Gene

KWMTBOMO01674

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr4(+):1295870-1299220      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.629 Nuclear   Reliability : 1.385

CDS

ATGACATTTGGCGCGTGGAACGTGAGAACGCTTCTTGATCGAGATGGCAACGCCTGCCCTGAACGCAAGACCGCCATAGTAGCTCGGGAACTTCATCGCTACAACGTAGATGTGGCTGCTCTCAGCGAAACACATCTTGCCGATGAAGGAGAGCTGGTGGAAGTAGGTGCTGGTTATACTTTCTTCTGGAAAGGTACCGCTGCCTCTGAAACGCGACACTCAGGTGTAGGATTTGCCATCAAGAATCACTTAGTAAAGCGATTAGAGGAGTACCCTGTACATATCTCGGACCGCGTTACCACACTGCGAGTTCACCTGGATAAAGACAATTACCTTAATGTCATCAGTGTATATGCTCCAACGCTTGACAAGTCTGATGACATTAAGGACAAATTCTATGGGGAAGTGACTCTTTGCCTTGACAGTATAAACGCCAGAGAGCAGGTACTATTGCTGGGCGACTTCAATGCCAGGGTTGGTCGGGACTATGAGGCTTGGCCTGGAGTTCTGGGTAGACACGGAGTCGGCAACATGAACAGCAATGGTCAGTTGCTGCTCAGTCTTTGTGCTCAATACGGTCTAGCAATTACGAACACTATGTTTAGACTTGCCGCTAAGTACAAGACAACATGGATGCACCCAAGATCCAAGCACTGGCATTTGATCGACTATGCTATCGTAAGGCAAAGAGATTTCAGCCAAGTGCAGATCACCCGTGTTATGCGTGGTGCGCACTGCTGGTCTGACCACCGACTTATTGTCACTAAGCTACGACTCCGCCTCCGCCGCCCGCGTAGATCTCCTATGAAAAAGCTTGCGTCTTTGGACATAGAGAAGCTAAGAGATCCTGAGGTGAGGAAGAACTATGCTGAAGTTTTGTCTAAGAAGCTGTTGCCAGTTAATGAGACAGATGATGTTGATGCTGACTGGGGAGCTTTATCATCTCATATCATGGATACCGCTTCAATTGCACTGGGTAGGAAATGCCGTCGTAATGAAGACTGGTTTGATGGAAATGATGAAGTTTTGCGGGAGGCACTCGACAAACACCGTGATCTCTTGCGACAGCACAGAAGGCGTAAAGGAAGCGTTGCGGCGGTCAAAGCTAGTGACCTTGAACTGCGCAAGCTGTCTCGACAAATAAAAGACAAGTGGTGGCAGGACAAAGCTATTCATATGCAATGGCTCACTGACACAAACCAGCTCGGTGAGTTCTATAGCGAGGTGCGCAAGCTGATGGGTACATCCAACCATGCAAAGGTTCCTTTAAGGGCTCTAGATAGTAGGCACCTCTTAACAAGCAAGGAGGATGTACTAAGGCGCTGGGCAGAGCACTTCAATGCCCTGCTGAATGTGGATCGATCAGCAGATCTGCAAAGCATCGCTTTAATGCCTCAACTCCCTCTTGCCCTTGAGCTGGACGAGCCCCTATTGCGTGACGAGGTTGTTACTGCCATCAGACAGCAAAAAAATAAAAGGGCGGCTGGCGCTGACCTTATACCAGGAGAGCTGATCAAGTACGGTGGAGAGGATTTGCACACGTTGGTTTGGGAACTGTTTGTTCGTATGTGGGAGGAAGAGCGCGTTCCGGATAGCTTTAAAGTATCGCGCATAACTGCTCTCTATAAGAACAGGGGCGACCGATCTGACTGCGACTCCTACCGCGGTATTTCGCTCCTATCGGCCCCCGGAAAGGTCTTTGCTAGGGTACTCTTAAACCGCCTAAAGGACTTATCTGAAAAGATCCTGCCCGAAACTCAGTTTGGCTTTCGACCGGATCGAGGCACATGCGAAGCGATCTTCTCTGTGCGTCAACTACAAGAAAAGAGCAGAGAACAGGGTCGTCAGCTGTACCTCTGTTTTGTTGACCTGGAGAAGGCTTTTGACAGCGTGCCTCGCGAAGCCTTATGGTTGGTGTTACGGAAGCTCGGATGCACAGAAAAGTTTGTGGCGCTTCTTAGACTCCTGCATGACGACATGCAATGCTGCGTCACTGTAGATGGTGAACAGACGGGCTTCTTCCCCGTTACCTGTGGGGTGAAGCAAGGATGCGTCTTAGCGCCTACTCTGTTCGCCTTGTACTTTGCGGTCGTAGTTAGAGAGGTTCTACAAACTGTTTCCCAAGGAGTCCGCATCCGCTTCCGTACGGACGGCAGCCTTTTCAATTTGGCTAGACTTAAGGCTCGCACCCAAGTGTCGTATGCATTGATCACTGAGATCATTTATGCTGATGACTTGTGCTTCTTAGCAGAATCCCCAGACGGCCTGCAACAGCTGATGTCCGTTTTTCACCAAGCCTGCCGTAAATTCGGCCTGAAGATTAGTGTCGATAAGACGGAGGTGATGTCCCTGGACAGTCACGGTCACGAGACACTAACCATAAAGCTTGGTGAGGATGTGTTGAAGCAGGTGGATAAATATCGCTATCTGGGGAACACTTTAACATCCAAGTGTGACCTTGATGATGAGATCAATAGCAGGGTCGGTGCCGCTGCGGCAGCATTTGGAAAGCTATATTCCAAGGTCTTCTGCTCACACGACCTTAAGTTGGCCACTAAAATCTCAGTTTACATGGCAATTGTGCTGCCAAGCCTCCTATACTCCTCCGAGTCGTGGTGTGTGTACCGCCGCCACATTCGCACTCTGGATCGCTTCCACCTTAAATGCCTTCGTGCCATCATGAAAATCAGATGGTCTGATAGAGTGCGAAATACCGAAGTCTTGCGACGTGCCAATGTTGGTGGCATTGAGACCTATTTAATGCGCCGGCAGCTTCGATGGTGCGGTCATGTATCACGCATGACGGAGGAAAGAGTGGCGAAGCGCATCTTCTTCTCTGAATTGCAGGATGGCAAGCGAAAGCATGGCGGACAACTCCTGCGGTACAAGGATGTCGTGAAACGACACATGAAGAGATGTGATATAGAGCCCTCTCAATGGGAGCGCTTGGCAGCACAGCGGCCAGAATGGCGCAGGATGGTGAACAGCAAAGTACGCGAGTTCGAGGATCAGCGTAAAGCTGACCTTGATTACAAACGCGACCAGTTGAAGGCCCGCCCACCTGCTGCCATAACCTATAATTATGAGAACGGCGTGCTTACGTGCCCTCAATGCGCAAGGAGTTTTGCCGCAAAGATAGGCTATATAAGCCATCTTCGAGCGCACGAGCGCCAAATCGACGGATAG

Protein

MTFGAWNVRTLLDRDGNACPERKTAIVARELHRYNVDVAALSETHLADEGELVEVGAGYTFFWKGTAASETRHSGVGFAIKNHLVKRLEEYPVHISDRVTTLRVHLDKDNYLNVISVYAPTLDKSDDIKDKFYGEVTLCLDSINAREQVLLLGDFNARVGRDYEAWPGVLGRHGVGNMNSNGQLLLSLCAQYGLAITNTMFRLAAKYKTTWMHPRSKHWHLIDYAIVRQRDFSQVQITRVMRGAHCWSDHRLIVTKLRLRLRRPRRSPMKKLASLDIEKLRDPEVRKNYAEVLSKKLLPVNETDDVDADWGALSSHIMDTASIALGRKCRRNEDWFDGNDEVLREALDKHRDLLRQHRRRKGSVAAVKASDLELRKLSRQIKDKWWQDKAIHMQWLTDTNQLGEFYSEVRKLMGTSNHAKVPLRALDSRHLLTSKEDVLRRWAEHFNALLNVDRSADLQSIALMPQLPLALELDEPLLRDEVVTAIRQQKNKRAAGADLIPGELIKYGGEDLHTLVWELFVRMWEEERVPDSFKVSRITALYKNRGDRSDCDSYRGISLLSAPGKVFARVLLNRLKDLSEKILPETQFGFRPDRGTCEAIFSVRQLQEKSREQGRQLYLCFVDLEKAFDSVPREALWLVLRKLGCTEKFVALLRLLHDDMQCCVTVDGEQTGFFPVTCGVKQGCVLAPTLFALYFAVVVREVLQTVSQGVRIRFRTDGSLFNLARLKARTQVSYALITEIIYADDLCFLAESPDGLQQLMSVFHQACRKFGLKISVDKTEVMSLDSHGHETLTIKLGEDVLKQVDKYRYLGNTLTSKCDLDDEINSRVGAAAAAFGKLYSKVFCSHDLKLATKISVYMAIVLPSLLYSSESWCVYRRHIRTLDRFHLKCLRAIMKIRWSDRVRNTEVLRRANVGGIETYLMRRQLRWCGHVSRMTEERVAKRIFFSELQDGKRKHGGQLLRYKDVVKRHMKRCDIEPSQWERLAAQRPEWRRMVNSKVREFEDQRKADLDYKRDQLKARPPAAITYNYENGVLTCPQCARSFAAKIGYISHLRAHERQIDG

Uniprot

D7F171   A0A3P9H393   A0A1B3B7F1   K7EXX0   K7EZH1   K7F1H9   + More
A0A3B3I759   A0A3B3HTA8   A0A0B7BSR0   K7EZE2   A0A3P9JDD8   W4YWJ6   K7EWE4   A0A0X3PCE5   A0A2B4RCM2   H2ZZE9   A0A3B3HUN9   A0A2B4SPJ1   H3B828   A0A146SQ82   A0A146P9F6   A0A3B5Q8W9   A0A2B4R8E3   A0A2B4RLZ4   A0A3B5R2H7   A0A3B5QX16   A0A3B5QFT5   A0A3P9PV83   A0A0G4GUQ4   A0A2B7ZXS2   A0A1Y1JWU5   C7C207   D7F173   Q4QQE8   A0A2S2PT92   A0A1Y1KJ02   A0A3P9LYS6   A0A1Y1LZ08   A0A060Q6A2   A0A2P8ZFZ0   A0A2P8ZLT6   A0A2P8Z488   A0A2P8Z313   A0A3P9M1B5   A0A2P8YWA2   A0A023EX67   A0A2P8Y2S1   A0A1Y1MCV0   A0A016TPK0   A0A224XIY2   A0A2P8YTB7   A0A2P8XC08   J9KNQ8   A0A2M4ACI4   A0A2M4A809   A0A1B0DRK3   A0A3B3H8A8   A0A2M4A2X8   A0A023F0F3  

Pubmed

20470440    17554307    27522227    17381049    9215903    23542700    + More
28004739    15939396    29403074    24945155    25730766    25474469   

EMBL

FJ265556    ADI61824.1    KU315381    AOE48155.1    AGCU01074235    AGCU01019305    + More
AGCU01078395    AGCU01195602    HACG01049402    HACG01049403    HACG01049405    HACG01049409    CEK96267.1    CEK96268.1    CEK96270.1    CEK96274.1    AGCU01099253    AAGJ04079542    AGCU01159961    GEEE01015618    JAP47607.1    LSMT01000835    PFX14128.1    AFYH01233515    LSMT01000050    PFX30432.1    AFYH01086022    GCES01103567    JAQ82755.1    GCES01145874    JAQ40448.1    LSMT01001244    PFX12648.1    LSMT01000478    PFX17357.1    CDMZ01001569    CEM34549.1    PDHN01000949    PGH37547.1    GEZM01098732    JAV53782.1    FN356221    CAX83710.1    FJ265558    ADI61826.1    BN000794    CAJ00236.1    GGMR01020071    MBY32690.1    GEZM01082534    GEZM01082533    JAV61334.1    GEZM01043748    JAV78864.1    HE799691    CCH14900.1    PYGN01000070    PSN55417.1    PYGN01000020    PSN57453.1    PYGN01000203    PSN51319.1    PYGN01000219    PSN50892.1    PYGN01000324    PSN48495.1    GAPW01000107    JAC13491.1    PYGN01001004    PSN38555.1    GEZM01039814    JAV81167.1    JARK01001422    EYC04705.1    GFTR01008437    JAW07989.1    PYGN01000372    PSN47498.1    PYGN01003402    PSN29545.1    ABLF02039015    GGFK01005184    MBW38505.1    GGFK01003613    MBW36934.1    AJVK01001578    GGFK01001798    MBW35119.1    GBBI01004261    JAC14451.1   

Proteomes

UP000265200    UP000007267    UP000001038    UP000007110    UP000225706    UP000008672    + More
UP000002852    UP000242638    UP000265180    UP000245037    UP000024635    UP000007819    UP000092462   

PRIDE

D7F171    D7F173   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR000477   RT_dom       
IPR013087   Znf_C2H2_type       
IPR005135   Endo/exonuclease/phosphatase       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR027124   Swc5/CFDP2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F171   A0A3P9H393   A0A1B3B7F1   K7EXX0   K7EZH1   K7F1H9   + More
A0A3B3I759   A0A3B3HTA8   A0A0B7BSR0   K7EZE2   A0A3P9JDD8   W4YWJ6   K7EWE4   A0A0X3PCE5   A0A2B4RCM2   H2ZZE9   A0A3B3HUN9   A0A2B4SPJ1   H3B828   A0A146SQ82   A0A146P9F6   A0A3B5Q8W9   A0A2B4R8E3   A0A2B4RLZ4   A0A3B5R2H7   A0A3B5QX16   A0A3B5QFT5   A0A3P9PV83   A0A0G4GUQ4   A0A2B7ZXS2   A0A1Y1JWU5   C7C207   D7F173   Q4QQE8   A0A2S2PT92   A0A1Y1KJ02   A0A3P9LYS6   A0A1Y1LZ08   A0A060Q6A2   A0A2P8ZFZ0   A0A2P8ZLT6   A0A2P8Z488   A0A2P8Z313   A0A3P9M1B5   A0A2P8YWA2   A0A023EX67   A0A2P8Y2S1   A0A1Y1MCV0   A0A016TPK0   A0A224XIY2   A0A2P8YTB7   A0A2P8XC08   J9KNQ8   A0A2M4ACI4   A0A2M4A809   A0A1B0DRK3   A0A3B3H8A8   A0A2M4A2X8   A0A023F0F3  

PDB

6AR3     E-value=0.0822626,     Score=88

KEGG

101741608    no KO assigned | (RefSeq) uncharacterized LOC101741608

GO

GO:0004519   GO:0003676   GO:0003964   GO:0006355   GO:0046872   GO:0003677   GO:0003700   GO:0006508   GO:0006811   GO:0016020   GO:0005515   GO:0003779   GO:0016021  

PANTHER

PTHR23227  

Length:

1061

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.684060000000001

Exp number, first 60 AAs:

8e-05

Total prob of N-in:

0.01136

outside

1  -  1061

 

 

Pi

36.794631

Theta

3.133118

Tajima's D

0.430839

CLR

26.407888

CSRT

0.534573271336433

Interpretation

Uncertain