Gene

KWMTBOMO01666  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006043

Annotation

PREDICTED:_stathmin_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr4(-):1157057-1168449      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.926

CDS

ATGCTGATAGGACTCGTAAGGGACTCGGTGATGCAGTGCTTCTGCCACTCATGCCGTGCACCCGTTTTACCAGCAGCTCATCGGCGGTCGGCGCCGAAGAAACCGGTCGGTAAACCAAGAACTAAGCAGCCGAAGAAGGTCAAATTCATCACCACCGAAATCCGCTGCCAAGAGATGTCGAAGGGCGGTCTGGCGTACGAGGTGATACTCGCCGAGCCGGTGGGCGTACCGGTCCCCCGTCGCGCCGACTCACCCGAAAAGACTCCTTCCGTCGAAGAGATCCAAGAGAAGCTGAAGGCAGCCGAAGAGAGGAGACGTAGCTTGGAAGCTAGTAAGATGGCCGCCATTGCTCAGAAGATGGCCAAGATCGAGGAGGCGTCCCGCATCCGCAGCGAGCAGACGAATAACTTCATCGTCGCCACCAAGGAGGCTCTCGACGCCAAGATGGAGACCCACGAGGAAAAACGCGAGGCCTACATCAACGAGCTGCGCTCCCGTCTCAAGGATCATCTTGAGGGTGTTGAGAAGACCAGGTTGACCCTGGAACAGCAGACCGCGGAAGTGTACAAGGCCATCGAAGATAAGATGACCACAGCTGCCGACAAGCGTGACGAGAACCTCAAGAAGATGATCGAGCGTCTGCGCGAACATGAGGAACAAGTTCGCAAGGTCCGCGCCGGTAACCAGGAGAAGTTCCAGCAGCTCGAGAGCGCCATCCAGGAGAAGCTGCAGCAGGCCGCCGACCGACGTCTGCTCATTGAAGCTGAGCAGAGAGAGAAACTACGCAACCATAATATTAAACTGGCGGAAGTCCGCTCGGCCGCGACCGCTAAAGTCGAGGAGATCACTAAAGACATTGAGAACAAACTGACCACTGCCGAGCTGAACCGGGAAAAGGAAATACAGAAGAAACTCGATTTCGTCAAGAAGGAGGAGCGGCGCGCCGAGCTGGTCCGGCAGAACAAGAGCGCCCGCACCGAGACCGCGGCCCCGCCCTCCTCCGGCTAG

Protein

MLIGLVRDSVMQCFCHSCRAPVLPAAHRRSAPKKPVGKPRTKQPKKVKFITTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEERRRSLEASKMAAIAQKMAKIEEASRIRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITKDIENKLTTAELNREKEIQKKLDFVKKEERRAELVRQNKSARTETAAPPSSG

Uniprot

A0A2A4J0E4   A0A212EGU9   A0A194PYT7   A0A2H1VXT0   A0A194R606   Q2F5V8   + More
H9J951   A0A2W1BEP9   S4PK18   A0A1E1VXJ2   A0A1W4WWZ6   A0A1Y1KHH0   V9IDF7   A0A088A1N2   A0A067RVS3   A0A1Y1KFR0   A0A1W4WL04   A0A2A3EH98   A0A158NLS3   A0A310SIT1   A0A1Y1KJQ3   A0A1W4WKX0   V9ICY5   A0A2J7QB06   A0A195FVJ9   A0A3L8DK85   A0A0L7QW02   F4X2N7   A0A026WFD0   A0A195BK96   A0A195DSE9   T1HWZ9   B4JAZ6   A0A3B0K0E2   A0A151X7S8   Q29PP7   B4G6H8   A0A034WP48   A0A0L0BW58   B4MUW0   A0A1I8PKU7   T1PDG8   B4KL90   A0A1B6C4P9   B4P0N9   Q8IPK0   B3N5G1   A0A0J9TGV6   A0A1W4VBJ8   B3MKH7   A0A0T6B879   D6WP29   A0A0Q9X530   A0A0L7LQQ1   A0A1Y1KBV1   A0A1L8DCF0   A0A182F4Q3   A0A1Q3G178   A0A0M8ZXL9   K7J4A0   A0A084WG23   A0A182Y6E6   E1ZXM4   A0A1Y1KCC9   Q16KX5   V5I906   A0A2R7VST7   Q7PMA7   A0A1Y1KER4   A0A182PG49   A0A1Y1KFA6   E9IHH3   A0A0Q9X4B1   A0A069DS94   A0A0J9QWU5   Q9VMH3   A0A0P8XFB8   A0A1B6CA71   A0A2J7QAZ9   A0A1W4WVP9   A0A0V0GCW9   A0A0R1DR50   A0A0Q5WJX3   A0A0R3NQI9   A0A0Q9WQP8   A0A3F2YYC7   A0A1I8PKS0   A0A034WQC8   T1PF03   A0A0A9XUA4   A0A232FDE0   A0A1B6DRJ8   J3JUN9   N6U0T7   A0A1W4UXX9  

Pubmed

22118469    26354079    19121390    28756777    23622113    28004739    + More
24845553    21347285    30249741    21719571    24508170    17994087    15632085    25348373    26108605    25315136    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    18362917    19820115    26227816    20075255    24438588    25244985    20798317    17510324    12364791    14747013    17210077    21282665    26334808    25401762    28648823    22516182    23537049   

EMBL

NWSH01004520    PCG64994.1    AGBW02015019    OWR40700.1    KQ459584    KPI98502.1    + More
ODYU01005101    SOQ45639.1    KQ460644    KPJ13253.1    DQ311315    ABD36259.1    BABH01004420    KZ150155    PZC72791.1    GAIX01004725    JAA87835.1    GDQN01011642    GDQN01001149    JAT79412.1    JAT89905.1    GEZM01086735    JAV59005.1    JR039060    AEY58511.1    KK852432    KDR23974.1    GEZM01086740    JAV59000.1    KZ288250    PBC31090.1    ADTU01019764    ADTU01019765    KQ765234    OAD54024.1    GEZM01086732    JAV59007.1    JR039061    AEY58512.1    NEVH01016304    PNF25757.1    KQ981219    KYN44451.1    QOIP01000007    RLU20781.1    KQ414722    KOC62724.1    GL888591    EGI59233.1    KK107238    EZA54767.1    KQ976450    KYM85713.1    KQ980489    KYN15845.1    ACPB03001566    CH916368    EDW02866.1    OUUW01000010    SPP86122.1    KQ982439    KYQ56389.1    CH379058    EAL34245.2    CH479180    EDW28203.1    GAKP01002987    JAC55965.1    JRES01001249    KNC24251.1    CH963857    EDW76305.1    KA646734    AFP61363.1    CH933807    EDW11751.1    GEDC01029088    JAS08210.1    CM000157    EDW87934.1    AE014134    AAN10581.1    AGB92658.1    CH954177    EDV59040.1    CM002910    KMY88470.1    CH902620    EDV31530.1    LJIG01009197    KRT83562.1    KQ971343    EFA03170.1    KRG02885.1    JTDY01000316    KOB77729.1    GEZM01086738    JAV59002.1    GFDF01009933    JAV04151.1    GFDL01001491    JAV33554.1    KQ435803    KOX73185.1    AAZX01006624    ATLV01023433    ATLV01023434    KE525343    KFB49167.1    GL435067    EFN74062.1    GEZM01086736    JAV59004.1    CH477933    EAT34958.1    GALX01003770    JAB64696.1    KK854046    PTY10238.1    AAAB01008980    EAA14065.4    GEZM01086731    JAV59008.1    GEZM01086739    JAV59001.1    GL763279    EFZ19968.1    KRG02886.1    GBGD01002362    JAC86527.1    KMY88468.1    AY061071    AAF52345.2    AAL28619.1    KPU73455.1    GEDC01026920    JAS10378.1    PNF25761.1    GECL01000903    JAP05221.1    KRJ97489.1    KQS70606.1    KRT03314.1    KRF98432.1    GAKP01002989    JAC55963.1    KA646735    AFP61364.1    GBHO01022864    GBHO01022862    GBRD01001588    JAG20740.1    JAG20742.1    JAG64233.1    NNAY01000441    OXU28367.1    GEDC01009006    JAS28292.1    BT126954    AEE61916.1    APGK01044138    APGK01044139    KB741020    KB631628    ENN75130.1    ERL84848.1   

Proteomes

UP000218220    UP000007151    UP000053268    UP000053240    UP000005204    UP000192223    + More
UP000005203    UP000027135    UP000242457    UP000005205    UP000235965    UP000078541    UP000279307    UP000053825    UP000007755    UP000053097    UP000078540    UP000078492    UP000015103    UP000001070    UP000268350    UP000075809    UP000001819    UP000008744    UP000037069    UP000007798    UP000095300    UP000095301    UP000009192    UP000002282    UP000000803    UP000008711    UP000192221    UP000007801    UP000007266    UP000037510    UP000069272    UP000053105    UP000002358    UP000030765    UP000076408    UP000000311    UP000008820    UP000007062    UP000075885    UP000215335    UP000019118    UP000030742   

PRIDE

Q2F5V8    H9J951    Q8IPK0    Q9VMH3   

Pfam

PF00836   Stathmin        + More
PF14769   CLAMP
PF02847   MA3

Interpro

IPR036002   Stathmin_sf        + More
IPR000956   Stathmin_fam       
IPR003891   Initiation_fac_eIF4g_MI       
IPR016024   ARM-type_fold       
IPR016021   MIF4-like_sf       
IPR003890   MIF4G-like_typ-3       
IPR032727   CLAMP       

SUPFAM

SSF101494   SSF101494        + More
SSF48371   SSF48371       

Gene 3D

1.25.40.180    

ProteinModelPortal

A0A2A4J0E4   A0A212EGU9   A0A194PYT7   A0A2H1VXT0   A0A194R606   Q2F5V8   + More
H9J951   A0A2W1BEP9   S4PK18   A0A1E1VXJ2   A0A1W4WWZ6   A0A1Y1KHH0   V9IDF7   A0A088A1N2   A0A067RVS3   A0A1Y1KFR0   A0A1W4WL04   A0A2A3EH98   A0A158NLS3   A0A310SIT1   A0A1Y1KJQ3   A0A1W4WKX0   V9ICY5   A0A2J7QB06   A0A195FVJ9   A0A3L8DK85   A0A0L7QW02   F4X2N7   A0A026WFD0   A0A195BK96   A0A195DSE9   T1HWZ9   B4JAZ6   A0A3B0K0E2   A0A151X7S8   Q29PP7   B4G6H8   A0A034WP48   A0A0L0BW58   B4MUW0   A0A1I8PKU7   T1PDG8   B4KL90   A0A1B6C4P9   B4P0N9   Q8IPK0   B3N5G1   A0A0J9TGV6   A0A1W4VBJ8   B3MKH7   A0A0T6B879   D6WP29   A0A0Q9X530   A0A0L7LQQ1   A0A1Y1KBV1   A0A1L8DCF0   A0A182F4Q3   A0A1Q3G178   A0A0M8ZXL9   K7J4A0   A0A084WG23   A0A182Y6E6   E1ZXM4   A0A1Y1KCC9   Q16KX5   V5I906   A0A2R7VST7   Q7PMA7   A0A1Y1KER4   A0A182PG49   A0A1Y1KFA6   E9IHH3   A0A0Q9X4B1   A0A069DS94   A0A0J9QWU5   Q9VMH3   A0A0P8XFB8   A0A1B6CA71   A0A2J7QAZ9   A0A1W4WVP9   A0A0V0GCW9   A0A0R1DR50   A0A0Q5WJX3   A0A0R3NQI9   A0A0Q9WQP8   A0A3F2YYC7   A0A1I8PKS0   A0A034WQC8   T1PF03   A0A0A9XUA4   A0A232FDE0   A0A1B6DRJ8   J3JUN9   N6U0T7   A0A1W4UXX9  

PDB

5Z4P     E-value=4.92238e-07,     Score=128

KEGG

692907    no KO assigned | (RefSeq) stathmin

GO

GO:0031110   GO:0016021   GO:0031594   GO:0008088   GO:0043005   GO:0015631   GO:0007298   GO:0008354   GO:0051124   GO:0007399   GO:0005875   GO:0008017   GO:0007017   GO:0005829   GO:0005737   GO:0031175   GO:0007019   GO:0051493   GO:0003723   GO:0005515   GO:0005488   GO:0043154   GO:0006508   GO:0006811   GO:0016020   GO:0003779  

PANTHER

PTHR10104  

Length:

335

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00570

outside

1  -  335

 

 

Pi

209.79451

Theta

205.946662

Tajima's D

0.254688

CLR

1.266275

CSRT

0.439678016099195

Interpretation

Uncertain