Silkworm Genome Informatics Database

Gene

KWMTBOMO01654

Pre Gene Modal

BGIBMGA006048

Annotation

PREDICTED:_uncharacterized_protein_LOC101746914_[Bombyx_mori]

Location

Bomo_Chr4(-):1006996-1008119 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.369 Nuclear Reliability : 2.056

CDS

ATGACTAGTCAACATAGTATCACAGACGATCGGAAGAGCATTACGCCACAGTCCCCTGCAGAATTGGAGTTTCAGTTCCCTTCGAAATACGATGACATAGAACATCCAGTATGGTGGACTCGGGACCGCCTGGTCTCCTGTTTCTACTCGCTCCCAGAAGACACCGTGTGGAACAGCTATATCTGCATCATGTCGCTCTCCGCCATTGTTTGGGTGGCGGTCGACTTCACCGGAACGCACTTGGAGATCTTGGATGCGGCTTACAACATCAGCTATGCTGTGCATGTCATGGGCCTCGGATACAATCTCTTCGCCGGAGTTGAGCGGCCCAATATCAATATTAAGATTCTGAGTTAG

Protein

MTSQHSITDDRKSITPQSPAELEFQFPSKYDDIEHPVWWTRDRLVSCFYSLPEDTVWNSYICIMSLSAIVWVAVDFTGTHLEILDAAYNISYAVHVMGLGYNLFAGVERPNINIKILS

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9J956 A0A2W1BJJ8 A0A2H1W296 A0A2A4JG60 A0A194PZM3 A0A194R6W5 + More
A0A2A4JFL8 A0A2H1W2C5 A0A212EMU7

Pubmed

19121390 28756777 26354079 22118469

EMBL

BABH01004399 KZ150105 PZC73437.1 ODYU01005870 SOQ47199.1 NWSH01001696 + More
PCG70403.1 KQ459584 KPI98488.1 KQ460644 KPJ13264.1 NWSH01001558 PCG70867.1 SOQ47198.1 AGBW02013781 OWR42830.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000007151

PRIDE

H9J956

Pfam

PF00106   adh_short        + More
PF00520   Ion_trans
PF00027   cNMP_binding
PF07885   Ion_trans_2

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR020904   Sc_DH/Rdtase_CS
IPR002347   SDR_fam
IPR000595   cNMP-bd_dom
IPR014710   RmlC-like_jellyroll
IPR018490   cNMP-bd-like
IPR005821   Ion_trans_dom
IPR013099   K_chnl_dom
IPR027359   Volt_channel_dom_sf

SUPFAM

SSF51735 SSF51735 + More
SSF51206 SSF51206

Gene 3D

2.60.120.10 1.20.120.350

CDD

cd00038 CAP_ED

ProteinModelPortal

H9J956 A0A2W1BJJ8 A0A2H1W296 A0A2A4JG60 A0A194PZM3 A0A194R6W5 + More
A0A2A4JFL8 A0A2H1W2C5 A0A212EMU7

KEGG

101746914 no KO assigned | (RefSeq) uncharacterized LOC101746914

GO

GO:0016021 GO:0016491 GO:0005216

Length:

118

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

38.40816

Exp number, first 60 AAs:

4.69797

Total prob of N-in:

0.87727

inside

1 - 55

TMhelix

56 - 73

outside

74 - 82

TMhelix

83 - 105

inside

106 - 118

Pi

55.923341

Theta

108.292676

Tajima's D

-1.444024

CLR

121.421298

CSRT

0.0701464926753662

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics