SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01561
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.008
 

Sequence

CDS
ATGTCCCCCGAGTTCCCTGAGCTGTGGAGTGGTGAGGAGGATTGCAACATCACTATAGACAAGGCTTTCGCCGGCATCATGCAGTTGAGGATTGATTTCGTACATTTCACTATCGGTCAACCCAATAGGACAACTGGGGAGTGCGACGAGGACGCTATGATATTAGGGGACGGGGAAACGAAATTTGTTTTGTGCGGACAGAATCCTGGACAGCATTTTTACTACACACTATCCAGCAACAGCGAGAGAAGGGAAGCAGGGGACTTGGCTGGAAGTAAGTCTACGCAGCTATCGATGAGAATGCGGGCGTTGGATACTCCAAGGTTATGGCTGATGAGGCTCGCACAAATGCCACTGGCTAATTCAGCTCCGCACGACTGTCTTCAATACTACACTGAAAACAATGGCACAATAAAGACATTTAACTACGCCAAGAACGGCCGCCACCTCGCCGACCACGAGTACCGCTCCTGCGTCAGGAGGAACTCCGGGTTCTGTTCCATCAGATACGCGCCTTGCAACGAGCACTCCTTCAGGATAGGGCCCAGGGGGAACAGACCGGGACCCACGGAACCTACGGCTACAGAACCCGATGAAGTGATGCCAGCAGAAGACAATCAAAGCGAGGAAGATGATCTAGAAGGTTCTGGGATGGATCCGCAAATAGAAGCATCTCCTCCAGTGACAAGACCTAACACATTGTCTAGGATCTGGAGTTATATCTGGTCTTGGATGTGGGGACAGACTGGACGAGCCCACATCCGCTGGTCTCCGTACACCCAGTACCTCAATGAAGATGACAAAATCCGTTATTTCGGCTACGGTACTTTCGGGATAGGCCTCAAAGGCTTCGGGAGGCAGAGGTGCGAAGACAGGATCACTGTGCCCTGCGAGAATGAGTATTTCGTTTCGAGCAGCGCGTGGGGCGGCGGGGTATGCGACCCGCACCACTGCGGCGGCTCGTTCTGCCCGGGGCTCCCGGCGGCGCGGTGCTGGGTGGAGACGTCCAGCACGCCGTTCGCGGTCTCCGTGCACCTCGGGCCGCCGACACCCAAACTCAGCCCCGAGGATAACATCGGCGCCTGCCTCAGGAAAGCCTTAGAGGAGTGGGAGGGGGGCATCTCAGTCGGTGGCATAAAAATTAGCAATCTGAGATATGCGGACGATACCACGCTTTTCGCGTCATCTGAGAAGGAACTTGCTGACCTATTCCGTAGAGTGGAGTATGAGAGTAGTTTAGTGGGGCTCTCCGTTAATAAGTCCAAAACAAAGGTCATGATAGTGGACAGAACCAGTCAACTCTCTAGAACTGGAGAGCTATCAGATCTAGAATTTGTCAGCGAGTTCATATACCTCGGGTCCTTACTGACCGACCGCGGAGGCAGTGAGGGAGAGATAAGGAGGAGGACGCAGATGGCCAAAACAGCGATGACCAAGCTCAAACGAATATGGCAAAATCGCAAAGTCTCCAACGTCACGAAAATGAGACTCGTCCGAACCTTAGTTTTCTCCATCTTTCTCTACGGGGCAGAGTCCTGGACAATTAAGGCATCCGAGCGCAAGAAAATAAACGCATTTGAAATGTGGTGCTGGAGACGAATGCTCCGAATTCCGTGGACGGCCAAGAGGACAAATAAATCTATCCTGGATCAGCTTCGCATCCGAGTCAGGCTCTCAACAATCTGTTACCAGAGGATCCTCAGCTACTTCGGTCATATTGCCCGCCGACAGTCAGATAACTTGGACAAAGTGATTGTGACGGGCAAAGTAGAAGGAAAGAGACCCCGCGGCCGATTACCTAGCCGTTGGTGTGATCAAGTAACCGCTCTAACTGGGTTGCCAGTCGCAACCGCCATTCGAGCAGCTGAGGACCGGACGAGATGGAAACAGCTCACGAGACAGGCAACGGTCGAGTTTCAGGGACACGACCTTCAGTAA
Protein
MSPEFPELWSGEEDCNITIDKAFAGIMQLRIDFVHFTIGQPNRTTGECDEDAMILGDGETKFVLCGQNPGQHFYYTLSSNSERREAGDLAGSKSTQLSMRMRALDTPRLWLMRLAQMPLANSAPHDCLQYYTENNGTIKTFNYAKNGRHLADHEYRSCVRRNSGFCSIRYAPCNEHSFRIGPRGNRPGPTEPTATEPDEVMPAEDNQSEEDDLEGSGMDPQIEASPPVTRPNTLSRIWSYIWSWMWGQTGRAHIRWSPYTQYLNEDDKIRYFGYGTFGIGLKGFGRQRCEDRITVPCENEYFVSSSAWGGGVCDPHHCGGSFCPGLPAARCWVETSSTPFAVSVHLGPPTPKLSPEDNIGACLRKALEEWEGGISVGGIKISNLRYADDTTLFASSEKELADLFRRVEYESSLVGLSVNKSKTKVMIVDRTSQLSRTGELSDLEFVSEFIYLGSLLTDRGGSEGEIRRRTQMAKTAMTKLKRIWQNRKVSNVTKMRLVRTLVFSIFLYGAESWTIKASERKKINAFEMWCWRRMLRIPWTAKRTNKSILDQLRIRVRLSTICYQRILSYFGHIARRQSDNLDKVIVTGKVEGKRPRGRLPSRWCDQVTALTGLPVATAIRAAEDRTRWKQLTRQATVEFQGHDLQ

Summary

Uniprot
ProteinModelPortal

Ontologies

GO

Topology

Length:
645
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.17056
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00015
outside
1  -  645
 
 

Population Genetic Test Statistics

Pi
290.236702
Theta
201.043738
Tajima's D
1.428264
CLR
0.216099
CSRT
0.771561421928904
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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