Silkworm Genome Informatics Database

Gene

KWMTBOMO01586

Annotation

PREDICTED:_uncharacterized_protein_LOC106109531?_partial_[Papilio_polytes]

Location

Bomo_Chr3(-):14546804-14548288 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.585

CDS

ATGGCAAGACGACGATCAAAAAGCCAGTCCTTCGATGACGACGACAGTATTTTCGATCGACCAACGCGTGGTGGAATGTTTCACTTAACGGAGAATATCATCAGGAAGTTTGACGGCAAAGACAAAACTTATGCTGTAACAAAGTGGATACAAGATATAGAGGAAAATGGTGACATATTCGAGTGGACACCAAAGCAACGGTTATTAGTGGCTCGACGGTCATTAACCGGCACGGCAGCTTTGTGGTTAAATTCTGAAAAAACGTTTCCATGCTGGGATACTTTAAAGATAGCCATCAGTAAGGAGTTCCCTGACACCATAGACGCCAAGACTATTCACGAAATGATGAGTGCTAAAAAGAAAAAGTCAAATGAATCATGCATTGACTACATGTTTGCCATGAAAGAGCTTGGACGCCGAGGCAAAATGGCGGACTACGTGGCTATAAAATATGTTGTAGATGGCATACAAGATCAAGAAATAAATAAAATAATGCTATATGGAGTCACAACGTACGCTGAATTAAAGGAGAAATTAAAAATATACGAGATTTTGAAAGAAAAAATGGAGAAAGAACCTATTCACGGAAAAGAGCAGAAAATTACTAATACAAGAGAATGGTCATCAAAAGTTCGATGTTATAGCTGTGGAGAAAAGAGTCATAAAAGTGAAGATTGCCCGAAAAAGATGCAAGGAAAAAAGTGTTTCAACTGCAACGTGTTCGGCCATATTTCTTCACAATGTCCGGCAAAGGCGGAAGCGTCATCGACTACGGCTAGCAGCGCGAGAACGGAGCAGCAACCGAAACGCACGTATATCGCTACGACGCAGGAGGGCGCGAACACAATTTTCGAAAATCAATCTGACGAAGTTCACAACGCTATGAATGCTGTGATTGGCTCTGCGAACAGTACGGTGCGCGACAAATGTCATAACAGTGAGGTTGACATTTTAAAAGTAAATAAAGAATGTAAAGTGTTGAAAAAAACTTTGAAATTAGTAAAATTGTGTAATAATAACGAAATTCATGCATTAATTGATACTGGTAGTGAAGTTAATTTAGTAACCATGGACTATTATAAGCAAATAGGCTCTCCGACGTGTTTTAAAAATGTAAACACAGTTCTTACCGGTTTAGGCTCATCAAAGGTCATGTTATGA

Protein

MARRRSKSQSFDDDDSIFDRPTRGGMFHLTENIIRKFDGKDKTYAVTKWIQDIEENGDIFEWTPKQRLLVARRSLTGTAALWLNSEKTFPCWDTLKIAISKEFPDTIDAKTIHEMMSAKKKKSNESCIDYMFAMKELGRRGKMADYVAIKYVVDGIQDQEINKIMLYGVTTYAELKEKLKIYEILKEKMEKEPIHGKEQKITNTREWSSKVRCYSCGEKSHKSEDCPKKMQGKKCFNCNVFGHISSQCPAKAEASSTTASSARTEQQPKRTYIATTQEGANTIFENQSDEVHNAMNAVIGSANSTVRDKCHNSEVDILKVNKECKVLKKTLKLVKLCNNNEIHALIDTGSEVNLVTMDYYKQIGSPTCFKNVNTVLTGLGSSKVML

Uniprot

A0A2H1VAI8 A0A2A4JH77 A0A0J7K9X8 A0A023EZG2 A0A023EYH9 A0A023EY26 + More
A0A224XHR1 A0A069DWV3 A0A232EEC1

Pubmed

25474469 26334808 28648823

EMBL

ODYU01001505 SOQ37806.1 NWSH01001586 PCG70783.1 LBMM01010976 KMQ87102.1 + More
GBBI01004551 JAC14161.1 GBBI01004550 JAC14162.1 GBBI01004477 JAC14235.1 GFTR01008753 JAW07673.1 GBGD01000341 JAC88548.1 NNAY01005459 OXU16662.1

Proteomes

UP000218220 UP000036403 UP000215335

Pfam

PF00098   zf-CCHC        + More
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00665   rve
PF00078   RVT_1
PF02037   SAP
PF17917   RT_RNaseH

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC
IPR001969   Aspartic_peptidase_AS
IPR001995   Peptidase_A2_cat
IPR012337   RNaseH-like_sf
IPR036361   SAP_dom_sf
IPR041577   RT_RNaseH_2
IPR001584   Integrase_cat-core
IPR000477   RT_dom
IPR003034   SAP_dom
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR041373   RT_RNaseH

SUPFAM

SSF57756   SSF57756        + More
SSF50630   SSF50630
SSF53098   SSF53098
SSF68906   SSF68906

Gene 3D

2.40.70.10 1.10.720.30 3.30.420.10

ProteinModelPortal

A0A2H1VAI8 A0A2A4JH77 A0A0J7K9X8 A0A023EZG2 A0A023EYH9 A0A023EY26 + More
A0A224XHR1 A0A069DWV3 A0A232EEC1

PDB

5UDZ E-value=0.000929699, Score=100

KEGG

105841836 no KO assigned | (RefSeq) uncharacterized LOC105841836

GO

GO:0003676 GO:0008270 GO:0004190 GO:0015074 GO:0043666 GO:0006508 GO:0006811 GO:0016020 GO:0005515 GO:0003779 GO:0016021

Length:

386

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00511

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08390

outside

1 - 386

Pi

18.026206

Theta

25.497619

Tajima's D

-0.857103

CLR

27.616966

CSRT

0.162341882905855

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree