SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01652
Pre Gene Modal
BGIBMGA006050
Annotation
PREDICTED:_uncharacterized_protein_LOC101746914_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.957
 

Sequence

CDS
ATGAATAACCAACGATTAGGAAACCTTAATTTTCAGACTAGAATTCTGCGGGATCTTTCAAATCAGTTCCTGTCTGAGTTAGCTAAGAAGACGGAAACGATACATTATATTCCCGGTGATGCTATCATCAAGAGATCCTCAAAGAAGTCTTCCATCATTTACATCACTTATGGAGATGTTGAGCGGTTAAAATCGCACAGCACGATCCGACAGATGGTTACGGCGGAGGACGACAGCACGGCCGTGCTCCGCATGACGCGCGGCACCGTGCTGGGCCCGTGCGCGCTGTGCGTGCCCGCCCCGCTCGAGGTGCGCGCCGCCACCTTCTGCACCGCGCACGTGCTCAGCGTCGCCGACCTGTGGAGGACGGCGGCCAAGTACGGCCGGACCGACGAGCAGACGACGATCCTGTGGGCCGCAGTTAAGACACACCCGTACTACTTGGTATTCAAGAAGACGGTCCCGTTGGAGTTTAGGTTCTTCGACTACGTGATCTCAATTATATATGCGCTGGACATAGTGGTGCATCTCTCCACCGGAGCCAACGTAGAGGAAGGAGTTCCAATAACATTCTCGCAAACGTCCTCGCAGCATATGAGGAGTCGTTGGTTTGTCCTCGACGTCGTTGGGACTGTGCCGATCTTCGAATTCATTGGTGAAGGTTATTTCGCCGGAATGAATAAGCTGTTGAGGCTGCCTAAGGTGTTCCGAATACTGAAGAGAATTGAGGAGACGTGCGTGTACCGAAGCAATGTGTTAAGATTCCTCTCGTACACCCTCCTGCTGGTGATCGCCTGCTACATGATCACGGCGCTGCAGCAGGCCTTCATGTGCTTCCAGTGCGTGTCTTAG
Protein
MNNQRLGNLNFQTRILRDLSNQFLSELAKKTETIHYIPGDAIIKRSSKKSSIIYITYGDVERLKSHSTIRQMVTAEDDSTAVLRMTRGTVLGPCALCVPAPLEVRAATFCTAHVLSVADLWRTAAKYGRTDEQTTILWAAVKTHPYYLVFKKTVPLEFRFFDYVISIIYALDIVVHLSTGANVEEGVPITFSQTSSQHMRSRWFVLDVVGTVPIFEFIGEGYFAGMNKLLRLPKVFRILKRIEETCVYRSNVLRFLSYTLLLVIACYMITALQQAFMCFQCVS

Summary

Pfam
PF00520   Ion_trans        + More
PF00027   cNMP_binding
Interpro
IPR005821   Ion_trans_dom        + More
IPR000595   cNMP-bd_dom       
IPR014710   RmlC-like_jellyroll       
IPR018490   cNMP-bd-like       
SUPFAM
SSF51206   SSF51206       
Gene 3D
ProteinModelPortal
PDB
5VA3     E-value=0.000337614,     Score=102

Ontologies

Topology

Length:
283
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
55.21736
Exp number, first 60 AAs:
0
Total prob of N-in:
0.75129
inside
1  -  254
TMhelix
255  -  277
outside
278  -  283
 
 

Population Genetic Test Statistics

Pi
261.221668
Theta
242.637808
Tajima's D
0.274199
CLR
0.214273
CSRT
0.445727713614319
Interpretation
Uncertain
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