SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01700
Pre Gene Modal
BGIBMGA006118
Annotation
PREDICTED:_probable_RNA_polymerase_II_nuclear_localization_protein_SLC7A6OS_isoform_X2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.924
 

Sequence

CDS
ATGTCTTCACAAACTGTTATTAGAGTGAAGCGTAGATTAGAAGATAACCCTCACGATGCTCTGGTTGTTACATGTAAACGGCCGAAGACCGACCCTGAATCATGCCAATCCTTGTTTGTATTTCGAGCCACTATCACCAATCAGGAAACAGCTGATATCAAAGATTTGGTGTCTCCAGCCGATTTCAAACTGCAACCGAGACATAATGTCAAGGATATTGTTGAAAAGCTACGAAAAGACCAGAAGGCTTCTTCAAGCAAAAGTCGTTATGAAATAGTCAACTGTAACCGAAGCATAGAAAAAGATACGGATAATTTCAATCTTGTAGACTTAAAAAAGACTGATGATGTTGATGATGGAATTGAATATGCCTATGACTTATATACAATACCAAAACAAGACTTTGATTTGTCTGTGATTGACAGCTTTGCCAGCATAGAAACAGACCTAATACCTGGTACACATGATGATGGTTGCGACACAACATCTGGTGACGAAGTTGATGACGATGATGATTCTAATGACGAAAACAACTGGAGAAACGATTATCCTGATTCTGAAAAAAGTAGCATTGATGAAGATGACATAGTTCGGGCTATGGAGCGTGTTGATTTAGAAGACAACCTATCAAGCGATGATGGTGAAGACAAAATTTATGACACTAATGATTATGAAGAAAATGTAAGATTATATGGTACAGGATATGCCAAATATAAAGCTAAGATTCTTGCTGAAAATCCCGACCTTTCCAATCGGAGCCTTATCCACTCCGTCAAAATGAAAGACATTGATGAAGAATCAGTCGAAGGATATAAGGATGATAGCGATGACGGTTTTTACTATGGCCAGGAAGATGACTCGCCGCATCACAGAAAACAATATAAAGATTCGTCTGATGAATATAGCCCAGATTGA
Protein
MSSQTVIRVKRRLEDNPHDALVVTCKRPKTDPESCQSLFVFRATITNQETADIKDLVSPADFKLQPRHNVKDIVEKLRKDQKASSSKSRYEIVNCNRSIEKDTDNFNLVDLKKTDDVDDGIEYAYDLYTIPKQDFDLSVIDSFASIETDLIPGTHDDGCDTTSGDEVDDDDDSNDENNWRNDYPDSEKSSIDEDDIVRAMERVDLEDNLSSDDGEDKIYDTNDYEENVRLYGTGYAKYKAKILAENPDLSNRSLIHSVKMKDIDEESVEGYKDDSDDGFYYGQEDDSPHHRKQYKDSSDEYSPD

Summary

Pfam
PF08574   Iwr1
Interpro
IPR040218   SLC7A6OS        + More
IPR013883   TF_Iwr1_dom       

Ontologies

Topology

Length:
304
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.07963
outside
1  -  304
 
 

Population Genetic Test Statistics

Pi
247.278778
Theta
133.933491
Tajima's D
0.07274
CLR
0.241547
CSRT
0.389280535973201
Interpretation
Uncertain
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