SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01682
Pre Gene Modal
BGIBMGA006112
Annotation
uncharacterized_LOC106127760_precursor_[Papilio_xuthus]
Location
Bomo_Chr4(+):1516473-1522009      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.918
 

Sequence

CDS
ATGCTGGTCGTCACTACTCGTCACGTTATGAAGCTAATAGTCGTGATTAGGATAGATTCAAAATATATAGAAAATGATTTCGAAGTAAGAAGACAGCCACCTGCACAACACCCTGGCTTCAATGAGCACCAAACGAGGTTCGGCCTGAACTCACCTCTGCAGAGCTTCCAGCAAGCAGGTCTACTGACCAGTCCCGCGCCGACTCTGCAGTACCAGCAGCAACCTTACCCGCAGCTCCAACAGCCATATGTTCCGCAATTCAACGGTCTTCTAACACAGAACATTCCATCTCAGAACTTACCGATTCAAAGCGTTCCTAATGTTGGCGGTCAAGGCACCTTGCAATTGCCTAGCAATGCGTTCCAATTTAGTCCATCCCAGAGCGCTAACCCTGCACTGCTGCAGAACAACTACCAACAGAACATTAGACAGCTATCACAACAGACACAGAACATTTTACCGCAAGCCGCCCCCACCTTACCGACCTATCAAAACATACCCACATCACAAAATCCACCTGTTTTTAATCCCAATCCGCCGCAACCCGTGAACATCGGACAGCAAAACCCTACCGCTGCTTTCCTGCCAACCGTAGCAGCAGCTCAAAGTCAACCTATTTTCAATAGACCCAATCCCATCACTATCCAACCGGCCCCAAATCTAGCTCCTCAGAATCCCCTAAATCTTAACAATGGTCAAATACCATTCCAATCAACGATAAATCAACAAGCACCTGTGTATTCAAACGAACAAATACAAAGTATCCTAGAGCAACAATCGAAAGAAAATTTAGAGAAATTGAAAGAACTTCAAGAAAGAGCACGTATCATTCAGAAGCATCAGGAGTTTGTTGAAAAGCAACAACAGAAACAACAGGTACAAGTTCAGAAACTACACGAAGAATTCGTTAGTAAACAAGCTACTAAAACCGTTCCGACCATACCCACGACGGAAAGCTACGATTACTATACCAACAGGCAGGTAGAAAAGACTAGCAGCAGACCCATTCAGCCTCATGAGACGGATTTATTCAGGAAAGCTGTCGAAATGTACGAAAAAGATCATCCGACTACAACGACATCGACCACAACGACTACCACGACCACAACGCCGGCACCTCCGACGCGCAGGTACACAGCGAGACCGAAATCCAGAACCAGACATCCGCCTCAGGACAGAAACAAACAAAAATTGTACAACGAAATCAAAAATCTACTGGAGGAGAGCGAAACCAAAGGATTTGACGACAACCTGAGAGCTAAAAGCGCTGAGCTACTACAGAAACCAGACATTCTGAAGCAACTTAAGGTAGCGTTGGCCGAAAATCCTGAGGATTTTAATGGCAAGAACTTCACGTCTCGAGAAATCAATCTGAACGGACAGAAGTTCGAAGTCATCAGGACGACGAACCCTAATCTTATTCCGAAGGGAGCGATCACGGCAGAAAGTTCAAATTTAGCGCACATATCGTCCGCCGTCCGTGAATTACAAAAAGACAATCGAAACACATTTGAAGATCTGACAAAAGGCGTTTTACCTCCAGGAGCGAATTTCGAACTCGTCAAACAGGCAGAGAACGGCAAACTTGAAGAGGTTTCCAAAATACCAACTGATTTGCAAAACAAAAAGAAAGTAACGTTTGTTTTCCTCGAAGAACAAGACGATGGATCATATAAGGTTAAAGGAGTGAAAGCGAACGGTCAACAGACTGAAGAAGGTCCTGAGGTCGAAAATATTTTAAATAAGATTAAGAGGGGCGAAATACAATTACCAGGACCGACTAAAATTTCCAATAGCTTATTCGTAGGTAGTACAACTACAACTACAACTACATCTAGACCGTCGACTGAATCCACTGACTACGTAGCGGCCTCATCACACCTACCTTCGAGCTACTCGAGCTATGTAACAGCATCTAGTCACGGGACAAGCGGACTGACCAGTCCCATCTATACAACTCCAACGCCCACCTACCAGAGTCACCGTTCTCAATCAACAAGAACAACATCGCAGCAGACGCAACCCTACGTACCCCCGACTGTGGCAGTCTCCACTACAGAAAGACATGCAGCCAAATCGAGTTCTCCATCATACGAATACTCGTCGAGCAGAAACAGCATCAGCCATGCTCCAAGGATCACATATCCTAGTTCCACTTTCTCAACTATCATCAACTCGACCCCGACCTATAGGACAACACCCAAAGACTTGGTTATCATTGGATCTAGTACAGTCCCTACTACTTATAGCGAACCAACTCCACATTTTAATGATAGAGAAGCAAACCCAGGTCTTGTGGAAATTTTGAAAGAGAACGGACTATTTGCGACCGCGAAGTATCTGAAACAATCGGGTTTAGATAGTATCTTGAATGAAACCGGACCATACACGATCTTCGCCCCGACCGACAAGGCGTTTAGGACGTTGCTGGTACAGCTCGGCGGACCCGACAAAGCTGAAGAGAAGTTCAAGGACAATCCACGGTTACTGAGTGGTCTGCTCCTCCACCACGTCATCCCAGGAGCTTTCGACATCGGATCCCTGCAGGATGAGATGACCGGTGTCTCCCTCGCCGGCACCCAACTCAGAGTCAACCAATATGATATGCATGACGTCGAGTGGAATGAAGTAAAGGTCACCACCATCAACGGGGCCAGGGTGCTGGAGGACAAAAAGGACATTCATATCCCACAGGGCATTGCTCACGCGGTGGACAGGGTGATGTTCCCTCTGCCCGTCGGGGACCTGGTGCAGACCCTGCAAGCGGACCGCGACCGCAGGTTCACCACCTTCCTGAAGGCGCTCCAGGCCAGCGGCTTTGTCGACACGCTGGCCGAAAGCAAAACCTACACGGTATTCGCGCCGACGGACGCGGCGTTCGCGCGCCTGCCCCCCGCCGAGCTGGCCCAGCTCACGGAGCGCGCGCGGGCGCACGAGCTGGTGGCGCGCCACGTGCTGCCCGGCACGCTCTACAGCGCCGGCATGCGCTACTACCAGCTGCGCAACTCTATGGAAGACGCTAAGCCCCTCACGCTGCAGAAAAACTCTGGTCGCATTAAAGTGAACAACGCGCAAGTGGTGACGCACAACATCCCGGCAACGAACGGCGTCATACACGCCATCGACAACGTGCTGTAG
Protein
MLVVTTRHVMKLIVVIRIDSKYIENDFEVRRQPPAQHPGFNEHQTRFGLNSPLQSFQQAGLLTSPAPTLQYQQQPYPQLQQPYVPQFNGLLTQNIPSQNLPIQSVPNVGGQGTLQLPSNAFQFSPSQSANPALLQNNYQQNIRQLSQQTQNILPQAAPTLPTYQNIPTSQNPPVFNPNPPQPVNIGQQNPTAAFLPTVAAAQSQPIFNRPNPITIQPAPNLAPQNPLNLNNGQIPFQSTINQQAPVYSNEQIQSILEQQSKENLEKLKELQERARIIQKHQEFVEKQQQKQQVQVQKLHEEFVSKQATKTVPTIPTTESYDYYTNRQVEKTSSRPIQPHETDLFRKAVEMYEKDHPTTTTSTTTTTTTTTPAPPTRRYTARPKSRTRHPPQDRNKQKLYNEIKNLLEESETKGFDDNLRAKSAELLQKPDILKQLKVALAENPEDFNGKNFTSREINLNGQKFEVIRTTNPNLIPKGAITAESSNLAHISSAVRELQKDNRNTFEDLTKGVLPPGANFELVKQAENGKLEEVSKIPTDLQNKKKVTFVFLEEQDDGSYKVKGVKANGQQTEEGPEVENILNKIKRGEIQLPGPTKISNSLFVGSTTTTTTTSRPSTESTDYVAASSHLPSSYSSYVTASSHGTSGLTSPIYTTPTPTYQSHRSQSTRTTSQQTQPYVPPTVAVSTTERHAAKSSSPSYEYSSSRNSISHAPRITYPSSTFSTIINSTPTYRTTPKDLVIIGSSTVPTTYSEPTPHFNDREANPGLVEILKENGLFATAKYLKQSGLDSILNETGPYTIFAPTDKAFRTLLVQLGGPDKAEEKFKDNPRLLSGLLLHHVIPGAFDIGSLQDEMTGVSLAGTQLRVNQYDMHDVEWNEVKVTTINGARVLEDKKDIHIPQGIAHAVDRVMFPLPVGDLVQTLQADRDRRFTTFLKALQASGFVDTLAESKTYTVFAPTDAAFARLPPAELAQLTERARAHELVARHVLPGTLYSAGMRYYQLRNSMEDAKPLTLQKNSGRIKVNNAQVVTHNIPATNGVIHAIDNVL

Summary

Uniprot
H9J9C0   A0A194PYV9   I4DIJ1   A0A194R6U6   I4DM15   A0A2H1VIH5   + More
A0A212EJ46   A0A2A4KA04   A0A2W1BM94   A0A0L7LA09  
Pubmed
19121390    26354079    22651552    22118469    28756777    26227816    + More
EMBL
BABH01004449    KQ459584    KPI98511.1    AK401109    BAM17731.1    KQ460644    + More
KPJ13244.1    AK402333    BAM18955.1    ODYU01002731    SOQ40596.1    AGBW02014536    OWR41488.1    NWSH01000011    PCG80909.1    KZ150052    PZC74397.1    JTDY01002109    KOB72086.1   
Proteomes
UP000005204    UP000053268    UP000053240    UP000007151    UP000218220    UP000037510    + More
PRIDE
H9J9C0   
Pfam
PF02469   Fasciclin
Interpro
IPR036378   FAS1_dom_sf        + More
IPR000782   FAS1_domain       
SUPFAM
SSF82153   SSF82153       
Gene 3D
2.30.180.10    
ProteinModelPortal
H9J9C0   A0A194PYV9   I4DIJ1   A0A194R6U6   I4DM15   A0A2H1VIH5   + More
A0A212EJ46   A0A2A4KA04   A0A2W1BM94   A0A0L7LA09  
PDB
5NV6     E-value=4.09725e-16,     Score=211

Ontologies

KEGG
101735700    no KO assigned | (RefSeq) uncharacterized LOC101735700
GO

Topology

Length:
1045
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00567999999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  1045
 
 

Population Genetic Test Statistics

Pi
180.898049
Theta
160.265769
Tajima's D
0.06902
CLR
160.325425
CSRT
0.387180640967952
Interpretation
Uncertain
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