Silkworm Genome Informatics Database

Gene

KWMTBOMO01665 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006044

Annotation

PREDICTED:_pre-mRNA-splicing_factor_CWC22_homolog_[Bombyx_mori]

Location

Bomo_Chr4(-):1143824-1152989 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.289

CDS

ATGGAGAAGACTAACACCAAGCAGAAGAAAGATAAATACGAGGAAGATGATGAAAGGCGTAGGTCGAAAAGGTCGAGACGGGCTAGATCTAGATCTAAGTCACTTGAGGAACAGCAGAATAGGGAGTATAGAAGTAAACGCCGGCGTTCCAAATCACGCTCACCTCATTACAAGGCTAGGGAAGATAAACGAGTTAAAGACACACAAAAAGAGCCAGAAACAAAAAAAGATGCCTCTACAAAGCCAGAAAGACGCGCAAAAGATACTGATATGTTGAATACTAGAACAGGAGGTGCATACATTCCACCAGCAAGACTGAGGATGATGCAAGCGCAGATCACGGATAAGTCCTCGATAGCTTACCAAAGACTTGCCTGGGAAGCTCTCAAAAAGTCAATTCACGGTCACATCAACAAAATTAATGTCGGTAACATAGGTATCATTATAAAGGAATTATTGAAAGAAAACATTGTCAGAGGTCGAGGTTTGTTATGCCGTTCTGTTATTCAAGCCCAGGCAGCCTCGCCAACATTCACTAATGTATACGCGGCTCTAGTATCAGCAGTCAATTCACGTTTTCCTAATATCGGGGAGTTGTTACTGAAAAGATTAGTGATTCAATTCAAAAGAGGTTTTAAACGCAATGATAAGTCAATTTGCATTTCCTCTGCATCTTTCATTGCACATTTAGTGAATCAGAGAGTGGCACATGAAATTCTGGCTTTAGAACTTCTCACTTTACTAGTTGAATCACCAACAGATGATTCAGTTGAAGTTGCCATAGCATTCTTAAAGGAATGTGGCCAAAAATTGACTGAAGTATCATCTAAAGGTGTAAATGCAATTTTCGAGATGCTAAGGAACATTTTGCACGAAGGTCAGTTAGACAAAAGAGTTCAGTACATGATAGAAGTAATGTTCCAAGTTTGGAAGGATGGGTTCAAAGACCACCCGGCACTGATTGAAGAGTTGGAGCTCGTGCCTGAAGAAGAACAGTTCACACATCTATTGATGCTGGATGACGCTACAGATCCTCAAGATATCCTGAATGTTTTCAAATTTGATGAAAAGTATGAAGAGAATGAACAGAAGTACAAGAATCTTTGCAAGGAAATACTTGGTTCTGATGCTGAGTCCGGTGATGAAGATGGTTCAGGAGAAAGCGGTAGTGAGGAATCTGATGAAGAAGATGAAGAACAACCAAAAAAAGAAATGACTATTATTGATAACACAGAAACAAACTTAGTGGCTCTGAGACGCACTATATACCTGACAATCAACTCCAGTTTAGATTTCGAAGAATGTGCTCATAAACTAATGAAGATGCAACTGAAACCAGGACAAGAAGTGGAACTATGCCACATGTTCTTAGACTGCTGTGCTGAGCAGAGAACATATGAGAAATTCTATGGCTTATTGGCCCAAAGGTTTTGCAACATCAACAGAATATACATCGGACCTTTCGAGGAAATTTTCAAAGATTCATATTCAACAGCACACAGGTTGGACACGAATAGACTCAGAAATGTCAGCAAGTTTTTCGCCCATCTGCTGTTTACAGATTCCATTAGTTGGGAATCTTTGGAATGTGTTAAATTGAACGAAGAAGACACAACTAGTTCTAGTCGGATATACATAAAGATTCTGTTTCAAGAACTGGCTGAATACATGGGACTAAAGAAACTGAATGACCGTCTACAAGATCCGACGTTACAAGAGGCGTTTGCCGGACTGTTTCCCCGCGACAACCCGAGAAACACGCGGTTCTCTATAAACTTCTTCACGTCCATCGGACTTGGTGGACTAACTGATGAGTTACGTGAGCACCTCAAACAAATGCCCAAGAATACACCGGCGCCACCAACAGAGATCAAAATAGACAGTGACTCCAGCTCTGACTCCAGCTCGGATTCGTCTTCTTCAAGTGATTCCAGCTCAAGCGAATCTGAGGAAGAAACACAGAAAAAGAAGAAAGAAAAGAATAAAAACAAGGAAAAATCACCAGAACCAGAAAAACCCCAAGACAATAAGGTCGAGCGGTGGGGACATGAGGGGTTCTACGATACTTACGGGAGGGACGCGCGGCGACACGACCCTCGCGACCGCGGCGACGGGGGGCGGGGGGGCGCACACCGGGATACAGACCAACAAGGAAGACGTGCCAGGGACGAGAACGGGAGAGGTCTGAGAAGACGAGATGAAGATCACGAGCAAGACCCAAGAGATAGAAGAGCTCCAGAAAAGGATGACAGGAGGAATCGAAAGGAGGGTGAAAAGAGTCGTGATGGGAACAGTCGTAAAGATATTGATAGAGACAGTGAGAAAGAAAAGGATAAGAGAAGTCGAAAAGATGATGACAGAGTAACTGACAGGGAAAAGGATAAGAGACAGACCAGGAACAGTGAAGAAGATAGTAGAAGACGGGACTCTGAATACAATAGAAAAGGTGAAAAAGAGAAGGAAAAGAAACGAAAGAACGCCCGGGACGATGAACACAAAAAGGAAACATATCACAATGATGAATATTCAGCTCGAGACGAGACCGAGTCCAGGAGAACTAAGGACAAGAGAAGTAGGAATGCGGGCAGTGACGACGACAGGAAACAGAGAGGGCACAGTAGTGACGAGGGCCGCCGCGAGCGTCGCACTAGGAAAGACAAACAAAAGAGAGGCGGCAGGAGGAAGAGTGATGCTTCTGACGACGACGACGGCTGGGATATCAAATGCAGGCAGAATGCACCGAATGAGGTCTCCGGGAGCAAGTGCTATGCCGCGATGCTCGATTCTAAAAGTAACTCTGGGTCAGTGAGCTCGGCGGCTCTCAGGGACAAGGCCGCGTCGGATCCGTCTTGTGCCCCTCAGAATGTAACCGAGGCTCAGATAAAGCCACAGATCTCTGCACCCTCGTATTTTTATTCTTTGAAGGAGAACGAAGCGTTGCCGTTCAAGAGGCCCGAGAAAGAACCGCGACCAAAACTACTGCTGAATAGCGTCGTGAACGAAAACGATGTTGTGGCGATGATCGCCGCGCATGACGCGAACAGAACTGAAGGTCTGAAGAAACACATAGGTAAACTTTTAGTCGAAAAGCAAATCGTGGTCAATTATAATTTGTCAGAAAGAAAATTTGTCACGAATCTGCTGTGCGAGACGATAGACTATGCAGCCCAGCGCGACTTCTCGGCGTTTAAGCTAGCTTGTTTACTTACAACCTACGTCACTGTTCATAGTTACTTCAAGTGGTATTATTGGCAAGCCCCAGTCTCTGTTTGGATGTATTTCAAAGAACTTATGATACGGCTTACAATTGAGGTGATGAACAAATTTATTTTCAAACACTTTCTTTTCGAAGTCATATTTTCTTGA

Protein

MEKTNTKQKKDKYEEDDERRRSKRSRRARSRSKSLEEQQNREYRSKRRRSKSRSPHYKAREDKRVKDTQKEPETKKDASTKPERRAKDTDMLNTRTGGAYIPPARLRMMQAQITDKSSIAYQRLAWEALKKSIHGHINKINVGNIGIIIKELLKENIVRGRGLLCRSVIQAQAASPTFTNVYAALVSAVNSRFPNIGELLLKRLVIQFKRGFKRNDKSICISSASFIAHLVNQRVAHEILALELLTLLVESPTDDSVEVAIAFLKECGQKLTEVSSKGVNAIFEMLRNILHEGQLDKRVQYMIEVMFQVWKDGFKDHPALIEELELVPEEEQFTHLLMLDDATDPQDILNVFKFDEKYEENEQKYKNLCKEILGSDAESGDEDGSGESGSEESDEEDEEQPKKEMTIIDNTETNLVALRRTIYLTINSSLDFEECAHKLMKMQLKPGQEVELCHMFLDCCAEQRTYEKFYGLLAQRFCNINRIYIGPFEEIFKDSYSTAHRLDTNRLRNVSKFFAHLLFTDSISWESLECVKLNEEDTTSSSRIYIKILFQELAEYMGLKKLNDRLQDPTLQEAFAGLFPRDNPRNTRFSINFFTSIGLGGLTDELREHLKQMPKNTPAPPTEIKIDSDSSSDSSSDSSSSSDSSSSESEEETQKKKKEKNKNKEKSPEPEKPQDNKVERWGHEGFYDTYGRDARRHDPRDRGDGGRGGAHRDTDQQGRRARDENGRGLRRRDEDHEQDPRDRRAPEKDDRRNRKEGEKSRDGNSRKDIDRDSEKEKDKRSRKDDDRVTDREKDKRQTRNSEEDSRRRDSEYNRKGEKEKEKKRKNARDDEHKKETYHNDEYSARDETESRRTKDKRSRNAGSDDDRKQRGHSSDEGRRERRTRKDKQKRGGRRKSDASDDDDGWDIKCRQNAPNEVSGSKCYAAMLDSKSNSGSVSSAALRDKAASDPSCAPQNVTEAQIKPQISAPSYFYSLKENEALPFKRPEKEPRPKLLLNSVVNENDVVAMIAAHDANRTEGLKKHIGKLLVEKQIVVNYNLSERKFVTNLLCETIDYAAQRDFSAFKLACLLTTYVTVHSYFKWYYWQAPVSVWMYFKELMIRLTIEVMNKFIFKHFLFEVIFS

Uniprot

H9J952

Pubmed

19121390

EMBL

BABH01004417 BABH01004418 BABH01004419 BABH01004420

Proteomes

UP000005204

PRIDE

H9J952

Pfam

PF02847 MA3 + More
PF14769 CLAMP

Interpro

IPR016024   ARM-type_fold        + More
IPR003891   Initiation_fac_eIF4g_MI
IPR032727   CLAMP
IPR003890   MIF4G-like_typ-3
IPR016021   MIF4-like_sf

SUPFAM

SSF48371 SSF48371

Gene 3D

1.25.40.180

ProteinModelPortal

H9J952

PDB

6QDV E-value=7.11063e-170, Score=1537

KEGG

101735521 K13100 pre-mRNA-splicing factor CWC22 | (RefSeq) pre-mRNA-splicing factor CWC22 homolog

GO

GO:0003723 GO:0005515 GO:0005488 GO:0043154 GO:0006508 GO:0006811 GO:0016020 GO:0003779 GO:0016021

Length:

1121

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.06617

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01794

outside

1 - 1121

Pi

227.688868

Theta

187.355734

Tajima's D

0.620407

CLR

0.328581

CSRT

0.550672466376681

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics