Gene

KWMTBOMO01595

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr3(-):14818462-14819160      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.952 PlasmaMembrane   Reliability : 1.288

CDS

ATGCAATGTCCCAGCTGCATAAGATATGGAGAGACCAGAAAAACTAAAACCAAATTGGTGAGTTCGCTAGTTTTCTCCATATTCAATTATGGCGCGGAGACCTGGACAATGAAGAAGGCCGACAGAGACCGAATAGACGCTTTTGAAATGTGGTGTTGGAGAAAAATGCTACAGATTCCATGGACCGCCTTTCGCACCAACGTGTCTATTCTGAGAGAGCTTCATATCAAAGCCAGACTTTCCACTATATGCCTTCGTGGGGTGCTGGAATTCTTCGGACATATTGCTTGTAAAGAGGGTCACAATCTTGAACAGCTGATGGTGACAGGAAAGGTATATGGCAAACGTCCCAGAGAACGCAGTCCCACGAGATGGTCGGACCAAATACGATCTTCTCTGAGCATCAATTTCCATAATGCCCTTTATGAAGCAAAGGATCGCGGCAGATGGAGGGAAGTCGTATGGGAGAAACTGATGCAGCGGGGGAGTCTCGACCCTCAGTAA

Protein

MQCPSCIRYGETRKTKTKLVSSLVFSIFNYGAETWTMKKADRDRIDAFEMWCWRKMLQIPWTAFRTNVSILRELHIKARLSTICLRGVLEFFGHIACKEGHNLEQLMVTGKVYGKRPRERSPTRWSDQIRSSLSINFHNALYEAKDRGRWREVVWEKLMQRGSLDPQ

Uniprot

D7F163   A0A2H1VNK5   A0A2H1V742   A0A2H1VU13   D7F172   D7F161   + More
D7F168   D7F162   D5LB39   D7F175   D7F167   A0A2W1BGD9   D7F174   A0A2G8LJK7   A0A2G8JE23   H2YWZ6   A0A2G8K796   H2YWZ5   A0A2G8K327   A0A2G8KTJ4   A0A2G8JVA1   A0A2G8L6P4   W5NMM5   A0A2G8K183   A0A2G8JVI4   O97916   W5NIE2   X1D4L4   W4Y921   W5MM77   A0A2H6KKM9   A0A085LZ21   W4YPU3   A0A2A4J795   A0A061BKJ9   W5MW18   W5NLK6   J9LZK0   X1WK45   A0A0B7BSZ9   A0A0B7BUR9   A0A0B7BT80   W5N9W4   A0A067RQM5   A0A067QJX4   A0A067QUH9   A0A067QZY5   A0A0B7BVD9   W5NMX6   A0A0B7BVD3   A0A0B7BSB6   A0A067R8J7   W5MYT3   A0A067QXS5   A0A146L0Z1   A0A2W1BSS7   W4YNG7   W4ZJA4   A0A067RDT2   A0A067RS42   D5LB38   A0A0B7BT11   A0A2S2NMQ2   X1XC23   A0A0J7KZE8   W4XFH1   A0A076N3Z4   A0A0K8T3U8   H3B2Y3  

Pubmed

20470440    28756777    29023486    10555285    24624126    29078748    + More
24929829    24845553    26823975    9215903   

EMBL

FJ265548    ADI61816.1    ODYU01003523    SOQ42419.1    ODYU01001007    SOQ36619.1    + More
ODYU01004401    SOQ44236.1    FJ265557    ADI61825.1    FJ265546    ADI61814.1    FJ265553    ADI61821.1    FJ265547    ADI61815.1    GU815090    ADF18553.1    FJ265560    ADI61828.1    FJ265552    ADI61820.1    KZ150203    PZC72267.1    FJ265559    ADI61827.1    MRZV01000056    PIK60437.1    MRZV01002322    PIK33998.1    MRZV01000817    PIK43880.1    MRZV01000940    PIK42365.1    MRZV01000378    PIK51329.1    MRZV01001216    PIK39650.1    MRZV01000196    PIK55924.1    AHAT01022938    MRZV01000994    PIK41715.1    MRZV01001207    PIK39730.1    AJ132772    CAA10770.1    AHAT01009145    BART01031562    GAH15691.1    AAGJ04161766    AHAT01015286    BDSA01000081    GBE63537.1    KL363256    KL367985    KFD50217.1    KFD59415.1    AAGJ04055194    NWSH01002736    PCG67606.1    LK055282    CDR71995.1    AHAT01013157    AHAT01013158    AHAT01012943    ABLF02042206    ABLF02024992    ABLF02024994    ABLF02025002    ABLF02043975    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    AHAT01022314    KK852482    KDR22935.1    KK853249    KDR09341.1    KK852941    KDR13536.1    KK852843    KDR15156.1    HACG01049255    CEK96120.1    AHAT01025955    HACG01049245    CEK96110.1    HACG01049249    CEK96114.1    KK852811    KDR15914.1    AHAT01017643    KK853131    KDR10935.1    GDHC01017214    JAQ01415.1    KZ149985    PZC75696.1    AAGJ04167631    AAGJ04021158    KK852530    KDR21932.1    KK852456    KDR23625.1    GU815089    ADF18552.1    HACG01049494    HACG01049495    CEK96359.1    CEK96360.1    GGMR01005851    MBY18470.1    ABLF02031909    LBMM01001656    KMQ95932.1    AAGJ04075245    KF881086    AIJ27485.1    GBRD01005612    JAG60209.1    AFYH01119920   

Proteomes

UP000230750    UP000007875    UP000018468    UP000007110    UP000218220    UP000007819    + More
UP000027135    UP000036403    UP000008672   

PRIDE

D7F163    D7F172    D7F161    D7F168    D7F162    D5LB39    + More
D7F175    D7F167    D7F174    D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03221   HTH_Tnp_Tc5
PF04218   CENP-B_N

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF46689   SSF46689       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F163   A0A2H1VNK5   A0A2H1V742   A0A2H1VU13   D7F172   D7F161   + More
D7F168   D7F162   D5LB39   D7F175   D7F167   A0A2W1BGD9   D7F174   A0A2G8LJK7   A0A2G8JE23   H2YWZ6   A0A2G8K796   H2YWZ5   A0A2G8K327   A0A2G8KTJ4   A0A2G8JVA1   A0A2G8L6P4   W5NMM5   A0A2G8K183   A0A2G8JVI4   O97916   W5NIE2   X1D4L4   W4Y921   W5MM77   A0A2H6KKM9   A0A085LZ21   W4YPU3   A0A2A4J795   A0A061BKJ9   W5MW18   W5NLK6   J9LZK0   X1WK45   A0A0B7BSZ9   A0A0B7BUR9   A0A0B7BT80   W5N9W4   A0A067RQM5   A0A067QJX4   A0A067QUH9   A0A067QZY5   A0A0B7BVD9   W5NMX6   A0A0B7BVD3   A0A0B7BSB6   A0A067R8J7   W5MYT3   A0A067QXS5   A0A146L0Z1   A0A2W1BSS7   W4YNG7   W4ZJA4   A0A067RDT2   A0A067RS42   D5LB38   A0A0B7BT11   A0A2S2NMQ2   X1XC23   A0A0J7KZE8   W4XFH1   A0A076N3Z4   A0A0K8T3U8   H3B2Y3  

KEGG

105841427    no KO assigned | (RefSeq) uncharacterized LOC105841427

GO

GO:0003964   GO:0004519   GO:0004197   GO:0003677   GO:0016021  

Length:

167

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.68711

Exp number, first 60 AAs:

3.66687

Total prob of N-in:

0.35985

outside

1  -  167

 

 

Pi

160.028609

Theta

129.471277

Tajima's D

0.741312

CLR

0

CSRT

0.583470826458677

Interpretation

Uncertain