Gene

KWMTBOMO01624  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006072

Annotation

PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_4-like_[Bombyx_mori]

Location

Bomo_Chr4(-):485495-489531      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.281

CDS

ATGTCGCTTAGTTTATTACTTGAGAAATATGATGTATCAACAGAAGAGGGCTTACAAAAAGCGTTAAGCGAAGTTGAAAAAGAAGAATCAGAAGTAGATGAAGCATTATCTGGAGTGCTATCGCGTGCTTGCATGCTAGAAGACAAGCTCCGCACAGCCAGTCAAGCTTACACTAAGCTCAGTGAAGTGAAAGCTGATGCACAAGTTGCTGCAGACATGGTGGACAGAACTGCAGAATTAGCCAGAGATGTCAGTGCTAAAGTCAGACAACTCGATTTGGCTAGATCTAGAGTGGCAGAATGTCAGAGGAGAGTGCATGATCTTATTGATCTGCAGCTATGCAGCGCAGGAGTTGAAGCTGCCATAAAAGCTAATGATTATGAGACCGGTGCTGGACACGTGTCGAGATTCCTAAGCATGGATCCAGGTTCAGTAGCGGCAGCGCGGGCTCGCGGAGCCGCCGACCCACGGGACGCAATGACGCGCGCCGCCAACACACTCAGAGAACATATCGTTCGTAGGTTTGAAGATGCCGCTCAGAAAAACGATGACGAGAACGTAGATAAGCTTTTCAAGCTGTTTCCTCAGATCGGACGCGCCGAGGAAGGAGTCCGGCTGCTGGCCAAGTACCTGGCCACCAAGTTGGGGGTGGAGATCCGTCGGCTGAGCGTGGTGGCGGAGGGCGAGGGCGCCGTGTTCGCCGACGCCATGACGCGCGTGCTGGAGGCCGCCGCCGCCGCCGCCGCGCGCGCCGCCGCCCTCGCCGCCCTCGCCGCGCCCGGCCTGCTGCCCGCCGCGCTCGCCGCCCTGCAGCCGCAGGTCCGTCTCACCTTCACTTCATTATATACACTTTTTATGGTGAAGGGAAAAAATCAAGAAATCGCATGA

Protein

MSLSLLLEKYDVSTEEGLQKALSEVEKEESEVDEALSGVLSRACMLEDKLRTASQAYTKLSEVKADAQVAADMVDRTAELARDVSAKVRQLDLARSRVAECQRRVHDLIDLQLCSAGVEAAIKANDYETGAGHVSRFLSMDPGSVAAARARGAADPRDAMTRAANTLREHIVRRFEDAAQKNDDENVDKLFKLFPQIGRAEEGVRLLAKYLATKLGVEIRRLSVVAEGEGAVFADAMTRVLEAAAAAAARAAALAALAAPGLLPAALAALQPQVRLTFTSLYTLFMVKGKNQEIA

Uniprot

H9J980   A0A2W1BVJ5   A0A2A4K8J4   A0A2H1VH18   S4PSG0   A0A194Q0D8   + More
A0A194RBL9   A0A212F7W5   U5EZ33   A0A182JSD8   A0A1S4GZG6   A0A182U1B3   Q5TNE6   A0A182VEV9   A0A182RUR1   A0A182SI44   A0A182XDD6   A0A182LMZ7   A0A182H6I8   A0A182VU97   A0A182P685   A0A182Y942   A0A1B0C0R4   A0A1B0FCV5   A0A182M436   A0A1A9YH38   Q16TS8   A0A1A9VI52   A0A1A9ZEX6   A0A182I766   A0A1A9WLY3   B0WBZ5   A0A084VYM5   B4LVB3   A0A182F5R5   A0A2M4APT9   A0A1I8P8E2   A0A1B6E410   B4JQ08   A0A336KIL1   A0A088A322   A0A182IKX9   A0A067R0K6   A0A182QER7   W5J1S1   B4KHQ6   A0A1B6DE98   A0A154P3H1   A0A0C9PZX8   A0A195EFP0   A0A0L7QXE7   A0A151WJK3   E9IBA8   A0A2J7PPJ7   A0A0M9A9M2   A0A2J7PPG1   A0A310SQB6   A0A2J7PPI9   A0A158NI43   A0A195B651   A0A026WSF9   A0A1L8DVE8   A0A182NGK8   A0A0J7P510   F4WGD4   E2BV79   A0A195EZM1   A0A1B6GDQ7   W8CBU5   A0A0R3NW10   A0A0M5J668   A0A1B0GIM2   A0A3B0JHN3   A0A195CP06   A0A1B6LM77   A0A1J1I1I0   A0A1I8MWB7   B4MUA5   B3MJJ3   A0A0P5YEW4   A0A0P6EHI8   A0A0P5BBP6   A0A0P5B8U0   A0A0P4Y3D0   E9FQQ8   A0A0P5LU46   A0A0N7ZH79   A0A0P6I8Q9   A0A0P5RJU6   A0A0P5DTD5   A0A0K8V4A8   A0A1W4UT09   A0A0A1WXE4  

Pubmed

19121390    28756777    23622113    26354079    22118469    12364791    + More
14747013    17210077    20966253    26483478    25244985    17510324    24438588    17994087    24845553    20920257    23761445    21282665    21347285    24508170    30249741    21719571    20798317    24495485    15632085    25315136    21292972    25830018   

EMBL

BABH01004345    BABH01004346    KZ149934    PZC77217.1    NWSH01000047    PCG80238.1    + More
ODYU01002281    SOQ39554.1    GAIX01013853    JAA78707.1    KQ459584    KPI98459.1    KQ460644    KPJ13296.1    AGBW02009824    OWR49834.1    GANO01001515    JAB58356.1    AAAB01008984    EAL38955.3    JXUM01114158    KQ565759    KXJ70693.1    JXJN01023734    CCAG010017495    AXCM01000336    CH477641    EAT37914.1    APCN01003368    DS231884    EDS43055.1    ATLV01018379    KE525231    KFB43069.1    CH940649    EDW63292.2    GGFK01009484    MBW42805.1    GEDC01004650    JAS32648.1    CH916372    EDV98988.1    UFQS01000186    UFQT01000186    SSX00900.1    SSX21280.1    KK853129    KDR10987.1    AXCN02002086    ADMH02002160    ETN58187.1    CH933807    EDW13343.2    GEDC01013270    JAS24028.1    KQ434809    KZC06397.1    GBYB01007118    GBYB01011682    JAG76885.1    JAG81449.1    KQ978957    KYN27090.1    KQ414704    KOC63292.1    KQ983039    KYQ48011.1    GL762111    EFZ22111.1    NEVH01022696    PNF18229.1    KQ435719    KOX78763.1    PNF18230.1    KQ761039    OAD58347.1    PNF18231.1    ADTU01016268    KQ976579    KYM79993.1    KK107111    QOIP01000011    EZA58967.1    RLU17155.1    GFDF01003684    JAV10400.1    LBMM01000092    KMR04999.1    GL888128    EGI66901.1    GL450824    EFN80371.1    KQ981897    KYN33750.1    GECZ01009212    JAS60557.1    GAMC01004511    JAC02045.1    CH475452    KRT05329.1    CP012523    ALC39286.1    AJWK01015079    AJWK01015080    OUUW01000006    SPP81705.1    KQ977481    KYN02446.1    GEBQ01015127    GEBQ01002337    JAT24850.1    JAT37640.1    CVRI01000038    CRK94184.1    CH963857    EDW76031.1    CH902620    EDV32361.1    GDIP01072795    GDIQ01037812    JAM30920.1    JAN56925.1    GDIQ01069347    JAN25390.1    GDIP01190986    JAJ32416.1    GDIP01188434    JAJ34968.1    GDIP01233272    JAI90129.1    GL732523    EFX90030.1    GDIQ01165560    JAK86165.1    GDIP01245705    JAI77696.1    GDIQ01009669    JAN85068.1    GDIQ01101482    JAL50244.1    GDIP01151535    JAJ71867.1    GDHF01018894    JAI33420.1    GBXI01011199    JAD03093.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000075881    + More
UP000007062    UP000075902    UP000075903    UP000075900    UP000075901    UP000076407    UP000075882    UP000069940    UP000249989    UP000075920    UP000075885    UP000076408    UP000092460    UP000092444    UP000075883    UP000092443    UP000008820    UP000078200    UP000092445    UP000075840    UP000091820    UP000002320    UP000030765    UP000008792    UP000069272    UP000095300    UP000001070    UP000005203    UP000075880    UP000027135    UP000075886    UP000000673    UP000009192    UP000076502    UP000078492    UP000053825    UP000075809    UP000235965    UP000053105    UP000005205    UP000078540    UP000053097    UP000279307    UP000075884    UP000036403    UP000007755    UP000008237    UP000078541    UP000001819    UP000092553    UP000092461    UP000268350    UP000078542    UP000183832    UP000095301    UP000007798    UP000007801    UP000000305    UP000192221   

PRIDE

H9J980   

Pfam

PF08318   COG4        + More
PF07393   Sec10
PF00867   XPG_I
PF04437   RINT1_TIP1

Interpro

IPR013167   COG_su4        + More
IPR009976   Sec10-like       
IPR036279   5-3_exonuclease_C_sf       
IPR006086   XPG-I_dom       
IPR029060   PIN-like_dom_sf       
IPR006084   XPG/Rad2       
IPR007528   RINT1_Tip20       

SUPFAM

SSF88723   SSF88723        + More
SSF47807   SSF47807       

ProteinModelPortal

H9J980   A0A2W1BVJ5   A0A2A4K8J4   A0A2H1VH18   S4PSG0   A0A194Q0D8   + More
A0A194RBL9   A0A212F7W5   U5EZ33   A0A182JSD8   A0A1S4GZG6   A0A182U1B3   Q5TNE6   A0A182VEV9   A0A182RUR1   A0A182SI44   A0A182XDD6   A0A182LMZ7   A0A182H6I8   A0A182VU97   A0A182P685   A0A182Y942   A0A1B0C0R4   A0A1B0FCV5   A0A182M436   A0A1A9YH38   Q16TS8   A0A1A9VI52   A0A1A9ZEX6   A0A182I766   A0A1A9WLY3   B0WBZ5   A0A084VYM5   B4LVB3   A0A182F5R5   A0A2M4APT9   A0A1I8P8E2   A0A1B6E410   B4JQ08   A0A336KIL1   A0A088A322   A0A182IKX9   A0A067R0K6   A0A182QER7   W5J1S1   B4KHQ6   A0A1B6DE98   A0A154P3H1   A0A0C9PZX8   A0A195EFP0   A0A0L7QXE7   A0A151WJK3   E9IBA8   A0A2J7PPJ7   A0A0M9A9M2   A0A2J7PPG1   A0A310SQB6   A0A2J7PPI9   A0A158NI43   A0A195B651   A0A026WSF9   A0A1L8DVE8   A0A182NGK8   A0A0J7P510   F4WGD4   E2BV79   A0A195EZM1   A0A1B6GDQ7   W8CBU5   A0A0R3NW10   A0A0M5J668   A0A1B0GIM2   A0A3B0JHN3   A0A195CP06   A0A1B6LM77   A0A1J1I1I0   A0A1I8MWB7   B4MUA5   B3MJJ3   A0A0P5YEW4   A0A0P6EHI8   A0A0P5BBP6   A0A0P5B8U0   A0A0P4Y3D0   E9FQQ8   A0A0P5LU46   A0A0N7ZH79   A0A0P6I8Q9   A0A0P5RJU6   A0A0P5DTD5   A0A0K8V4A8   A0A1W4UT09   A0A0A1WXE4  

KEGG

101745046    K20291 conserved oligomeric Golgi complex subunit 4 | (RefSeq) conserved oligomeric Golgi complex su

GO

GO:0017119   GO:0048213   GO:0006890   GO:0007030   GO:0048278   GO:0006887   GO:0005737   GO:0004518   GO:0006281   GO:0005783  

Length:

295

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.90174

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03197

outside

1  -  295

 

 

Pi

145.652479

Theta

169.572354

Tajima's D

-0.807505

CLR

0.208409

CSRT

0.173341332933353

Interpretation

Possibly Positive selection