Gene

KWMTBOMO01663  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006105

Annotation

PREDICTED:_rRNA-processing_protein_UTP23_homolog_[Amyelois_transitella]

Location

Bomo_Chr4(+):1140410-1142270      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.844 Nuclear   Reliability : 2.444

CDS

ATGAAAATAACACGTTACAAAAAAGTACAGAAATATCTAAAGTTTTATTACAACAATTATGGATTTCATCAGCCGTACCAAGTCCTTATCGATGGTACATTTTGTTTCGCTGCATTCAAAGAGCATATTAACATCAGAGAGCAAATTCCCAAGTACCTAAACAGCCAGGCTAAACTACTGACAACGAGATGTATAATTATAGAAACAGAAAAATTAGCAAAGAAAACACATGGAGCTCTCACAATATTAAAACAGTTTGGTATTCATGAATGTGGGCACAAAGAACCGGTGGCTGGATCTAAGTGCATAATGTCCATGATTGGTAAGAAGAATGAAAAGCATTATATCTTAGCTACCCAGGATCGAGATCTGCAATCCAAATTAAGGGAAAAACCTGGAGTTCCTCTGCTATATCTACATAACAAGTCACCAACATTAGAGAAACCAAGTAGTGTGAGCTTTGACAAAGCAGGTCAAGCTCTGGAAACCAATGAACATATTTTTATCACTGAGAATCAGAGTGAAACTTTGAAGCAGATGAAAAAGAAATTAGGTGTTGAAGAAAAGGTTGAAGAACTGAATGTCCCTATTAGGAAGAAAAAGCCCCATAACCCTAATCCTTTGTCTTGTAAGAAAAAGAAAAATAAACCAAGCAGACAAGGAACAAAAAAAGAAAATGTGACTGAAGGAAAAGTCCGGAAAAGGAAGAAAAATAAGTTTCCGAAGCATTTAAAAAATGAACTTAAAAGTGTTATTAGTCAGTAA

Protein

MKITRYKKVQKYLKFYYNNYGFHQPYQVLIDGTFCFAAFKEHINIREQIPKYLNSQAKLLTTRCIIIETEKLAKKTHGALTILKQFGIHECGHKEPVAGSKCIMSMIGKKNEKHYILATQDRDLQSKLREKPGVPLLYLHNKSPTLEKPSSVSFDKAGQALETNEHIFITENQSETLKQMKKKLGVEEKVEELNVPIRKKKPHNPNPLSCKKKKNKPSRQGTKKENVTEGKVRKRKKNKFPKHLKNELKSVISQ

Uniprot

A0A2A4IYG6   A0A194RBH8   A0A2H1W6A3   A0A1E1WV83   H9J9B3   A0A0L7KXH9   + More
A0A0L7KUM8   A0A2W1BCT5   A0A1B6DG47   A0A212EGU5   A0A0T6AY60   A0A232EKB1   K7INF5   A0A0P4VHJ4   R4G7R4   A0A1W4WQC1   A0A0A9WPS1   A0A0K8T081   A0A0V0GCF8   N6T502   J3JTY8   A0A067RPN8   A0A131XBY7   F4WSE9   E9HKH2   T1IRT6   A0A151X373   A0A195ESU1   A0A2P8Y797   E2AXF9   A0A195D409   A0A026W1V6   A0A195EET9   A0A1E1X4K9   A0A023GJM5   G3MLL2   A0A0P5G9S5   A0A1E1XRG1   L7M7Q7   A0A131YNQ0   A0A1B6MHJ1   A0A023FXQ9   A0A1Y1N120   A0A224Z968   E9IYH9   A0A0P5P328   A0A0P5BKM4   A0A195BQ65   A0A158NTM1   A0A131YA61   A0A0P4Y3Q4   A0A224ZB73   A0A0P5KGW7   E2BKU6   A0A0P6IJA3   B7Q827   A0A0P5XEP8   A0A0P5XUW2   K7G317   A0A0K8TM71   A0A132A1R7   A0A087ZMT9   V5H970   A0A154PGA8   A0A2R5LI14   A0A2L2YCA2   A0A336LGU9   A0A293LUE8   A0A1Z5L6I3   A0A1D1VYT5   A0A182Q744   A0A0L0C472   A0A2D0PWB9   A0A3M0L6W9   B0WE53   A0A226N5N0   U3JHY9   U5EVD5   W4YZ89   A0A1U7U5W5   A0A2I2UIZ8   G1NIM9   A0A1D5PZG8   A0A1I8N8A7   A0A182UCR8   A0A1A9UMG5   B3MKE6   A0A182ICC4   A0A182XLA0   B4LVK0  

Pubmed

26354079    19121390    26227816    28756777    22118469    28648823    + More
20075255    27129103    25401762    23537049    22516182    24845553    28049606    21719571    21292972    29403074    20798317    24508170    28503490    22216098    29209593    25576852    26830274    28004739    28797301    21282665    21347285    17381049    26369729    26555130    25765539    26561354    28528879    27649274    26108605    17975172    20838655    15592404    25315136    17994087   

EMBL

NWSH01004520    PCG64997.1    KQ460644    KPJ13256.1    ODYU01006603    SOQ48588.1    + More
GDQN01000187    JAT90867.1    BABH01004417    JTDY01004718    KOB67840.1    JTDY01005705    KOB66719.1    KZ150155    PZC72788.1    GEDC01012651    JAS24647.1    AGBW02015019    OWR40704.1    LJIG01022548    KRT79994.1    NNAY01003819    OXU18804.1    GDKW01002632    JAI53963.1    GAHY01002267    JAA75243.1    GBHO01033152    JAG10452.1    GBRD01007251    JAG58570.1    GECL01001074    JAP05050.1    APGK01052432    KB741212    KB632279    ENN72723.1    ERL91277.1    BT126698    AEE61660.1    KK852498    KDR22590.1    GEFH01004951    JAP63630.1    GL888321    EGI62866.1    GL732669    EFX67759.1    JH431385    KQ982562    KYQ54851.1    KQ981993    KYN30982.1    PYGN01000842    PSN40120.1    GL443549    EFN61883.1    KQ976881    KYN07622.1    KK107549    EZA49039.1    KQ978983    KYN26753.1    GFAC01004978    JAT94210.1    GBBM01002175    JAC33243.1    JO842763    AEO34380.1    GDIQ01245457    JAK06268.1    GFAA01001913    JAU01522.1    GACK01005846    JAA59188.1    GEDV01007663    JAP80894.1    GEBQ01004584    JAT35393.1    GBBL01001850    JAC25470.1    GEZM01016841    GEZM01016839    GEZM01016838    GEZM01016837    JAV91128.1    GFPF01013005    MAA24151.1    GL767018    EFZ14337.1    GDIQ01134493    JAL17233.1    GDIP01198204    JAJ25198.1    KQ976424    KYM88667.1    ADTU01026032    GEFM01000368    JAP75428.1    GDIP01233990    JAI89411.1    GFPF01013004    MAA24150.1    GDIQ01189665    JAK62060.1    GL448826    EFN83695.1    GDIQ01020982    JAN73755.1    ABJB010318398    DS880154    EEC14999.1    GDIP01074762    JAM28953.1    GDIP01067168    JAM36547.1    AGCU01137658    GDAI01002149    JAI15454.1    JXLN01009946    KPM04759.1    GANP01010754    JAB73714.1    KQ434899    KZC10883.1    GGLE01004929    MBY09055.1    IAAA01009983    LAA04805.1    UFQS01000004    UFQT01000004    SSW96815.1    SSX17202.1    GFWV01006678    MAA31408.1    GFJQ02004011    JAW02959.1    BDGG01000013    GAV06570.1    AXCN02000805    JRES01000934    KNC27085.1    QRBI01000104    RMC14977.1    DS231904    EDS45229.1    MCFN01000193    OXB62905.1    AGTO01020541    GANO01001926    JAB57945.1    AAGJ04151527    AANG04003518    AADN05000663    CH902620    EDV32530.1    APCN01000793    CH940649    EDW64394.1   

Proteomes

UP000218220    UP000053240    UP000005204    UP000037510    UP000007151    UP000215335    + More
UP000002358    UP000192223    UP000019118    UP000030742    UP000027135    UP000007755    UP000000305    UP000075809    UP000078541    UP000245037    UP000000311    UP000078542    UP000053097    UP000078492    UP000078540    UP000005205    UP000008237    UP000001555    UP000007267    UP000005203    UP000076502    UP000186922    UP000075886    UP000037069    UP000221080    UP000269221    UP000002320    UP000198323    UP000016665    UP000007110    UP000189704    UP000011712    UP000001645    UP000000539    UP000095301    UP000075902    UP000078200    UP000007801    UP000075840    UP000076407    UP000008792   

PRIDE

H9J9B3   

Pfam

PF04900   Fcf1        + More
PF05839   Apc13p

Interpro

IPR006984   Fcf1/Utp23        + More
IPR029060   PIN-like_dom_sf       
IPR008401   Apc13p       

SUPFAM

SSF88723   SSF88723       

ProteinModelPortal

A0A2A4IYG6   A0A194RBH8   A0A2H1W6A3   A0A1E1WV83   H9J9B3   A0A0L7KXH9   + More
A0A0L7KUM8   A0A2W1BCT5   A0A1B6DG47   A0A212EGU5   A0A0T6AY60   A0A232EKB1   K7INF5   A0A0P4VHJ4   R4G7R4   A0A1W4WQC1   A0A0A9WPS1   A0A0K8T081   A0A0V0GCF8   N6T502   J3JTY8   A0A067RPN8   A0A131XBY7   F4WSE9   E9HKH2   T1IRT6   A0A151X373   A0A195ESU1   A0A2P8Y797   E2AXF9   A0A195D409   A0A026W1V6   A0A195EET9   A0A1E1X4K9   A0A023GJM5   G3MLL2   A0A0P5G9S5   A0A1E1XRG1   L7M7Q7   A0A131YNQ0   A0A1B6MHJ1   A0A023FXQ9   A0A1Y1N120   A0A224Z968   E9IYH9   A0A0P5P328   A0A0P5BKM4   A0A195BQ65   A0A158NTM1   A0A131YA61   A0A0P4Y3Q4   A0A224ZB73   A0A0P5KGW7   E2BKU6   A0A0P6IJA3   B7Q827   A0A0P5XEP8   A0A0P5XUW2   K7G317   A0A0K8TM71   A0A132A1R7   A0A087ZMT9   V5H970   A0A154PGA8   A0A2R5LI14   A0A2L2YCA2   A0A336LGU9   A0A293LUE8   A0A1Z5L6I3   A0A1D1VYT5   A0A182Q744   A0A0L0C472   A0A2D0PWB9   A0A3M0L6W9   B0WE53   A0A226N5N0   U3JHY9   U5EVD5   W4YZ89   A0A1U7U5W5   A0A2I2UIZ8   G1NIM9   A0A1D5PZG8   A0A1I8N8A7   A0A182UCR8   A0A1A9UMG5   B3MKE6   A0A182ICC4   A0A182XLA0   B4LVK0  

PDB

4MJ7     E-value=4.62202e-16,     Score=204

KEGG

101747183    K14773 U3 small nucleolar RNA-associated protein 23 | (RefSeq) anaphase-promoting complex subunit 13

GO

GO:0032040   GO:0005680   GO:0070181   GO:0005730   GO:0048027   GO:0000480   GO:0003730   GO:0007264   GO:0043066   GO:0043154   GO:0006508   GO:0006811   GO:0016020   GO:0005515   GO:0003779   GO:0016021  

Length:

254

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.62084

Exp number, first 60 AAs:

0.62078

Total prob of N-in:

0.42314

outside

1  -  254

 

 

Pi

258.110099

Theta

193.874929

Tajima's D

0.867581

CLR

0.002506

CSRT

0.625068746562672

Interpretation

Uncertain