SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01576
Pre Gene Modal
BGIBMGA008811
Annotation
PREDICTED:_uncharacterized_protein_PFB0145c-like_[Bombyx_mori]
Location
Bomo_Chr3(+):14266810-14285882      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.762
 

Sequence

CDS
ATGATTCATAACCGTCGGTTAACTGTTGCAGCTCTAAAATTAGACGCAAACAACCAGGAGGACGAAAACGGTCCGGCCGACGTCAAGACATCGGCTAGAACATTGAGCGACATCGTCTCCATATCCGACTTCGACGAACAGGACCTGCAGATGCGGAGAGCTGAATCGAAGGGCCACAACCTTAGTCTGGGCGAGCCCCCCTACGGCCCCCTCGGCCCCCCGCTGGACCTCCCCGCCCACACCCCCCGCGCGGACTCCCTGCCCGCGCACCTCACCTCCACGCAGAACAAAGACTTGTTGAAGCAATATAAAAGGAACGCTAATGAAATCACATTGTTCGGCGATTTTAAGCATTTGACCCAGAAAATAACCGATAATTGTTCAATGTATCCCAACAGGGACGTCAGCGACACCAAAAATCTTAGCGTCGAACCAAAAAAAATAAACTTCTCAATTGAACCGACCGCGGACAACCGAGACGAGGAGGAGTTCACTTCGCTGCGGGAACTCGGGATATATCTCGACACGAAGCAGCAGTGCTACCCCGACATCCTCACACAGCTGAAGCACGAAATCAAAAAATCTAGATCCGAATTGGAAAAGTGTAGATCTGAACTGAAAAATGCTGAAGAACAACTGTGCGAGTTCCCCGCGCTCAAACAGGAGGTGGAGCAGCTCAAGGGGCTCCTGGACAACACCGTGGCCGCCATGGACAACGACAAGAAGTTCTACGAAAATCAACTCGAGAGCTTCTCGGCGAACAAACAACTACTCGAACAGAGACTCACGGAGCTGAGTCAAGACGTCCATGACAAGTCTAAGGATCTGCACTTGCTCAAGGAAGACATACTCAGGAGAGAAAACATGATATTGGAACTTGCGAAAGAAAAGCGAAATCTGATGAACAAAATGGCTGAACTTGAACTTAAAATAGACGAGCTCCAGACCAAAAATACTTTACTAGAGAAATGCGAAGCGGAGAACTTGGAGATGAGAGAGAAGATGACGGAACTGACGAAGCTGGAGCAGCTCGTCAACGATAAAAACCAGCAGATCGACAGCCTCAACCAGCACCTGGACAGGCTGGACGACCTGCAGCGCCGCCTCCGCGACAAGTCCCAGCAGCACGACAGCCTCCAGCGCGCGCTGGCCGACAAGAGCGACGAGCTGGCCCGCCTCGCCGCCGCGCTGCACGCCCTGCGCCGCGACGCCGCCGACGCCGACCAGCTCCGGCTGCAGCTCTCTAAACTAGAAAAGGACCAGGAGAACGCCTTGTTGAAACTACAGAACACTCAAACTGAACTCGAGCGAGTCAACTCTCTCAACCAAGAGATGTCGCTGAAGATACAAGACATGAAGTCACTCACGGACCAATTAAAAGATAATGAAACTGAAATAGAAATTCTTAACGAGGACATTTCTGCGTTTCACTACGAAATAGCTTCGTTGAAGGACCAATTGAAGATGGCCTCCCGCAGCCCCTCGCCGCGGAAGGCCCCCGACGACCGGAGGGACGACCGGCCGGCTCGCTCCGACAAGAGGCAGCTCACCAAGATCAGGAAGCAGATATCTTTGTTGCAACACGAGCTGGACTTTAACAAGAAGGAATTGAACGATAAGGCGTTCGAGCTAGCGAAAGCGAAATTGGACATAACGGAACTCAAAAACAATTTGAGTCAAGCGGACAAACAAGTGTCGGACGCCGCCGCCGACCGCGAGCTCAGCGCGCAACGACACCACCAACTGCGCCACGACCTGCTGCACGCGCTGCAGGAGAAGCAGCAGCTGGCCGAGCAATTAGAGCTCGTACTGTCTAGGTTACGCGAGGAGTCAGATGTTGAAGAATTAAAGGCCAAGTTGAGGCAGCAAGTGGAGAGGTGTCACGAGCTGGAGGCCGAGCTGCAGGACGTCCGGGAGCTCGCCGACAGGTCTACCGGTCCCGACGAGGGGTCAGGAGGGGGGTCGAGAGACAGGGCGCGGTCCCCCACGGCGGAGTTGGAGCGAGCAGTGCGGCTGCAGCTGTCCTACTCGCACGCACTCGACCACACCATCATGGACCAGATCCTGTCCGCCAGCAGCGACGAGCACGAGCCCGTGCCGCGCCTGGCGCTCGCCGCCTCCGAGTCGAGCTCGGCCCGCTCGTCGCGCTCGGAGCGGGAGCGGGAGCGGGAGCGGGTGGCGGTGCTGGAGGAGCGGCTGCGGGACAAGGATGCGCTCATCGCTGAACTCAACAGGGTGCGGGAGCAGCTGGAGCGCGACTGGCAGACGGCCCGGCTGCGCTACGAGGCCGAGCGGGAGAACTCGGGCCGGCTGCAGCTGCTGCTCGACACGCAGAAGGAGACCGCTCTGACGCTGCAGAAGCAAGACTCGAACATGATCGAGATCCTCAAGAAGCGCTTGGAGAGCGCCATGCACGCGGAGCCGCCGCCGCGCTCCCCGCCGCAGAGTGAGAGCGAGGACCGATGGAAGGGCGAGGTCCTGCTACTGAAATCGAAGCTGCAGCTGGAGCGCGACAAGCTGTCCGACCAGCAAGCCATGTGGGAGCGGGACAAGCTGCACAAGCAGCGGGAGCTGGACGCCAAGAACGAGGTCTGCAACACGCTCAGGAACGAACTCGCACACATCAAGCGGCGCTCGCACGACTCCAGCCTCGAGCTGCTCCGCGCCAGGGAGCTGGCGGCCGCGCAGGCCAGGACCATCGACGCGCTGGAGCGGAGACTGGACGCCTGCGAGCGGCTCCGGCCCGTGGACGACGCGCTGTCGGAAATCGAGATCCACAAGATAGAGCTGACCCGCGAGATGTCCTCACTGAAGAAGTGTTTGTCGGACAGCATCCGCCCCGCCGACACCCCCGCGCCGCACCAGCTCATCCGCTGTCTCCACAGTCGTTGTATCCGCCTGGAGAGCATCCGTAAAGCTCTGATCTGGCAGAAGCGGTACCTTCAGCGGACACTGCACGGCTACGTCCAGCTCGAGAGGACGCTGCGGCTGCCCTCGTCCGGCGCCGCCCGGGTCAGCACTGGCAAGGAACGGTTCAAGTGCGCCGTGTGGGCGGTGGTGGGCGCCGTGCGGCTGCAGTACCTGGTGCGTCGCCGAAACGCGCGCGTCTCCGCCGCCGCCGCGCTGCTGCTCGACACTCCCGTGCAGCAGCGGCGCCCCCCCTCCGCGACCCCCGCAGCCCCCGCACTGAGCGAGTTCAACAGGAGGATGCAGTGCCCCAGCAGCTCCCCGCGCAGCGAGCCCTTCGTGCTGAGTTCACCTCGTGGTGAAATGGCGGCGGCCTACCTCAACAAGCTGGAGGCGGTCAGCCGGTGCCTCAACCAGACCCTCAGACCTGCGGACCGCACATGA
Protein
MIHNRRLTVAALKLDANNQEDENGPADVKTSARTLSDIVSISDFDEQDLQMRRAESKGHNLSLGEPPYGPLGPPLDLPAHTPRADSLPAHLTSTQNKDLLKQYKRNANEITLFGDFKHLTQKITDNCSMYPNRDVSDTKNLSVEPKKINFSIEPTADNRDEEEFTSLRELGIYLDTKQQCYPDILTQLKHEIKKSRSELEKCRSELKNAEEQLCEFPALKQEVEQLKGLLDNTVAAMDNDKKFYENQLESFSANKQLLEQRLTELSQDVHDKSKDLHLLKEDILRRENMILELAKEKRNLMNKMAELELKIDELQTKNTLLEKCEAENLEMREKMTELTKLEQLVNDKNQQIDSLNQHLDRLDDLQRRLRDKSQQHDSLQRALADKSDELARLAAALHALRRDAADADQLRLQLSKLEKDQENALLKLQNTQTELERVNSLNQEMSLKIQDMKSLTDQLKDNETEIEILNEDISAFHYEIASLKDQLKMASRSPSPRKAPDDRRDDRPARSDKRQLTKIRKQISLLQHELDFNKKELNDKAFELAKAKLDITELKNNLSQADKQVSDAAADRELSAQRHHQLRHDLLHALQEKQQLAEQLELVLSRLREESDVEELKAKLRQQVERCHELEAELQDVRELADRSTGPDEGSGGGSRDRARSPTAELERAVRLQLSYSHALDHTIMDQILSASSDEHEPVPRLALAASESSSARSSRSERERERERVAVLEERLRDKDALIAELNRVREQLERDWQTARLRYEAERENSGRLQLLLDTQKETALTLQKQDSNMIEILKKRLESAMHAEPPPRSPPQSESEDRWKGEVLLLKSKLQLERDKLSDQQAMWERDKLHKQRELDAKNEVCNTLRNELAHIKRRSHDSSLELLRARELAAAQARTIDALERRLDACERLRPVDDALSEIEIHKIELTREMSSLKKCLSDSIRPADTPAPHQLIRCLHSRCIRLESIRKALIWQKRYLQRTLHGYVQLERTLRLPSSGAARVSTGKERFKCAVWAVVGAVRLQYLVRRRNARVSAAAALLLDTPVQQRRPPSATPAAPALSEFNRRMQCPSSSPRSEPFVLSSPRGEMAAAYLNKLEAVSRCLNQTLRPADRT

Summary

Uniprot
H9JH14   A0A2H1WB22   A0A2W1BV06   A0A194Q321   A0A0L7KJ28   A0A212EIT8   + More
A0A0N0PAU4  
Pubmed
19121390    28756777    26354079    26227816    22118469   
EMBL
BABH01037611    ODYU01007414    SOQ50156.1    KZ149928    PZC77495.1    KQ459562    + More
KPI99738.1    JTDY01009562    KOB63343.1    AGBW02014564    OWR41407.1    KQ461158    KPJ08066.1   
Proteomes
UP000005204    UP000053268    UP000037510    UP000007151    UP000053240   
PRIDE
H9JH14   
Pfam
PF10495   PACT_coil_coil
Interpro
IPR019528   PACT_domain        + More
IPR028745   AKAP9/Pericentrin       
ProteinModelPortal
H9JH14   A0A2H1WB22   A0A2W1BV06   A0A194Q321   A0A0L7KJ28   A0A212EIT8   + More
A0A0N0PAU4  
PDB
1I84     E-value=0.00748834,     Score=97

Ontologies

KEGG
101739824    no KO assigned | (RefSeq) uncharacterized protein PFB0145c-like
GO
GO:0016301  
PANTHER
PTHR44981  

Topology

Length:
1116
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00649
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  1116
 
 

Population Genetic Test Statistics

Pi
292.064943
Theta
191.061213
Tajima's D
2.166069
CLR
0.682488
CSRT
0.906404679766012
Interpretation
Uncertain
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