Gene

KWMTBOMO01702

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr4(+):1888399-1888969      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.814

CDS

ATGTATGGTTGCGAAACGTGGACCCTGAAAGAGGACACTACAAGACGCCTACAGGCATTCGAGATGTGGTGCTACCGTCCCATGTTACGCATCAGTTGGACGCAGAGGGTCAGGAACGAAACCGTGCTTCAGCGCGTTCATATGTCCCGGAAAATGCTGCCTGCTATCAAAAAGTGCAAGATAGAGTATCTCGGCCATGTGCTCAGGAACGATCGATACGTGCTGCTGCAGCTGATAATTATGGGCAAAGTGGACGGAAAGAGACGTGCTGGGCGAAGAAAAAAGTCATGGCTCCGGAATATCCGGGAGTGGACCGGTATTGCCTCCGTCGAACAGCTGTTCCGGCTGGCTGCTGACAGAAAGGAATACAGGAAGCTAACGGCCAACCTTCAGGATTGA

Protein

MYGCETWTLKEDTTRRLQAFEMWCYRPMLRISWTQRVRNETVLQRVHMSRKMLPAIKKCKIEYLGHVLRNDRYVLLQLIIMGKVDGKRRAGRRKKSWLRNIREWTGIASVEQLFRLAADRKEYRKLTANLQD

Uniprot

D5LB38   A0A2A4J795   A0A151IIH7   A0A146L0Z1   A0A0A9VZT6   A0A0K8T3U8   + More
A0A0A9XCF5   A0A0J7KRQ5   A0A0A9XXL9   A0A2A4JBK9   A0A0J7KZE8   J9LIJ7   A0A2H1V1U0   A0A2S2NMQ2   A0A2W1BSS7   A0A2S2QAF2   A0A2S2P9Y7   A0A2A4JXP9   A0A2S2QJK3   X1D4L4   H2YWZ6   A0A2S2PZ46   W4Y921   H2YWZ5   A0A0B7BT11   H3B2Y3   A0A2S2PJ80   A0A0B7BVF2   A0A0B7BSZ9   A0A2S2PJ33   A0A0B7BT80   A0A0B7BUR9   A0A2S2PMS6   W5NMM5   A0A0A9WMP5   A0A2S2NX31   W5NIE2   A0A067R1I3   A0A2J7RM57   A0A067QXS5   A0A0B7BVD9   A0A0B7BVD3   A0A0B7BSB6   A0A067QUH9   A0A2S2QE77   W5MYT3   A0A2J7PN37   A0A2J7QSD2   A0A067RQM5   A0A067R8J7   A0A2J7QV96   A0A076N3Z4   A0A2J7QX30   A0A2J7RG81   A0A0K8S9L8   A0A2J7RTL3   A0A076N1B6   A0A2J7PGF8   A0A2J7R045   A0A2J7PNF2   A0A2J7QN33   A0A2J7Q6A8   W5NLK6   A0A2J7Q676   A0A2J7PZP5   A0A2J7PVX9   A0A2J7RNL1   A0A2J7QVI2   A0A2J7Q7P8   A0A2G8L4W3   A0A0A9WVQ5   A0A146LUY8  

Pubmed

20470440    26823975    25401762    28756777    24624126    9215903    + More
24845553    29023486   

EMBL

GU815089    ADF18552.1    NWSH01002736    PCG67606.1    KQ977522    KYN02133.1    + More
GDHC01017214    JAQ01415.1    GBHO01041897    JAG01707.1    GBRD01005612    JAG60209.1    GBHO01028834    JAG14770.1    LBMM01003995    KMQ92919.1    GBHO01020011    GDHC01013600    JAG23593.1    JAQ05029.1    NWSH01001998    PCG69477.1    LBMM01001656    KMQ95932.1    ABLF02012409    ABLF02012412    ODYU01000306    SOQ34818.1    GGMR01005851    MBY18470.1    KZ149985    PZC75696.1    GGMS01004979    MBY74182.1    GGMR01013640    MBY26259.1    NWSH01000469    PCG76200.1    GGMS01008711    MBY77914.1    BART01031562    GAH15691.1    GGMS01001437    MBY70640.1    AAGJ04161766    HACG01049494    HACG01049495    CEK96359.1    CEK96360.1    AFYH01119920    GGMR01016881    MBY29500.1    HACG01049490    HACG01049491    CEK96355.1    CEK96356.1    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    GGMR01016842    MBY29461.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    GGMR01018096    MBY30715.1    AHAT01022938    GBHO01034555    JAG09049.1    GGMR01009131    MBY21750.1    AHAT01009145    KK852779    KDR16678.1    NEVH01002574    PNF41923.1    KK853131    KDR10935.1    HACG01049255    CEK96120.1    HACG01049245    CEK96110.1    HACG01049249    CEK96114.1    KK852941    KDR13536.1    GGMS01006790    MBY75993.1    AHAT01017643    NEVH01023958    PNF17737.1    NEVH01011876    PNF31501.1    KK852482    KDR22935.1    KK852811    KDR15914.1    NEVH01010478    PNF32508.1    KF881086    AIJ27485.1    NEVH01009398    PNF33135.1    NEVH01004403    PNF39833.1    GBRD01015972    GBRD01015971    GBRD01015970    JAG49854.1    NEVH01000001    PNF44158.1    KF881087    AIJ27486.1    NEVH01025635    PNF15414.1    NEVH01008300    PNF34184.1    NEVH01023953    PNF17874.1    NEVH01013201    PNF29989.1    NEVH01017534    PNF24114.1    AHAT01012943    NEVH01017535    PNF24084.1    NEVH01020333    PNF21801.1    NEVH01020940    PNF20497.1    NEVH01002157    PNF42414.1    NEVH01009907    PNF32598.1    NEVH01017441    PNF24607.1    MRZV01000221    PIK55282.1    GBHO01033031    GBHO01015473    GBHO01015472    GBHO01015471    GBHO01015469    GBHO01013134    GBHO01013133    GBHO01013129    GBHO01013128    JAG10573.1    JAG28131.1    JAG28132.1    JAG28133.1    JAG28135.1    JAG30470.1    JAG30471.1    JAG30475.1    JAG30476.1    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1   

Proteomes

UP000218220    UP000078542    UP000036403    UP000007819    UP000007875    UP000007110    + More
UP000008672    UP000018468    UP000027135    UP000235965    UP000230750   

PRIDE

D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR000637   HMGI/Y_DNA-bd_CS       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D5LB38   A0A2A4J795   A0A151IIH7   A0A146L0Z1   A0A0A9VZT6   A0A0K8T3U8   + More
A0A0A9XCF5   A0A0J7KRQ5   A0A0A9XXL9   A0A2A4JBK9   A0A0J7KZE8   J9LIJ7   A0A2H1V1U0   A0A2S2NMQ2   A0A2W1BSS7   A0A2S2QAF2   A0A2S2P9Y7   A0A2A4JXP9   A0A2S2QJK3   X1D4L4   H2YWZ6   A0A2S2PZ46   W4Y921   H2YWZ5   A0A0B7BT11   H3B2Y3   A0A2S2PJ80   A0A0B7BVF2   A0A0B7BSZ9   A0A2S2PJ33   A0A0B7BT80   A0A0B7BUR9   A0A2S2PMS6   W5NMM5   A0A0A9WMP5   A0A2S2NX31   W5NIE2   A0A067R1I3   A0A2J7RM57   A0A067QXS5   A0A0B7BVD9   A0A0B7BVD3   A0A0B7BSB6   A0A067QUH9   A0A2S2QE77   W5MYT3   A0A2J7PN37   A0A2J7QSD2   A0A067RQM5   A0A067R8J7   A0A2J7QV96   A0A076N3Z4   A0A2J7QX30   A0A2J7RG81   A0A0K8S9L8   A0A2J7RTL3   A0A076N1B6   A0A2J7PGF8   A0A2J7R045   A0A2J7PNF2   A0A2J7QN33   A0A2J7Q6A8   W5NLK6   A0A2J7Q676   A0A2J7PZP5   A0A2J7PVX9   A0A2J7RNL1   A0A2J7QVI2   A0A2J7Q7P8   A0A2G8L4W3   A0A0A9WVQ5   A0A146LUY8  

KEGG

101739063    no KO assigned | (RefSeq) uncharacterized LOC101739063

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006355  

Length:

132

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01199

Exp number, first 60 AAs:

0.00021

Total prob of N-in:

0.31045

outside

1  -  132

 

 

Pi

171.84941

Theta

161.934438

Tajima's D

0.25383

CLR

0

CSRT

0.44202789860507

Interpretation

Uncertain