Gene

KWMTBOMO01704

Pre Gene Modal

BGIBMGA014468

Annotation

non-LTR_retrotransposon_CATS_[Danaus_plexippus]

Location

Bomo_Chr4(-):2028860-2030334      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.43

CDS

ATGTACGAGCCCGATCAAGTCATCATCATTATCCTGCCCTTCTCCCAGTCACCTGGGGTCGGTGCAACATGTTTTCTCCTTCCATACTCTTCTATCAAATACCATTTCTTCGCTCACTCCCCTCCTACCCATATCGCCTGGGGTGCTCATCCCGAGAACGTGCGCACCATCTATCTCCGAGTCATCGAGCCAATCGTCACCTACGCTGCCGGGGTGTGGGGACACATAGTAAACAAGCGCTACATCAAAAAATCTTTGATGAGCATGCAGCGTGGTTTTGCCCTAAAAGCCATCAGAGGATTCCGCACTATTTCAACCTCCGCTGCTCTGGCTCTCGCACAATTCACCCCTCTAGACCTAAAAATCCGAGAAGTACACCAAATCGAAAAAGTCAGGCTCACTGGGAAAACTGAATTCCTCCCCAATGACATTTCTTATGAGAAACCTGTCCCCGTCAAGGACCTCCTACATCCCGCTAGAAGGCCGACAATCAAACCCATACCCTCCTCTGAACACCGAATTAACTCCGAAATGACGGACAGTACTCTGGTCACTCGCGTATTCACTGACGGAAGTAAGCAGGACGATGGATCAGTTGGAGCCGCATTCGTGCTTTACAGACCCGGCGACACTGAAACATCCGTAACAAAAAAGTACAAATTACACAGTAGCTGCACAGTCTTCCAGGCAGAGCTGTACGCCATCTGGAAAGCCTGTCAGTGGATTGTAAGCGAAAATCATCCCCACACATACATCTTCACCGATTCTCTCTCATCAATATACGCGATAAATAACAGAAGCAACACACACCCCATCATAGTGAACATACACAAACTCATACACGCTAACCACACTACACACAAAATTTTCATAGACTGGGTAAAGGGACACTCGGGTGTCATAGGAAACGAGGAAGCCGATGCGGCTGCCAACAGCGGCGCACGCATGCACAAGGCCCCCGACTACTCGCAGTTCTCAATATCCTACGTGAAACACAAGATTCACACAGAACACCACGCCATCTGGCAAGCCAGATACGAAAGCTCCCCGCAGGGCTCACACACAAAAACACTACTACCAAAACTGAACGACATCAAAGAACTCAACAAATGCACACAAACAAACTTTCAGCTTACACAAATACTCACAGGCCATGGATATCACAAGACATACTTACATCGCTTCAAAATAGCACCAGATGACACCTGCCCCTGCGACGGCACTTCCAGCCAAACTGTAGAACACCTCCTTAAAAACTGCCAAGTGTTCGCTGCGAAAAGGCACAGCCACGAAGAAACGTGCCACGAAGTACAGGTGTCACCATATAATTTACCTGAAATGTTAAAAAAGAAAGCTGCAATCAACTCTTTCACTTCGTTTTGCCAAACAATAATCAACAACATCAAGAAAATAAATGAAAACAATTAG

Protein

MYEPDQVIIIILPFSQSPGVGATCFLLPYSSIKYHFFAHSPPTHIAWGAHPENVRTIYLRVIEPIVTYAAGVWGHIVNKRYIKKSLMSMQRGFALKAIRGFRTISTSAALALAQFTPLDLKIREVHQIEKVRLTGKTEFLPNDISYEKPVPVKDLLHPARRPTIKPIPSSEHRINSEMTDSTLVTRVFTDGSKQDDGSVGAAFVLYRPGDTETSVTKKYKLHSSCTVFQAELYAIWKACQWIVSENHPHTYIFTDSLSSIYAINNRSNTHPIIVNIHKLIHANHTTHKIFIDWVKGHSGVIGNEEADAAANSGARMHKAPDYSQFSISYVKHKIHTEHHAIWQARYESSPQGSHTKTLLPKLNDIKELNKCTQTNFQLTQILTGHGYHKTYLHRFKIAPDDTCPCDGTSSQTVEHLLKNCQVFAAKRHSHEETCHEVQVSPYNLPEMLKKKAAINSFTSFCQTIINNIKKINENN

Uniprot

Q9BLI5   Q3V5Y4   A0A2A4JF48   Q93139   A0A2W1BN41   A0A1W7R9Y4   + More
A0A087TAD8   A0A2L2YM05   A0A224X5M4   A0A087USZ4   A0A0K1IK14   A0A147BK23   A0A1W4XBW8   A0A0K1IK29   A0A087UHT1   A0A087TI44   A0A087TJZ1   O44317   A0A131XRY9   A0A142LX31   A0A023EX80   A0A1B6G0A1   A0A0K8TSF0   A0A087TUG6   A0A2E0U2U9   U5EVA2   O44315   L7MBK1   O46185   A0A224X6B3   A0A1B6FQR0   A0A224XPM5   A0A131XWC0   U5EW32   U5EV73   A0A2P2I011   A0A1E7YVD4   A0A1V6WQ47   V9H1I9   A0A2R5L945   A0A224X5X2   A0A023EWA3   A0A142LX39   A0A0K8TR39   X8J4L8   A0A0A2KN74   U5EG91   U5ERW4   A0A2P2I3J0   A0A2P2HZJ0   O18558   A0A0K8TRR6  

Pubmed

11319268    7623845    15247245    28756777    26561354    29652888    + More
25527032    25474469    26369729    29337314    25576852    9364772    28368369    1665124    24945155    25359908    25338147   

EMBL

AB046668    BAB21511.1    AB211537    BAE44464.1    NWSH01001820    PCG70022.1    + More
D38414    BAA07467.1    KZ149985    PZC75691.1    GFAH01000444    JAV47945.1    KK114278    KFM62077.1    IAAA01038678    LAA08500.1    GFTR01008639    JAW07787.1    KK121445    KFM80483.1    KP771712    AKU04650.1    GEGO01004274    JAR91130.1    KP771711    AKU04648.1    KK119855    KFM76920.1    KK115320    KFM64783.1    KK115566    KFM65430.1    AF015813    AAB94039.1    GEFM01006389    JAP69407.1    KU543676    AMS38357.1    GBBI01004920    JAC13792.1    GECZ01013919    JAS55850.1    GDAI01000743    JAI16860.1    KK116791    KFM68755.1    PABS01000003    MAT33547.1    GANO01003496    JAB56375.1    AF015489    AAB94030.1    GACK01003634    JAA61400.1    U73803    AAB92394.1    GFTR01008411    JAW08015.1    GECZ01017290    JAS52479.1    GFTR01006477    JAW09949.1    GEFM01005915    JAP69881.1    GANO01003141    JAB56730.1    GANO01003537    JAB56334.1    IACF01001650    LAB67339.1    MAYS01000558    OFC59623.1    MOOB01000219    OQE64972.1    X59239    CAA41925.1    GGLE01001887    MBY06013.1    GFTR01008541    JAW07885.1    GAPW01000103    JAC13495.1    KU543680    AMS38365.1    GDAI01000756    JAI16847.1    JATN01000322    EUC56479.1    JQGA01001155    KGO69287.1    GANO01003539    JAB56332.1    GANO01003538    JAB56333.1    IACF01002963    LAB68595.1    IACF01001499    LAB67197.1    U87543    AAB65093.1    GDAI01000752    JAI16851.1   

Proteomes

UP000218220    UP000054359    UP000192223    UP000191691    UP000030108    UP000030104    + More

PRIDE

Q9BLI5    Q3V5Y4    Q93139   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00075   RNase_H
PF00078   RVT_1

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR012337   RNaseH-like_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       

Gene 3D

3.30.420.10     3.60.10.10    

ProteinModelPortal

Q9BLI5   Q3V5Y4   A0A2A4JF48   Q93139   A0A2W1BN41   A0A1W7R9Y4   + More
A0A087TAD8   A0A2L2YM05   A0A224X5M4   A0A087USZ4   A0A0K1IK14   A0A147BK23   A0A1W4XBW8   A0A0K1IK29   A0A087UHT1   A0A087TI44   A0A087TJZ1   O44317   A0A131XRY9   A0A142LX31   A0A023EX80   A0A1B6G0A1   A0A0K8TSF0   A0A087TUG6   A0A2E0U2U9   U5EVA2   O44315   L7MBK1   O46185   A0A224X6B3   A0A1B6FQR0   A0A224XPM5   A0A131XWC0   U5EW32   U5EV73   A0A2P2I011   A0A1E7YVD4   A0A1V6WQ47   V9H1I9   A0A2R5L945   A0A224X5X2   A0A023EWA3   A0A142LX39   A0A0K8TR39   X8J4L8   A0A0A2KN74   U5EG91   U5ERW4   A0A2P2I3J0   A0A2P2HZJ0   O18558   A0A0K8TRR6  

PDB

2QKK     E-value=5.27567e-05,     Score=112

KEGG

101739415    no KO assigned | (RefSeq) uncharacterized LOC101739415

GO

GO:0004523   GO:0003676   GO:0003964   GO:0016021   GO:0006357   GO:0016592   GO:0006508   GO:0006811   GO:0016020   GO:0005515   GO:0003779  

Length:

475

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

51.5254300000001

Exp number, first 60 AAs:

25.04222

Total prob of N-in:

0.94169

POSSIBLE N-term signal

sequence

inside

1  -  6

TMhelix

7  -  29

outside

30  -  475

 

 

Pi

274.129387

Theta

168.677319

Tajima's D

1.954909

CLR

0.013218

CSRT

0.874556272186391

Interpretation

Uncertain