Gene

KWMTBOMO01606  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006085

Annotation

PREDICTED:_nucleolar_protein_58_[Amyelois_transitella]

Location

Bomo_Chr4(+):19486-23471      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.974 Nuclear   Reliability : 1.59

CDS

ATGTTGGTTCTATTCGAGACACCGGCGGGCTATGCCATATTTAAGTTGCTGGATGAGTCTAAGCTGAGTGAGATTGACAACTTGTACCAAGAATTTAACACTCCAGAAGGGGCTTCCACAGTGGTTAAGTTAAAGAACTTTGTAAAGTTTGAGGACACAACAGAAGCTTTGGCAGCCACTACTGCAGCTATTGAGGGCAAGATATCTAAGCCCCTAAAGAAAGCTCTTAAGAAGTATGTTTGTAAAGAGGTTCAGGATCAACTCCTTGTCGGTGACTCTAAGCTGGGAAGTGCCATTAGAGAAAAATTTGACTTACAATGTGTATCAAATACTAATGTCCAGGAACTGCTCCGGTGTATTCGCTCACAGATGGACAGTCTCCTAGCTGGACTTCCTAAAAAAGAAATGACAGCTATGGCTTTGGGCCTGGCTCACTCTCTTTCGAGGTACAAATTAAAGTTCTCTCCTGACAAAATAGACACTATGATTGTTCAAGCTCAGTGTTTGCTTGATGATCTTGACAAGGAATTAAACAACTACATCATGAGGTGCCGTGAATGGTATGGTTGGCATTTCCCAGAGCTTGGGAAAATCATCACTGATAACACTTTGTTTGTAAAAGTGGTAAAACTCATTGGCACACGAGACTATGCATCCAAGACTGATTTATCTGACATTTTACCTGAAGACTTAGAAGAGAAAGTTAAGGAAGCAGCTGAGATCTCCATGGGAACTGAAATATCTGAAGACGACATTATGAACATACAGAATCTGTGTGATGAGATTATTTCCATCACAGACTACAGGACTCATTTAACAGACTACTTGAAGGCGCGTATGATGGCAATGGCACCAAACCTCACTGTACTCATTGGTGAACACATTGGAGCACGACTTATTGCTCATGCAGGCTCACTAATGAATTTGGCAAAACATCCTGCTTCTACAATACAGATTTTTGGTGCAGAAAAAGCTCTTTTCCGTGCCTTAAAAACGAAGAAAGACACACCAAAGTATGGATTGATATATCACGCTCAGTTAGTGGGCCAGTGCAGTACAAAAAACAAAGGTAAAATGTCAAGAATGTTGGCTGCTAAGGCAGCACTTGCGACTAGAGTTGATGCATTTGGAGAAGATGTGTCTTTTGAGCTCGGAGCTGAACATAAAGTGAAATTAGAGAACCGCCTGCGACTACTGGAAGAAGGAAACCTGCGTAGGATTAGTGGAACAGGGAAAGCAAAAATCAAATTTGAGAAATATCACAGTAAAAGTGAAGTCTATCAATATCCTGATGCAAGTGATAACACAATTGACAAGAAGCCGATCAAGCGAGAACACTCTCCAGATGAAGACCAAGTGTCAGCCAAAAAGATAAAACTAGAGAATGATGTGTCACTTAAAAATATAAAAACTGAAAACGAAGAACCGGCAGAAGACGCGCTCCCAGAACCCAGCTCTGAAAAGAAGAAAAAGAAGAAACGGAAATCAGAAGTAAAAACTGAACCAGAACCAGAACCCGAGGTCTCACTTGAAGAACCCAAGAGTGAAAAAAAGAAGAAAAAGAAGCGGCAGTCTCAGGCCGATGAATAG

Protein

MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDTTEALAATTAAIEGKISKPLKKALKKYVCKEVQDQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRCREWYGWHFPELGKIITDNTLFVKVVKLIGTRDYASKTDLSDILPEDLEEKVKEAAEISMGTEISEDDIMNIQNLCDEIISITDYRTHLTDYLKARMMAMAPNLTVLIGEHIGARLIAHAGSLMNLAKHPASTIQIFGAEKALFRALKTKKDTPKYGLIYHAQLVGQCSTKNKGKMSRMLAAKAALATRVDAFGEDVSFELGAEHKVKLENRLRLLEEGNLRRISGTGKAKIKFEKYHSKSEVYQYPDASDNTIDKKPIKREHSPDEDQVSAKKIKLENDVSLKNIKTENEEPAEDALPEPSSEKKKKKKRKSEVKTEPEPEPEVSLEEPKSEKKKKKKRQSQADE

Uniprot

H9J993   A0A2H1X0C1   A0A2A4JKJ4   A0A2W1BVK5   A0A194Q0C8   A0A194R708   + More
S4P206   A0A212FGN2   A0A1E1WCL6   A0A0L7LG86   A0A087ZZZ5   A0A2A3E580   A0A154PKI1   B4HXZ8   B4N068   D6WGW9   A0ANZ0   A0A1W4X4X6   A0ANY9   B4Q595   Q9U5W4   A0A1W4UQ94   Q9VM69   A0A0L7R3J5   B3MKR6   B4NZZ2   V5H0A7   B5DK75   B3N662   B4LRP1   A0A1L8DHH6   A0A1L8DH61   B4GKZ4   A0A1L8DHE6   A0A1I8QEY6   A0A1A9V9M1   A0A3B0KD38   A0A1Q3F065   A0A1Y1MP76   D3TND0   A0A067RI98   B0X5E5   A0A0C9QIS7   A0A1A9W031   A0A0M4E4A3   A0A1B0A509   B4JQL6   A0A0L0BQJ7   A0A1A9XGV6   A0A1B0BJH4   A0A336LXS0   B4KJW5   A0A2P8XVX0   A0A0N0U576   A0A1B0FF83   U5EYK2   A0A1I8MP78   A0A1J1I5D9   A0A1B6FBC6   A0A182RFT9   A0A0M9A283   W8BSS4   A0A1B6L2R7   A0A1B6HPN4   K7ILS5   A0A2M4BJ71   A0A2M4BJE9   A0A2M4BJ45   A0A2M4BJ39   A0A0K8UHY0   A0A182FQN3   A0A2M4BJC8   A0A034VYR3   A0A182TDW1   A0A0A1WU25   A0A2M4ADG7   A0A2M4AD97   A0A182VCD0   Q7QK65   A0A0P5P451   A0A182MG25   A0A0N8AK20   A0A182QC14   A0A182LQQ0   A0A0P6GUL0   A0A0P5D0G8   A0A0P4WWJ6   A0A2M3Z4S2   A0A2M3Z4E5   A0A0N8C939   A0A0P5BB74   A0A0P4YCA3   A0A0P4WYQ8   A0A0P5D1V1   A0A0P5QYW7   A0A0P5P4L3   W5J4V6   A0A0P5TSS0   A0A0P5FL43   A0A0P5DS21  

Pubmed

19121390    28756777    26354079    23622113    22118469    26227816    + More
17994087    18362917    19820115    16951084    22936249    19126864    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    15632085    28004739    20353571    24845553    26108605    29403074    25315136    24495485    20075255    25348373    25830018    12364791    14747013    17210077    20966253    20920257    23761445   

EMBL

BABH01004300    ODYU01012473    SOQ58800.1    NWSH01001259    PCG71953.1    KZ149934    + More
PZC77227.1    KQ459584    KPI98449.1    KQ460644    KPJ13304.1    GAIX01012235    JAA80325.1    AGBW02008633    OWR52895.1    GDQN01006331    JAT84723.1    JTDY01001244    KOB74420.1    KZ288387    PBC26416.1    KQ434946    KZC12356.1    CH480818    EDW51928.1    CH963920    EDW78003.1    KQ971321    EFA00147.1    AM294378    CAL26308.1    AM294377    CAL26307.1    CM000361    CM002910    EDX04028.1    KMY88647.1    AJ249465    AM294373    AM294374    AM294375    AM294376    AM294379    AM294380    FM245446    FM245447    FM245449    FM245450    FM245451    FM245452    FM245454    CAB60723.1    CAL26303.1    CAL26304.1    CAL26305.1    CAL26306.1    CAL26309.1    CAL26310.1    CAR93372.1    CAR93373.1    CAR93375.1    CAR93376.1    CAR93377.1    CAR93378.1    CAR93380.1    AE014134    AY061401    FM245448    FM245453    AAF52455.2    AAL28949.1    CAR93374.1    CAR93379.1    KQ414663    KOC65399.1    CH902620    EDV31597.1    CM000157    EDW87819.1    GALX01002208    JAB66258.1    CH379062    EDY70701.1    CH954177    EDV59149.1    CH940649    EDW64643.1    GFDF01008290    JAV05794.1    GFDF01008323    JAV05761.1    CH479184    EDW37310.1    GFDF01008289    JAV05795.1    OUUW01000006    SPP81558.1    GFDL01014090    JAV20955.1    GEZM01025389    JAV87479.1    EZ422932    ADD19208.1    KK852458    KDR23571.1    DS232376    EDS40830.1    GBYB01003434    JAG73201.1    CP012523    ALC38646.1    CH916372    EDV99196.1    JRES01001511    KNC22355.1    JXJN01015395    UFQT01000283    SSX22764.1    CH933807    EDW12568.1    PYGN01001265    PSN36152.1    KQ435789    KOX74452.1    CCAG010014241    GANO01000304    JAB59567.1    CVRI01000040    CRK94804.1    GECZ01022262    JAS47507.1    KOX74453.1    GAMC01004349    GAMC01004348    JAC02208.1    GEBQ01022046    JAT17931.1    GECU01031058    JAS76648.1    GGFJ01003941    MBW53082.1    GGFJ01003940    MBW53081.1    GGFJ01003939    MBW53080.1    GGFJ01003945    MBW53086.1    GDHF01026148    JAI26166.1    GGFJ01003942    MBW53083.1    GAKP01011922    GAKP01011920    JAC47030.1    GBXI01011980    JAD02312.1    GGFK01005441    MBW38762.1    GGFK01005428    MBW38749.1    AAAB01008799    EAA03754.5    GDIQ01138290    JAL13436.1    AXCM01003899    GDIQ01268099    JAJ83625.1    AXCN02001550    GDIQ01041325    JAN53412.1    GDIP01164574    JAJ58828.1    GDIP01251532    JAI71869.1    GGFM01002766    MBW23517.1    GGFM01002641    MBW23392.1    GDIP01251531    GDIQ01177213    GDIQ01175260    GDIQ01102747    LRGB01002384    JAI71870.1    JAL48979.1    KZS07929.1    GDIP01191232    GDIP01092294    JAJ32170.1    GDIP01229531    JAI93870.1    GDIP01251530    JAI71871.1    GDIP01167616    JAJ55786.1    GDIQ01110342    JAL41384.1    GDIQ01133789    JAL17937.1    ADMH02002134    ETN58428.1    GDIP01122086    JAL81628.1    GDIQ01252956    JAJ98768.1    GDIP01158327    JAJ65075.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000005203    UP000242457    UP000076502    UP000001292    UP000007798    UP000007266    UP000192223    UP000000304    UP000192221    UP000000803    UP000053825    UP000007801    UP000002282    UP000001819    UP000008711    UP000008792    UP000008744    UP000095300    UP000078200    UP000268350    UP000027135    UP000002320    UP000091820    UP000092553    UP000092445    UP000001070    UP000037069    UP000092443    UP000092460    UP000009192    UP000245037    UP000053105    UP000092444    UP000095301    UP000183832    UP000075900    UP000002358    UP000069272    UP000075902    UP000075903    UP000007062    UP000075883    UP000075886    UP000075882    UP000076858    UP000000673   

PRIDE

H9J993    A0ANZ0    A0ANY9    Q9U5W4    Q9VM69   

Pfam

PF08156   NOP5NT        + More
PF01798   Nop
PF00076   RRM_1
PF01873   eIF-5_eIF-2B

Interpro

IPR029012   Helix_hairpin_bin_sf        + More
IPR012976   NOSIC       
IPR036070   Nop_dom_sf       
IPR002687   Nop_dom       
IPR012974   NOP5_N       
IPR042239   Nop_C       
IPR027417   P-loop_NTPase       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR007694   DNA_helicase_DnaB-like_C       
IPR003593   AAA+_ATPase       
IPR035979   RBD_domain_sf       
IPR016190   Transl_init_fac_IF2/IF5_Zn-bd       
IPR016189   Transl_init_fac_IF2/IF5_N       
IPR002735   Transl_init_fac_IF2/IF5       

SUPFAM

SSF89124   SSF89124        + More
SSF54928   SSF54928       
SSF52540   SSF52540       
SSF100966   SSF100966       
SSF75689   SSF75689       

Gene 3D

1.10.246.90     1.10.287.660     3.30.70.330    

ProteinModelPortal

H9J993   A0A2H1X0C1   A0A2A4JKJ4   A0A2W1BVK5   A0A194Q0C8   A0A194R708   + More
S4P206   A0A212FGN2   A0A1E1WCL6   A0A0L7LG86   A0A087ZZZ5   A0A2A3E580   A0A154PKI1   B4HXZ8   B4N068   D6WGW9   A0ANZ0   A0A1W4X4X6   A0ANY9   B4Q595   Q9U5W4   A0A1W4UQ94   Q9VM69   A0A0L7R3J5   B3MKR6   B4NZZ2   V5H0A7   B5DK75   B3N662   B4LRP1   A0A1L8DHH6   A0A1L8DH61   B4GKZ4   A0A1L8DHE6   A0A1I8QEY6   A0A1A9V9M1   A0A3B0KD38   A0A1Q3F065   A0A1Y1MP76   D3TND0   A0A067RI98   B0X5E5   A0A0C9QIS7   A0A1A9W031   A0A0M4E4A3   A0A1B0A509   B4JQL6   A0A0L0BQJ7   A0A1A9XGV6   A0A1B0BJH4   A0A336LXS0   B4KJW5   A0A2P8XVX0   A0A0N0U576   A0A1B0FF83   U5EYK2   A0A1I8MP78   A0A1J1I5D9   A0A1B6FBC6   A0A182RFT9   A0A0M9A283   W8BSS4   A0A1B6L2R7   A0A1B6HPN4   K7ILS5   A0A2M4BJ71   A0A2M4BJE9   A0A2M4BJ45   A0A2M4BJ39   A0A0K8UHY0   A0A182FQN3   A0A2M4BJC8   A0A034VYR3   A0A182TDW1   A0A0A1WU25   A0A2M4ADG7   A0A2M4AD97   A0A182VCD0   Q7QK65   A0A0P5P451   A0A182MG25   A0A0N8AK20   A0A182QC14   A0A182LQQ0   A0A0P6GUL0   A0A0P5D0G8   A0A0P4WWJ6   A0A2M3Z4S2   A0A2M3Z4E5   A0A0N8C939   A0A0P5BB74   A0A0P4YCA3   A0A0P4WYQ8   A0A0P5D1V1   A0A0P5QYW7   A0A0P5P4L3   W5J4V6   A0A0P5TSS0   A0A0P5FL43   A0A0P5DS21  

PDB

5WYK     E-value=6.19427e-98,     Score=914

KEGG

101742458    K14565 nucleolar protein 58 | (RefSeq) nucleolar protein 58

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0005730   GO:0031428   GO:0032040   GO:0030515   GO:0006364   GO:0005524   GO:0003723   GO:0003678   GO:0006260   GO:0003743  

Length:

529

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.017

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00033

outside

1  -  529

 

 

Pi

16.471589

Theta

22.52322

Tajima's D

0.454087

CLR

0.164961

CSRT

0.512374381280936

Interpretation

Uncertain