Silkworm Genome Informatics Database

Gene

KWMTBOMO01670

Pre Gene Modal

BGIBMGA006040

Annotation

PREDICTED:_nuclear_factor_of_activated_T-cells_5_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr4(-):1221811-1223489 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.468 PlasmaMembrane Reliability : 1.091

CDS

ATGTCGCTCGACGCACAGGCCCAGATGAGCTTCGTGAGCAGTTATGACTCGATGAAATTGTCGCCGGCCACCCCCAGCCAGGGAGAGTCGCCGACCTCTATCGTTTCGTTTACCCAGCAACTGCAAGCCATCCAGACCCAGGCTCAGACCGACAAGATGGTAGAGTCCGTCACCGCGGCCTTGTTCAACACTGACGAAAACTCCGGTCCGATATACCCGCAGATGTTACCAATGTCCACTATGGAATCAATGAGGCATCTCATCTCTTCTAAAAACAACATGGATCCTTTAGGAACCGAATTGAAGGTCCTCAACCCCGAGCTAATGATCACGGATACTGCGATGCAGTCGACCGTGCTGCAGACCGCTAACGAGCAACGACTCATGGTCTACAACCAGATGACATCCGGCCGAGCCGAAGAGAGATTCAACCCCTTTGGAAATATGACCAAGCTCGAGATGGAAACCTCCTCGGCGATATCGCAACAGAACGCACAGATGGAGGCGCTAGTCGAGGACGCTATGAAGGCCACCGCGGCAATGTTGCCTGCCGACGCGGCCAAACTAGACGAGCTAGTCAACTCTCGCGTGGACGACCATTTGTCGGCGTCGTCCGCCTCGCCATCGGGCGGGTCCCACGCTTCCGACGTCCTGCTGAGTCCGGGCGCCGGGGTGGTGACGCGGGGACCGGCCGCCGACTTGTTGCCCTCCGCCGCCATCTCGCCCGACGTCATCCTCAACCCACAAGTGTCACCCAGCATGCTATGCGACGCCAATCAGCACATGGTGATGCCGACCGGAACAGCACCCGAAGACCTCATGATGCTGCCGGATCAGATGCAGCTCACATCCGTGAAGACTCCACCGGCGGCCGTCAAATCTATGATCTTGAACGCGGCCGCAGAGATCCTGACATCGGACACGACGATGAACGCGCTCGTGAAGTCAGCCATCAACACGGCCAACATCCTGACGACGGAGAGCGCGGCCGAGCAGCCGCCCGCCGAGCCCGCCCCGGAGGCGCCGCTGGTGGCCATGTCGCAGGCCGTGTCGCAAGCCGTGACGCAGGCCGTGTCGCAGGCCGTGTCGCAGGCGGTGTCGCAAGCCGTGTCGCATGAGATGACGGCGCCGGTGCAGGGCCTCACGGACATGAGCGACCAGGACCTGCTCTCCTACATCAACACGAGCACCTTCGACCAGGTGTAA

Protein

MSLDAQAQMSFVSSYDSMKLSPATPSQGESPTSIVSFTQQLQAIQTQAQTDKMVESVTAALFNTDENSGPIYPQMLPMSTMESMRHLISSKNNMDPLGTELKVLNPELMITDTAMQSTVLQTANEQRLMVYNQMTSGRAEERFNPFGNMTKLEMETSSAISQQNAQMEALVEDAMKATAAMLPADAAKLDELVNSRVDDHLSASSASPSGGSHASDVLLSPGAGVVTRGPAADLLPSAAISPDVILNPQVSPSMLCDANQHMVMPTGTAPEDLMMLPDQMQLTSVKTPPAAVKSMILNAAAEILTSDTTMNALVKSAINTANILTTESAAEQPPAEPAPEAPLVAMSQAVSQAVTQAVSQAVSQAVSQAVSHEMTAPVQGLTDMSDQDLLSYINTSTFDQV

Uniprot

H9J948 A0A2H1VZH9 A0A0L7KYR9 A0A194R6V1 A0A2A4IYF6 A0A2A4IZC3 + More
A0A2A4IZR7 A0A2A4IZY2 A0A2W1BGF9 A0A212EWM2 A0A194Q517

Pubmed

19121390 26227816 26354079 28756777 22118469

EMBL

BABH01004424 ODYU01005101 SOQ45644.1 JTDY01004323 KOB68295.1 KQ460644 + More
KPJ13249.1 NWSH01004520 PCG64987.1 PCG64989.1 PCG64986.1 PCG64988.1 KZ150155 PZC72795.1 AGBW02011959 OWR45867.1 KQ459584 KPI98505.1

Proteomes

UP000005204 UP000037510 UP000053240 UP000218220 UP000007151 UP000053268 + More

PRIDE

H9J948

Pfam

PF16179 RHD_dimer + More
PF00554 RHD_DNA_bind

Interpro

IPR011539   RHD_DNA_bind_dom        + More
IPR002909   IPT_dom
IPR014756   Ig_E-set
IPR008967   p53-like_TF_DNA-bd
IPR013783   Ig-like_fold
IPR008366   NFAT
IPR037059   RHD_DNA_bind_dom_sf
IPR032397   RHD_dimer

SUPFAM

SSF49417 SSF49417 + More
SSF81296 SSF81296

Gene 3D

2.60.40.10 2.60.40.340

ProteinModelPortal

H9J948 A0A2H1VZH9 A0A0L7KYR9 A0A194R6V1 A0A2A4IYF6 A0A2A4IZC3 + More
A0A2A4IZR7 A0A2A4IZY2 A0A2W1BGF9 A0A212EWM2 A0A194Q517

KEGG

101735802 K17335 nuclear factor of activated T-cells 5 | (RefSeq) nuclear factor of activated T-cells 5

GO

GO:0003700 GO:0003677

PANTHER

PTHR12533

Length:

401

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00094

Exp number, first 60 AAs:

3e-05

Total prob of N-in:

0.00786

outside

1 - 401

Pi

143.921653

Theta

193.692189

Tajima's D

-0.883281

CLR

0.325952

CSRT

0.161741912904355

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics