Gene

KWMTBOMO01689

Annotation

PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_[Amyelois_transitella]

Location

Bomo_Chr4(-):1651337-1653998      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.456

CDS

ATGTCCGAGCTAGATATAAACTCTGAGAACTTATTTTCACCTCAGGTTAATTTACGTGAAATCGATTTAGATAATGCATACGATTTAGAGGCGAGCGGAGATGAGATTATCCATCCCCCAAAAAAACGAAAGCGTCTTTATATAAGAAGGGATTCAGAAACTAAATGTGATTTGGTGGAAAATGTTGTCACTGCAAATGTAGCTCATGTGTCTTCAAGTAGGCTACAAAAATGGAGAGAACCAACGGAACACCAACTATCGCAGATTGCATTCACGGAGCCAACGGGTATCAAGAAACCGTATGACGAAGAACTACGAAATGCAGATCCAGGGGCCTATTTCTCATTAATAGTCTCAGACGACATTTTTGAGGAAATCGCAGTGCAAACCAACTTGTATGCTGAGCGACGCGAGAGCACAATGCCTTCCTCGCGTTTGAATAGTTGGAAGCCAACAAACAAAAATGAAGTCAAGAGTCTTTTTGGACTTATTATGTACATGGGACTAGTCAAACTCCCAAAAATAAGTCTATACTGGAGCACAGACAGGGTTTTCAAACAAACTTTTGCGCCTTCGATTATGAGTCGAAATAGATTCGAACTGTTGTTGCAGAATCTGCATTTCGTTGAAAACGAAATAGCTGATGCCGCCGATAGAATCTATAAAATACGCAGTCTGATAGATAAGTTAAACAAATCATTTCAACGGTGCTATTCGCCCAAAGAAGAAGTTTGTGTCGACGAAAGTCAAGTCCCTTACAGCGGGCGATTGATCTTAAGGCAGGGCAATAAAAGAAAAAAGCATAAATGTGGAATGAAACTGGTCAAACTGTGCACAATACCAGGTTATACCTATAAATTAGAACTTTACGCTGGTAAAAACCACGAACCACTCAATACAACGCCTAAAAATGTTGTAATGTCAATCTGTAAAGAAATACTTGATTTGGGGCACACCGTAGCTACGAATAATTCGTACACAAGTTTGGATTTAGCCCACGAACTTCTAGACAGGAATACTCATTTATTAGGCACACTGAGAAAAAATAGTAAGGGCCTCCCGAAACAAGTAATTGATGCCAAACTTAAACAAGGCGAATCTGTGGAAATGGAAAACGAAAGAGGCATAACAGTGTTACACTGGAAAGATGAACGAAGTGTGTTAATGCTCTCCACAAAACACACTAAAGAATTTCCTAGTGTGCCCATAAAAGGAAAAATGGTTCGAACACCGAAATTGATTATAGCGTATAATAAAGCAAAAGGAGCTATTCACACGAGCGATCAAATGAACGCATACTCATCACCATTGAGAAAAACTCTAAAATGGTATAAAAAGTTAGGCATCGAATTAATTTTAAACACGGCCGTAGTCAACGCCTGGATCATGTTTTGCGAAAATACGGCTCAGCAAGGAATTGTAGAATTCCGACGTCAATTAGTGGAATATCTAGAATAA

Protein

MSELDINSENLFSPQVNLREIDLDNAYDLEASGDEIIHPPKKRKRLYIRRDSETKCDLVENVVTANVAHVSSSRLQKWREPTEHQLSQIAFTEPTGIKKPYDEELRNADPGAYFSLIVSDDIFEEIAVQTNLYAERRESTMPSSRLNSWKPTNKNEVKSLFGLIMYMGLVKLPKISLYWSTDRVFKQTFAPSIMSRNRFELLLQNLHFVENEIADAADRIYKIRSLIDKLNKSFQRCYSPKEEVCVDESQVPYSGRLILRQGNKRKKHKCGMKLVKLCTIPGYTYKLELYAGKNHEPLNTTPKNVVMSICKEILDLGHTVATNNSYTSLDLAHELLDRNTHLLGTLRKNSKGLPKQVIDAKLKQGESVEMENERGITVLHWKDERSVLMLSTKHTKEFPSVPIKGKMVRTPKLIIAYNKAKGAIHTSDQMNAYSSPLRKTLKWYKKLGIELILNTAVVNAWIMFCENTAQQGIVEFRRQLVEYLE

Similarity

Belongs to the universal ribosomal protein uS3 family.

Uniprot

S4P945   A0A023EYQ2   A0A023F0B8   S4NY54   E2C9Y4   A0A084W7H9   + More
A0A2S2QDJ8   A0A2H8TZ84   J9K6D0   X1WU42   A0A016SIZ8   J9LWR0   S4PBM2   X1X046   J9JQ12   X1XRD4   J9K106   A0A0N4XY30   J9JVX5   J9LK68   A0A1B6HG03   A0A016V127   A0A016U6U0   J9LKV2   A0A0P4WIX9   A0A0N4WU61   A0A016VFC3   A0A016VFZ3   S4P9J6   A0A0N4YQB3   J9KXH3   X1XBY4   A0A1E1WBV4   A0A023EYN9   A0A1E1VXQ8   A0A0D6LHL4   J9JPM8   T0MM39   A0A016VEZ7   A0A0P4W9M6   W6NB59   T1I3L1   A0A0N4WS15   A0A1B6IUZ3   A0A183G8F5   A0A3P8A9H6   V5GG67   A0A1E1WHA1   A0A182W9Z3   A0A016T3Q5   A0A183F4M8   A0A3P7UFA4   A0A368GTV8   A0A2B4SRV7   A0A0D8XH70   A0A2S2QUS6   J9KLM1   J9LP86   A0A087TLT3   A0A1B6K2A9   A0A1A9ZX35   A0A1B6E873   A0A0N4WGU5   A0A1A9VCE3   A0A0N4UUN0   A0A2H1V5W0   W4ZHM1   A0A1A9XAR1   A8J4K9   H9IWM5   A0A1B6LW93   A0A1B6KKZ3   A0A1B6H7X0   A0A0A9W0B8   A0A1B6LFF4   H9J421   A0A183G7U2   A0A3P8A9A8   A0A1B6J0Q3   A8J4K3   A8J4K6   A0A0A9W581  

Pubmed

23622113    25474469    20798317    24438588    25730766    23829473    + More
26856411    17934208    19121390    25401762    26823975   

EMBL

GAIX01005691    JAA86869.1    GBBI01004440    JAC14272.1    GBBI01004438    JAC14274.1    + More
GAIX01013935    JAA78625.1    GL453910    EFN75248.1    ATLV01021248    KE525315    KFB46173.1    GGMS01006604    MBY75807.1    GFXV01007414    MBW19219.1    ABLF02025866    ABLF02025869    ABLF02025877    ABLF02018838    JARK01001552    EYB90668.1    ABLF02029982    GAIX01004551    JAA88009.1    ABLF02011864    ABLF02011866    ABLF02042566    ABLF02010187    ABLF02050407    ABLF02012265    ABLF02038619    UYSL01019948    VDL71548.1    ABLF02030622    ABLF02030627    ABLF02011361    GECU01034165    JAS73541.1    JARK01001356    EYC20951.1    JARK01001390    EYC10641.1    ABLF02029983    GDRN01069744    JAI63996.1    JARK01001346    EYC26339.1    EYC26340.1    GAIX01003729    JAA88831.1    UYSL01024178    VDL83170.1    ABLF02011601    ABLF02011602    ABLF02016107    GDQN01006584    JAT84470.1    GBBI01004439    JAC14273.1    GDQN01011536    GDQN01001322    JAT79518.1    JAT89732.1    KE125300    EPB69401.1    ABLF02017387    KE647018    EQB62075.1    EYC26204.1    GDRN01075668    JAI63019.1    CAVP010055412    CDL94120.1    ACPB03026393    UZAF01018515    VDO52364.1    GECU01016947    JAS90759.1    UZAH01030493    VDP10747.1    GALX01005527    JAB62939.1    GDQN01004768    JAT86286.1    JARK01001477    EYB97365.1    UZAH01001106    VDO19503.1    JOJR01000056    RCN47811.1    LSMT01000021    PFX32631.1    KN716593    KJH43099.1    GGMS01012057    MBY81260.1    ABLF02028028    ABLF02006169    ABLF02055685    KK115799    KFM66072.1    GECU01002110    JAT05597.1    GEDC01003168    JAS34130.1    UZAF01017203    VDO39079.1    UXUI01007140    VDD85673.1    ODYU01000651    SOQ35792.1    AAGJ04151167    AB300558    BAF82021.1    BABH01021160    BABH01021161    BABH01021162    BABH01021163    GEBQ01012026    JAT27951.1    GEBQ01027849    JAT12128.1    GECU01037003    GECU01013756    JAS70703.1    JAS93950.1    GBHO01042743    GDHC01013469    JAG00861.1    JAQ05160.1    GEBQ01017560    JAT22417.1    BABH01041064    UZAH01030316    VDP10112.1    GECU01014964    JAS92742.1    AB300556    BAF82019.1    AB300557    BAF82020.1    GBHO01041038    JAG02566.1   

Proteomes

UP000008237    UP000030765    UP000007819    UP000024635    UP000038043    UP000271162    + More
UP000038042    UP000025227    UP000015103    UP000268014    UP000050761    UP000075920    UP000252519    UP000225706    UP000053766    UP000054359    UP000092445    UP000078200    UP000038041    UP000274131    UP000007110    UP000092443    UP000005204   

PRIDE

H9IWM5    H9J421   

Pfam

PF13843   DDE_Tnp_1_7        + More
PF05699   Dimer_Tnp_hAT
PF02037   SAP
PF05380   Peptidase_A17
PF00188   CAP
PF00189   Ribosomal_S3_C
PF07650   KH_2
PF13842   Tnp_zf-ribbon_2
PF05225   HTH_psq

Interpro

IPR029526   PGBD        + More
IPR008906   HATC_C_dom       
IPR012337   RNaseH-like_sf       
IPR003034   SAP_dom       
IPR036361   SAP_dom_sf       
IPR008042   Retrotrans_Pao       
IPR014044   CAP_domain       
IPR035940   CAP_sf       
IPR005703   Ribosomal_S3_euk/arc       
IPR036419   Ribosomal_S3_C_sf       
IPR001351   Ribosomal_S3_C       
IPR004044   KH_dom_type_2       
IPR018280   Ribosomal_S3_CS       
IPR015946   KH_dom-like_a/b       
IPR009019   KH_sf_prok-type       
IPR032718   PGBD4_C_Znf-ribbon       
IPR000315   Znf_B-box       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF53098   SSF53098        + More
SSF68906   SSF68906       
SSF55797   SSF55797       
SSF54821   SSF54821       
SSF54814   SSF54814       
SSF46689   SSF46689       
SSF57667   SSF57667       

Gene 3D

1.10.720.30     3.40.33.10     3.30.1140.32     3.30.300.20    

ProteinModelPortal

S4P945   A0A023EYQ2   A0A023F0B8   S4NY54   E2C9Y4   A0A084W7H9   + More
A0A2S2QDJ8   A0A2H8TZ84   J9K6D0   X1WU42   A0A016SIZ8   J9LWR0   S4PBM2   X1X046   J9JQ12   X1XRD4   J9K106   A0A0N4XY30   J9JVX5   J9LK68   A0A1B6HG03   A0A016V127   A0A016U6U0   J9LKV2   A0A0P4WIX9   A0A0N4WU61   A0A016VFC3   A0A016VFZ3   S4P9J6   A0A0N4YQB3   J9KXH3   X1XBY4   A0A1E1WBV4   A0A023EYN9   A0A1E1VXQ8   A0A0D6LHL4   J9JPM8   T0MM39   A0A016VEZ7   A0A0P4W9M6   W6NB59   T1I3L1   A0A0N4WS15   A0A1B6IUZ3   A0A183G8F5   A0A3P8A9H6   V5GG67   A0A1E1WHA1   A0A182W9Z3   A0A016T3Q5   A0A183F4M8   A0A3P7UFA4   A0A368GTV8   A0A2B4SRV7   A0A0D8XH70   A0A2S2QUS6   J9KLM1   J9LP86   A0A087TLT3   A0A1B6K2A9   A0A1A9ZX35   A0A1B6E873   A0A0N4WGU5   A0A1A9VCE3   A0A0N4UUN0   A0A2H1V5W0   W4ZHM1   A0A1A9XAR1   A8J4K9   H9IWM5   A0A1B6LW93   A0A1B6KKZ3   A0A1B6H7X0   A0A0A9W0B8   A0A1B6LFF4   H9J421   A0A183G7U2   A0A3P8A9A8   A0A1B6J0Q3   A8J4K3   A8J4K6   A0A0A9W581  

KEGG

NA   

GO

GO:0016021   GO:0046983   GO:0003723   GO:0015935   GO:0003735   GO:0006412   GO:0008270   GO:0005634   GO:0003677  

Subcellular location

Nucleus  

Length:

485

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.00582

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03117

outside

1  -  485

 

 

Pi

370.510352

Theta

235.012597

Tajima's D

1.978067

CLR

0

CSRT

0.879606019699015

Interpretation

Uncertain