTATAGGGATATTATTGTTCAGCCCGCTACACGCAAAAGCGGGGGCAGTCGCGAGGCGGAGGTTCAGGCGGAGGACGAGCAGACGTTCCTGCAGCGGCAGGTGGCGGCGCTGCACGCGCTGGGCGCCGCCCCCCCGCGCGCAGACTCCCCGCTGCGCGCCTCGCCCCGCCCGCACCAGTCAGAGATCGCGAGGATCGGCGTGAGTCCGGGCACGCCGGGCAACGAGGGCGTGCTGGCGAACTTCTTCAACTCGCTGCTGTACAAGAAGACGGGCGGCGGGGGCGGCGGCGCGCGGGTGGACGGCGCGGGGGGGGCGGCCGCCGCGCGCTCCGACGCCGCCGCCGAGCTCGACCGCCTCACGCGCACCAAGCGGAGCCCGCTCGACCTCAACTCGTCCGACTGCTAG

Protein

MDTNGQANGLKSKKKENGDGKDNLWSAILEEVQNQGNTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSALEYAYIDVRDEYRDDHTRLSVWVLDGDPGHTNLLKFALSEETFPHTLVILTVAMTTPWGILDQLQSWASVLGDHIDKLNLTPEHRLQSKKQQVQKWQRYTEPGDEMEASASSPMKRSSRNLSDDLENGDDDDSPLPEAVLTTNLGLDIVVVVTKTDYMSTLEKEHDYRDEHLDFMQQWIRRFCLQYGAALFYTSAKEDKNCDLLYKYLTHRIYGLPFRTPALIVEKDAVLIPAGWDSMKKISILYENMQSCKPDDYYRDIIVQPATRKSGGSREAEVQAEDEQTFLQRQVAALHALGAAPPRADSPLRASPRPHQSEIARIGVSPGTPGNEGVLANFFNSLLYKKTGGGGGGARVDGAGGAAAARSDAAAELDRLTRTKRSPLDLNSSDC

Uniprot

A0A194R5X6   A0A194PYX3   A0A212ELH9   A0A195BHI9   A0A195F4H0   A0A158NJZ5   + More
F4WIJ5   A0A026WF57   A0A195DZB1   E9JCD1   A0A0J7L5G6   E2C6N6   A0A151XE67   E2A100   A0A1W4W5J5   A0A2J7RBA6   D6WMX7   A0A212F1M3   A0A154PPU2   A0A3L8DP12   A0A067QP10   A0A2A3E9N2   A0A088A8B6   A0A0N0BGS3   A0A1B0C851   A0A1Y1KNP7   A0A1L8E5A5   A0A0C9R7Z7   A0A336M2P4   A0A336KG51   A0A182K743   K7IRI4   A0A182UPG6   Q7QEC0   A0A182I9R1   A0A0L0C853   W8BVG6   V5GYU1   A0A182R3G4   A0A182MIH5   A0A034VTK6   A0A0A1XRA1   U5ET37   A0A182Y7J8   A0A182PPC7   A0A182Q473   T1DE60   U4U4A8   Q16RB5   A0A232EYU9   A0A0K8U9J5   A0A182W4B3   J3JTC6   A0A182MZP3   A0A1J1HP29   A0A1Q3F4A2   A0A1Q3F452   A0A1Q3F460   A0A1Q3EU60   A0A084VVR5   A0A1B6CNW6   W8B7V1   A0A1I8QAG0   A0A182J0Q9   A0A182UEL6   A0A023EUB2   T1PDU8   A0A182KY12   A0A182X575   B3MVY2   B4JJL4   B0WSX6   A0A0C9R4M3   Q9VZ20   A0A182H422   A0A3B0JWX1   A0A0R3P537   B4GXK5   B3NV95   A0A1W4V195   B4PYE4   A0A0K8TNC2   B4M2N2   A0A1B6HG70   A0A1B6F978   A0A224XG43   A0A1B6FUE1   A0A1A9WVD1   A0A0P4VTP7   B4L4H5   Q29HJ5   B4N2K3   A0A1B6ISY7   A0A069DUL0   A0A182S7P0   A0A0V0G5K0   A0A1W4UNU4   A0A1A9YP15   A0A1B0AXR0   A0A0Q9WKF4  

Pubmed

26354079    22118469    21347285    21719571    24508170    21282665    + More
20798317    18362917    19820115    30249741    24845553    28004739    20075255    12364791    14747013    17210077    26108605    24495485    25348373    25830018    25244985    24330624    23537049    17510324    28648823    22516182    24438588    24945155    25315136    20966253    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26483478    15632085    17550304    26369729    27129103    23185243    26334808    18057021   

EMBL

KQ460644    KPJ13223.1    KQ459584    KPI98532.1    AGBW02014067    OWR42327.1    + More
KQ976465    KYM84270.1    KQ981820    KYN35281.1    ADTU01018485    ADTU01018486    ADTU01018487    GL888176    EGI65931.1    KK107276    EZA53634.1    KQ980031    KYN18161.1    GL771786    EFZ09519.1    LBMM01000500    KMQ98202.1    GL453161    EFN76348.1    KQ982254    KYQ58653.1    GL435626    EFN73053.1    NEVH01005920    PNF38108.1    KQ971343    EFA03267.1    AGBW02010853    OWR47632.1    KQ435022    KZC13915.1    QOIP01000006    RLU22026.1    KK853103    KDR11321.1    KZ288325    PBC27992.1    KQ435768    KOX75211.1    AJWK01000171    GEZM01078075    JAV63023.1    GFDF01000154    JAV13930.1    GBYB01002896    JAG72663.1    UFQT01000452    SSX24526.1    UFQS01000382    UFQT01000382    SSX03429.1    SSX23794.1    AAAB01008847    EAA06916.5    APCN01001027    JRES01000755    KNC28618.1    GAMC01013436    JAB93119.1    GALX01001424    JAB67042.1    AXCM01004867    GAKP01014069    JAC44883.1    GBXI01000951    GBXI01000741    JAD13341.1    JAD13551.1    GANO01002107    JAB57764.1    AXCN02001328    AXCN02001329    GALA01001177    JAA93675.1    KB632003    ERL87872.1    CH477719    EAT36932.1    NNAY01001561    OXU23594.1    GDHF01028977    JAI23337.1    APGK01044227    BT126482    KB741021    AEE61446.1    ENN75095.1    CVRI01000014    CRK89799.1    GFDL01012664    JAV22381.1    GFDL01012699    JAV22346.1    GFDL01012693    JAV22352.1    GFDL01016202    JAV18843.1    ATLV01017215    ATLV01017216    KE525157    KFB42059.1    GEDC01022180    JAS15118.1    GAMC01013437    JAB93118.1    GAPW01001092    JAC12506.1    KA646315    AFP60944.1    CH902625    EDV35127.2    CH916370    EDV99766.1    DS232077    EDS34104.1    GBYB01002895    JAG72662.1    AE014298    AY058302    AAF48011.2    AAL13531.1    AAN09289.1    JXUM01108602    KQ565246    KXJ71186.1    OUUW01000011    SPP86575.1    CH379064    KRT06512.1    CH479196    EDW27482.1    CH954180    EDV46083.1    CM000162    EDX02006.1    GDAI01001729    JAI15874.1    CH940651    EDW65936.1    GECU01033972    GECU01003756    JAS73734.1    JAT03951.1    GECZ01022972    JAS46797.1    GFTR01006422    JAW10004.1    GECZ01016166    JAS53603.1    GDKW01000589    JAI56006.1    CH933810    EDW07453.1    EAL31763.2    KRT06513.1    CH963925    EDW78592.1    GECU01017660    JAS90046.1    GBGD01001393    JAC87496.1    GECL01002780    JAP03344.1    JXJN01005350    KRF82487.1    KRF82488.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000078540    UP000078541    UP000005205    + More
UP000007755    UP000053097    UP000078492    UP000036403    UP000008237    UP000075809    UP000000311    UP000192223    UP000235965    UP000007266    UP000076502    UP000279307    UP000027135    UP000242457    UP000005203    UP000053105    UP000092461    UP000075881    UP000002358    UP000075903    UP000007062    UP000075840    UP000037069    UP000075900    UP000075883    UP000076408    UP000075885    UP000075886    UP000030742    UP000008820    UP000215335    UP000075920    UP000019118    UP000075884    UP000183832    UP000030765    UP000095300    UP000075880    UP000075902    UP000095301    UP000075882    UP000076407    UP000007801    UP000001070    UP000002320    UP000000803    UP000069940    UP000249989    UP000268350    UP000001819    UP000008744    UP000008711    UP000192221    UP000002282    UP000008792    UP000091820    UP000009192    UP000007798    UP000075901    UP000092443    UP000092460   

PRIDE

Q9VZ20   

Pfam

PF05783   DLIC        + More
PF00828   Ribosomal_L27A

Interpro

IPR008467   Dynein1_light_intermed_chain        + More
IPR022780   Dynein_light_int_chain       
IPR027417   P-loop_NTPase       
IPR021131   Ribosomal_L18e/L15P       
IPR030878   Ribosomal_L15       
IPR036227   L18e/L15P_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF52080   SSF52080       

ProteinModelPortal

A0A194R5X6   A0A194PYX3   A0A212ELH9   A0A195BHI9   A0A195F4H0   A0A158NJZ5   + More
F4WIJ5   A0A026WF57   A0A195DZB1   E9JCD1   A0A0J7L5G6   E2C6N6   A0A151XE67   E2A100   A0A1W4W5J5   A0A2J7RBA6   D6WMX7   A0A212F1M3   A0A154PPU2   A0A3L8DP12   A0A067QP10   A0A2A3E9N2   A0A088A8B6   A0A0N0BGS3   A0A1B0C851   A0A1Y1KNP7   A0A1L8E5A5   A0A0C9R7Z7   A0A336M2P4   A0A336KG51   A0A182K743   K7IRI4   A0A182UPG6   Q7QEC0   A0A182I9R1   A0A0L0C853   W8BVG6   V5GYU1   A0A182R3G4   A0A182MIH5   A0A034VTK6   A0A0A1XRA1   U5ET37   A0A182Y7J8   A0A182PPC7   A0A182Q473   T1DE60   U4U4A8   Q16RB5   A0A232EYU9   A0A0K8U9J5   A0A182W4B3   J3JTC6   A0A182MZP3   A0A1J1HP29   A0A1Q3F4A2   A0A1Q3F452   A0A1Q3F460   A0A1Q3EU60   A0A084VVR5   A0A1B6CNW6   W8B7V1   A0A1I8QAG0   A0A182J0Q9   A0A182UEL6   A0A023EUB2   T1PDU8   A0A182KY12   A0A182X575   B3MVY2   B4JJL4   B0WSX6   A0A0C9R4M3   Q9VZ20   A0A182H422   A0A3B0JWX1   A0A0R3P537   B4GXK5   B3NV95   A0A1W4V195   B4PYE4   A0A0K8TNC2   B4M2N2   A0A1B6HG70   A0A1B6F978   A0A224XG43   A0A1B6FUE1   A0A1A9WVD1   A0A0P4VTP7   B4L4H5   Q29HJ5   B4N2K3   A0A1B6ISY7   A0A069DUL0   A0A182S7P0   A0A0V0G5K0   A0A1W4UNU4   A0A1A9YP15   A0A1B0AXR0   A0A0Q9WKF4  

PDB

6F3A     E-value=6.93252e-108,     Score=999

KEGG

101737161    K10416 dynein light intermediate chain 1, cytosolic | (RefSeq) cytoplasmic dynein 1 light intermedia

PATHWAY

04145    Phagosome - Bombyx mori (domestic silkworm)

GO

GO:0003777   GO:0007018   GO:0005868   GO:0006412   GO:0003735   GO:0015934   GO:0045504   GO:0000226   GO:0008088   GO:0048477   GO:0005813   GO:0007409   GO:0048814   GO:0043005   GO:0005635   GO:0048813   GO:0051028   GO:0005737   GO:0035149   GO:0000278   GO:0030286  

PANTHER

PTHR12688  

Length:

464

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0564300000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00615

outside

1  -  464

 

 

Pi

228.603084

Theta

177.452441

Tajima's D

0.370305

CLR

1.174931

CSRT

0.47797610119494

Interpretation

Uncertain