Silkworm Genome Informatics Database

Gene

KWMTBOMO01653

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_machaon]

Location

Bomo_Chr4(-):998913-1003049 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.858

CDS

ATGCCGATTGGGAAAGTTGAAAGTTTTAATATGGGATCTCAAAATTGGGACACATACATTCGTCGTGTAAAACAATTCATGGAACTCAACGACATTGAACAGAGACTTCACGTTGCAACGCTCGTGACCTTAGTTGGGTCTGAGTGCTATGACTTAATGTGTGACTTGTGTGCTCCGGACTTACCAGAAGAAAAGGATTTCGACATACTCGTAAAATTAGTCAAAGATCATCTAGAACCTGAAAGATCGGAAATAGCAGAACGTCATATCTTCAGGCAAAGAAAGCAGCAAAATAACGAAAGCATTCGTTCCTACCTACAAAGTTTGAAACATTTGGCTAAAACTTGCAATTTCGGCATCACATTAGAAATTAATCTACGCGATCAATTCGTATCAGGATTATATAGTGAGGAGATGCGATCAAGGCTGTTTGCTGAAAAAGATATAGATTACAAGCGCGCTGTTGAGTTGGCATCAGCACTGGAAGCAGCGGATCGACATGCGATGGCGGCTGGGGGCACCGGGGGCAGCTCACAGGCTGCGTCCGAGAGCGATGGCATGCATCGGGTCGGCGGAGCGCGCGCGGAGGCTCGCTGCGCCTGCAGACGCTGCGGCAAGCTGGGCCATGCGGAGGGTCGGTGTCGGTACAAGCACTACACCTGTGACTCATGTGGCGAGAAGGGACACCTAAAATCAATGTGTCGGAACCGTAAAGGTAACCAAAAGATTGAAAAAACCCGAGAAGTGTTTGCTGGAGGTTTAGGAACATGTAAATCACGCATAAAATTACATCTAAAAGAAAAGACGCCAATATTTGTAAAGGCGCGGGCGCTGCCACTGGCGTTGCGCGAGCGCGTTGAGCGAGAACTTGATCGTTTACAAAGTGAGGGAGTTATTTACAAAGTAGATAGGTCTGATTACGGCACGCCTATCGTACCAGTCGTTAAGGCAAATGGCGATATTCGTATTTGCGGCGACTATAAAATCACAATAAACCCACGTCTGAAGGATTATCACTATCCTTTGCCGCACATTAAAGATTTGTTTGCCACTTTAGGTGGTGGTGAATATTACACAAAATTGGATTTATCTAATGCATTCCAGCAATGCCTCTTAGACGAAGAATCCCAGCCGATGACAGCGATCACGACACACGTTGGTACTTTTGTCTACAAGCGCGTTCCGTTTGGAATTAAATGCATTCCGGAAAACTTTCAGAAGATTATGGAAGAGATTCTAAGTGTACTTTCTGTTGACAGCAGCCAGTACGGACTGGGCGCCGTCCTCACTCAGAAGCACATCGACGGCACTGAGCGGCTCGTCAGCTGTGCCTCACGGACTCTGGCGCCAGCCGAACTTAACTATTCTCAGCTGGACAAAGAAGCTTTGGCTATAATGTTTGGGGTTACTAAACACCATCAGTATTTGTACGGTAGACATTTTGTTTTACGAAGCGATCATAAGGCTCTGAGTTATATTCTTGGAAAGAATAAAGGTATACCTCTAACCGCCGCGAGTCGTCTGCAACGATTTGCTGTAAAGCTAGCTGCGTATGATTTTGAGGTCGAATTTATTAGTTCTACAGATAATTGCCAGGCTGACGCGCTATCACGACTTCCACTGGATACTAATTTTAAGAATAATATTAAGGAGTATAATTACCTAAACTTCGTTCAAGAAAGCTTTCCACTCAGTTTTAAAGAAATTAAAAAGGAAGTTACGAAGGATCCTTTACTAAACAAAATTTACGGTTACGTCATGTTTGGCTGGCCCTCTGTCAGTAAAGAACAAGCAGAAAAACCCTATTTTAACAGAAGAGAATCCATACATATTGATCACGGTTGTCTTCTATGGGGTTACAGAATAATAATTCCAACTTCATTGCGAGAGACTGTGTTACAGGAGTTACATGAGGGACATCCGGGTATTGTTAAGATGAAACAATTAAGTCGGAACTATGTATGGTGGGAGACAGTCGATGCGGACATTGAACGTGTATGTGCTCAGTGCCAGGCCTGTCGGTCTCAGCGCGCTGCACCACCATCGGTGCCGCTGCACTCATGGCCATGGCCGGAAGAGCCGTGGGCGCGCCTTAATCTTGATTTCTTGGGACCGTTTAATAACAAATATTACTTAATTATAGTTGACGCTCATTCAAAATGGATTGAGGTGGAAAAATTGAGCGGTACATCAGCCACGGCAGTAATCGCTTGTCTCAGACGATTGTTTGCTCGATTTGGCTTAGCAAAAAGGGTAGTAACTGATAACGGACCACCTTTCTCGTCGGTCGAATTTAGATCATATTTAAGTAAAAACGGTATAAAACATTTAGCGGTGGCTCCGTATCATCCATCTAGCAATGGTGCAGCGGAAAACGCCGTAAAAACCATAAAAAGGGTGTTGAAAAAGGCTCTAATTGAAAAGGAAGACGACAATACCGCCTTGACAAAATTTCTCTTTATGTACAGAAATTCTGAGCATAGCACTACAGGGCGCGAACCAGCAGTTGCTTTGTTCGGACGTCGCCTGCGTGGAAGACTGGATCTGTTGCGTCCCAATACCAGCTCCATAGTACGAGAAGCACAGCTGGCAAGCGAAAGCTATAATGCAGGCACAGCCGGATATAGGGAGGCTGCAGAAGGAGACTCGGTCCTATTGCAAGATTTCACACAGGGAAAAAAGAAATGGACCACAGGAACAATAAAAAATCGATCAGGTCCGGTGACATACAGGGTAACAGCAGATGACGGGCGGGTACACAAACGTCACATCGACCAGATTTTAATAAGTAATAATAGTCGAAAATCACGTTATTCTTTGTCAAAATTAAACACTGATTTCGAGACAAAATCAGTAAATGATAGTGTGGGTGAAGTTCGGGAAAGTCCGTGTATGACCGGAGAAAAGGAGCTCAACTCCAGCTATGACACGGGACCGGAAAGTCCACAACCTGTGACTTCTAGGCACTCGCCGGCGCCGAATGTCTTGCAACCATCGCGTCAGCGCCGTAAAGCTGCTTTAACGTGTATTCAGAGAATTAAGGACCAAAATTACTAA

Protein

MPIGKVESFNMGSQNWDTYIRRVKQFMELNDIEQRLHVATLVTLVGSECYDLMCDLCAPDLPEEKDFDILVKLVKDHLEPERSEIAERHIFRQRKQQNNESIRSYLQSLKHLAKTCNFGITLEINLRDQFVSGLYSEEMRSRLFAEKDIDYKRAVELASALEAADRHAMAAGGTGGSSQAASESDGMHRVGGARAEARCACRRCGKLGHAEGRCRYKHYTCDSCGEKGHLKSMCRNRKGNQKIEKTREVFAGGLGTCKSRIKLHLKEKTPIFVKARALPLALRERVERELDRLQSEGVIYKVDRSDYGTPIVPVVKANGDIRICGDYKITINPRLKDYHYPLPHIKDLFATLGGGEYYTKLDLSNAFQQCLLDEESQPMTAITTHVGTFVYKRVPFGIKCIPENFQKIMEEILSVLSVDSSQYGLGAVLTQKHIDGTERLVSCASRTLAPAELNYSQLDKEALAIMFGVTKHHQYLYGRHFVLRSDHKALSYILGKNKGIPLTAASRLQRFAVKLAAYDFEVEFISSTDNCQADALSRLPLDTNFKNNIKEYNYLNFVQESFPLSFKEIKKEVTKDPLLNKIYGYVMFGWPSVSKEQAEKPYFNRRESIHIDHGCLLWGYRIIIPTSLRETVLQELHEGHPGIVKMKQLSRNYVWWETVDADIERVCAQCQACRSQRAAPPSVPLHSWPWPEEPWARLNLDFLGPFNNKYYLIIVDAHSKWIEVEKLSGTSATAVIACLRRLFARFGLAKRVVTDNGPPFSSVEFRSYLSKNGIKHLAVAPYHPSSNGAAENAVKTIKRVLKKALIEKEDDNTALTKFLFMYRNSEHSTTGREPAVALFGRRLRGRLDLLRPNTSSIVREAQLASESYNAGTAGYREAAEGDSVLLQDFTQGKKKWTTGTIKNRSGPVTYRVTADDGRVHKRHIDQILISNNSRKSRYSLSKLNTDFETKSVNDSVGEVRESPCMTGEKELNSSYDTGPESPQPVTSRHSPAPNVLQPSRQRRKAALTCIQRIKDQNY

Uniprot

J9LQK2

EMBL

ABLF02008637

Proteomes

UP000007819

Pfam

PF17921   Integrase_H2C2        + More
PF00665   rve
PF00078   RVT_1

Interpro

IPR001995   Peptidase_A2_cat        + More
IPR001584   Integrase_cat-core
IPR012337   RNaseH-like_sf
IPR021109   Peptidase_aspartic_dom_sf
IPR000477   RT_dom
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2

SUPFAM

SSF50630 SSF50630 + More
SSF53098 SSF53098

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

J9LQK2

PDB

4OL8 E-value=3.23272e-12, Score=177

KEGG

NA

GO

GO:0003676 GO:0004190 GO:0015074 GO:0008270 GO:0006508 GO:0006811 GO:0016020 GO:0005515 GO:0003779 GO:0016021

Length:

1018

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00112

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.00002

outside

1 - 1018

Pi

418.220453

Theta

209.850443

Tajima's D

3.4369

CLR

0.348503

CSRT

0.993250337483126

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree