SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01674
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.629 Nuclear   Reliability : 1.385
 

Sequence

CDS
ATGACATTTGGCGCGTGGAACGTGAGAACGCTTCTTGATCGAGATGGCAACGCCTGCCCTGAACGCAAGACCGCCATAGTAGCTCGGGAACTTCATCGCTACAACGTAGATGTGGCTGCTCTCAGCGAAACACATCTTGCCGATGAAGGAGAGCTGGTGGAAGTAGGTGCTGGTTATACTTTCTTCTGGAAAGGTACCGCTGCCTCTGAAACGCGACACTCAGGTGTAGGATTTGCCATCAAGAATCACTTAGTAAAGCGATTAGAGGAGTACCCTGTACATATCTCGGACCGCGTTACCACACTGCGAGTTCACCTGGATAAAGACAATTACCTTAATGTCATCAGTGTATATGCTCCAACGCTTGACAAGTCTGATGACATTAAGGACAAATTCTATGGGGAAGTGACTCTTTGCCTTGACAGTATAAACGCCAGAGAGCAGGTACTATTGCTGGGCGACTTCAATGCCAGGGTTGGTCGGGACTATGAGGCTTGGCCTGGAGTTCTGGGTAGACACGGAGTCGGCAACATGAACAGCAATGGTCAGTTGCTGCTCAGTCTTTGTGCTCAATACGGTCTAGCAATTACGAACACTATGTTTAGACTTGCCGCTAAGTACAAGACAACATGGATGCACCCAAGATCCAAGCACTGGCATTTGATCGACTATGCTATCGTAAGGCAAAGAGATTTCAGCCAAGTGCAGATCACCCGTGTTATGCGTGGTGCGCACTGCTGGTCTGACCACCGACTTATTGTCACTAAGCTACGACTCCGCCTCCGCCGCCCGCGTAGATCTCCTATGAAAAAGCTTGCGTCTTTGGACATAGAGAAGCTAAGAGATCCTGAGGTGAGGAAGAACTATGCTGAAGTTTTGTCTAAGAAGCTGTTGCCAGTTAATGAGACAGATGATGTTGATGCTGACTGGGGAGCTTTATCATCTCATATCATGGATACCGCTTCAATTGCACTGGGTAGGAAATGCCGTCGTAATGAAGACTGGTTTGATGGAAATGATGAAGTTTTGCGGGAGGCACTCGACAAACACCGTGATCTCTTGCGACAGCACAGAAGGCGTAAAGGAAGCGTTGCGGCGGTCAAAGCTAGTGACCTTGAACTGCGCAAGCTGTCTCGACAAATAAAAGACAAGTGGTGGCAGGACAAAGCTATTCATATGCAATGGCTCACTGACACAAACCAGCTCGGTGAGTTCTATAGCGAGGTGCGCAAGCTGATGGGTACATCCAACCATGCAAAGGTTCCTTTAAGGGCTCTAGATAGTAGGCACCTCTTAACAAGCAAGGAGGATGTACTAAGGCGCTGGGCAGAGCACTTCAATGCCCTGCTGAATGTGGATCGATCAGCAGATCTGCAAAGCATCGCTTTAATGCCTCAACTCCCTCTTGCCCTTGAGCTGGACGAGCCCCTATTGCGTGACGAGGTTGTTACTGCCATCAGACAGCAAAAAAATAAAAGGGCGGCTGGCGCTGACCTTATACCAGGAGAGCTGATCAAGTACGGTGGAGAGGATTTGCACACGTTGGTTTGGGAACTGTTTGTTCGTATGTGGGAGGAAGAGCGCGTTCCGGATAGCTTTAAAGTATCGCGCATAACTGCTCTCTATAAGAACAGGGGCGACCGATCTGACTGCGACTCCTACCGCGGTATTTCGCTCCTATCGGCCCCCGGAAAGGTCTTTGCTAGGGTACTCTTAAACCGCCTAAAGGACTTATCTGAAAAGATCCTGCCCGAAACTCAGTTTGGCTTTCGACCGGATCGAGGCACATGCGAAGCGATCTTCTCTGTGCGTCAACTACAAGAAAAGAGCAGAGAACAGGGTCGTCAGCTGTACCTCTGTTTTGTTGACCTGGAGAAGGCTTTTGACAGCGTGCCTCGCGAAGCCTTATGGTTGGTGTTACGGAAGCTCGGATGCACAGAAAAGTTTGTGGCGCTTCTTAGACTCCTGCATGACGACATGCAATGCTGCGTCACTGTAGATGGTGAACAGACGGGCTTCTTCCCCGTTACCTGTGGGGTGAAGCAAGGATGCGTCTTAGCGCCTACTCTGTTCGCCTTGTACTTTGCGGTCGTAGTTAGAGAGGTTCTACAAACTGTTTCCCAAGGAGTCCGCATCCGCTTCCGTACGGACGGCAGCCTTTTCAATTTGGCTAGACTTAAGGCTCGCACCCAAGTGTCGTATGCATTGATCACTGAGATCATTTATGCTGATGACTTGTGCTTCTTAGCAGAATCCCCAGACGGCCTGCAACAGCTGATGTCCGTTTTTCACCAAGCCTGCCGTAAATTCGGCCTGAAGATTAGTGTCGATAAGACGGAGGTGATGTCCCTGGACAGTCACGGTCACGAGACACTAACCATAAAGCTTGGTGAGGATGTGTTGAAGCAGGTGGATAAATATCGCTATCTGGGGAACACTTTAACATCCAAGTGTGACCTTGATGATGAGATCAATAGCAGGGTCGGTGCCGCTGCGGCAGCATTTGGAAAGCTATATTCCAAGGTCTTCTGCTCACACGACCTTAAGTTGGCCACTAAAATCTCAGTTTACATGGCAATTGTGCTGCCAAGCCTCCTATACTCCTCCGAGTCGTGGTGTGTGTACCGCCGCCACATTCGCACTCTGGATCGCTTCCACCTTAAATGCCTTCGTGCCATCATGAAAATCAGATGGTCTGATAGAGTGCGAAATACCGAAGTCTTGCGACGTGCCAATGTTGGTGGCATTGAGACCTATTTAATGCGCCGGCAGCTTCGATGGTGCGGTCATGTATCACGCATGACGGAGGAAAGAGTGGCGAAGCGCATCTTCTTCTCTGAATTGCAGGATGGCAAGCGAAAGCATGGCGGACAACTCCTGCGGTACAAGGATGTCGTGAAACGACACATGAAGAGATGTGATATAGAGCCCTCTCAATGGGAGCGCTTGGCAGCACAGCGGCCAGAATGGCGCAGGATGGTGAACAGCAAAGTACGCGAGTTCGAGGATCAGCGTAAAGCTGACCTTGATTACAAACGCGACCAGTTGAAGGCCCGCCCACCTGCTGCCATAACCTATAATTATGAGAACGGCGTGCTTACGTGCCCTCAATGCGCAAGGAGTTTTGCCGCAAAGATAGGCTATATAAGCCATCTTCGAGCGCACGAGCGCCAAATCGACGGATAG
Protein
MTFGAWNVRTLLDRDGNACPERKTAIVARELHRYNVDVAALSETHLADEGELVEVGAGYTFFWKGTAASETRHSGVGFAIKNHLVKRLEEYPVHISDRVTTLRVHLDKDNYLNVISVYAPTLDKSDDIKDKFYGEVTLCLDSINAREQVLLLGDFNARVGRDYEAWPGVLGRHGVGNMNSNGQLLLSLCAQYGLAITNTMFRLAAKYKTTWMHPRSKHWHLIDYAIVRQRDFSQVQITRVMRGAHCWSDHRLIVTKLRLRLRRPRRSPMKKLASLDIEKLRDPEVRKNYAEVLSKKLLPVNETDDVDADWGALSSHIMDTASIALGRKCRRNEDWFDGNDEVLREALDKHRDLLRQHRRRKGSVAAVKASDLELRKLSRQIKDKWWQDKAIHMQWLTDTNQLGEFYSEVRKLMGTSNHAKVPLRALDSRHLLTSKEDVLRRWAEHFNALLNVDRSADLQSIALMPQLPLALELDEPLLRDEVVTAIRQQKNKRAAGADLIPGELIKYGGEDLHTLVWELFVRMWEEERVPDSFKVSRITALYKNRGDRSDCDSYRGISLLSAPGKVFARVLLNRLKDLSEKILPETQFGFRPDRGTCEAIFSVRQLQEKSREQGRQLYLCFVDLEKAFDSVPREALWLVLRKLGCTEKFVALLRLLHDDMQCCVTVDGEQTGFFPVTCGVKQGCVLAPTLFALYFAVVVREVLQTVSQGVRIRFRTDGSLFNLARLKARTQVSYALITEIIYADDLCFLAESPDGLQQLMSVFHQACRKFGLKISVDKTEVMSLDSHGHETLTIKLGEDVLKQVDKYRYLGNTLTSKCDLDDEINSRVGAAAAAFGKLYSKVFCSHDLKLATKISVYMAIVLPSLLYSSESWCVYRRHIRTLDRFHLKCLRAIMKIRWSDRVRNTEVLRRANVGGIETYLMRRQLRWCGHVSRMTEERVAKRIFFSELQDGKRKHGGQLLRYKDVVKRHMKRCDIEPSQWERLAAQRPEWRRMVNSKVREFEDQRKADLDYKRDQLKARPPAAITYNYENGVLTCPQCARSFAAKIGYISHLRAHERQIDG

Summary

EMBL
FJ265556    ADI61824.1    KU315381    AOE48155.1    AGCU01074235    AGCU01019305    + More
AGCU01078395    AGCU01195602    HACG01049402    HACG01049403    HACG01049405    HACG01049409    CEK96267.1    CEK96268.1    CEK96270.1    CEK96274.1    AGCU01099253    AAGJ04079542    AGCU01159961    GEEE01015618    JAP47607.1    LSMT01000835    PFX14128.1    AFYH01233515    LSMT01000050    PFX30432.1    AFYH01086022    GCES01103567    JAQ82755.1    GCES01145874    JAQ40448.1    LSMT01001244    PFX12648.1    LSMT01000478    PFX17357.1    CDMZ01001569    CEM34549.1    PDHN01000949    PGH37547.1    GEZM01098732    JAV53782.1    FN356221    CAX83710.1    FJ265558    ADI61826.1    BN000794    CAJ00236.1    GGMR01020071    MBY32690.1    GEZM01082534    GEZM01082533    JAV61334.1    GEZM01043748    JAV78864.1    HE799691    CCH14900.1    PYGN01000070    PSN55417.1    PYGN01000020    PSN57453.1    PYGN01000203    PSN51319.1    PYGN01000219    PSN50892.1    PYGN01000324    PSN48495.1    GAPW01000107    JAC13491.1    PYGN01001004    PSN38555.1    GEZM01039814    JAV81167.1    JARK01001422    EYC04705.1    GFTR01008437    JAW07989.1    PYGN01000372    PSN47498.1    PYGN01003402    PSN29545.1    ABLF02039015    GGFK01005184    MBW38505.1    GGFK01003613    MBW36934.1    AJVK01001578    GGFK01001798    MBW35119.1    GBBI01004261    JAC14451.1   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR000477   RT_dom       
IPR013087   Znf_C2H2_type       
IPR005135   Endo/exonuclease/phosphatase       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR027124   Swc5/CFDP2       
SUPFAM
SSF56219   SSF56219       
Gene 3D
PDB
6AR3     E-value=0.0822626,     Score=88

Ontologies

Topology

Length:
1061
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.684060000000001
Exp number, first 60 AAs:
8e-05
Total prob of N-in:
0.01136
outside
1  -  1061
 
 

Population Genetic Test Statistics

Pi
36.794631
Theta
3.133118
Tajima's D
0.430839
CLR
26.407888
CSRT
0.534573271336433
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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