Gene

KWMTBOMO01559

Pre Gene Modal

BGIBMGA010729

Annotation

hypothetical_protein_AB894_15365?_partial_[Piscirickettsia_salmonis_LF-89_%3D_ATCC_VR-1361]

Location

Bomo_Chr3(-):13874981-13879555      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.488

CDS

ATGAAAACCGATTCCAACAACTATCCTACATACGCGGAATATGTTAGGCGATCTTTATTGCGTCTTCGTATAGTAAATGGACTTAGTGACGAATTAGTTTCAGCAATAGTGATCCGAGGTATCGTTGATCCACAAATTCGTGCGGCCGCTACAAACGCGAGGTTATTGCCTAACGATTTAGTTGAGTTTTTCTCCATATATGTAAAGCCTACACCTCAAACAAAAACAAATCATAATACTCGCACTGTAGCTGGTCGCTTTCATAATACACAATTCTCATCACGTAAAAGAGAGCATAGTTCTAGTAGAACCGGTTGTTACGTATGTGGATCATTTGGCCATAGACAAGTGAATTGCCCTAAGCGAACGAGAAAACGTTCGCCTACTGTGAATGATAGATTCACATCTGTACCCGCTGCCAGCTCCTCTGTGCAGAAGCCTGAACCTTGTTCTTTTTGTAAAAAGCTGGGCCGTAAAGTAGAGCAGTGTTTCTTTAAGCAGCGTTCTGAAGCTCGAGGAAAATCTAACGTGAATTTTTGCCGTGATACTGTAAATGACTATAGAAAAAATGATATAGCTACTGCGATCGTACAGGGTGTACCAGTCGATATCCTGATAGATAGTGGATCCACAGTCTCGCTTATGTCTGAATCAATTGTAAAACATTTTCAATGTAAACGAGTACCCTCATTTTGCGTGTTACGAGGAATTGGTGACTGTGATACTGAATCTCGCTATTTTACTACTTTGACAGTTGAGTTTCCCGAAATCACACTAGAAATAGACTTTCAAATTGTTAGTGACAAGTTCATGAATACTCCAGTCATAATCGGTACTGACGTTTTGAATCGGGAAGGTGTCACGTATATTAGGAAAAAGGGCATACAGCGCTTAACTCGGGTAGAAAAGGTTTTTACTGCTGAGACAACTGAACTTAATTCAATCCCTACCGTGAATACTTCATTAACAGGTGAAGAAAAAAATAAATTATTAGCTTTGGTACGAAAATTTTCAAAATACCTTATAACTGGTACCGCGGCCAGTACTGTTACAACTGGATCCATGCAAATTCGACTCAGCAATGAAACTCCTATTGTTTACAGACCTTACAAATTATCATTTAGCGAAAAACTTCGCGTTAGAGAAATTATTAAAGATCTTCTTGATAAAGGTGTGATTAGGGAGTCTGAATCGGAGTTCTCGAGTCCGATATTGCTAGTTAAGAAAAAGGACGGCAGTGACAGGATGTGCGTGGACTTTCGGGCTCTTAATGCGAATACTGTGAAGGATCGCTATCCATTGCCGTTAATAGACGATCACATTGACCGGTTAGGTAGCGCAAAATATTTTACAAGCCTCGATATGGCCACTGGTTTCCACCAGATTCCTTTAGCAAACGACTCCATTCACAAAACCGGTTTTGTGACACCCGAAGGTCATTTTGAATACCTTAAAATGCCCTACGGGTTAGCCAATGCCCCGGTTGTTTATCAACGTATTATAACTAATACTCTGAAAGCCTTTAGTGAGACAGGGAGGGCTTTAATCTATATCGATGATGTTTTAATACCTAGTCAGACCATTGATGAAGGCCTAAATACTCTGCGTGAAATCTTTGAAACACTAACTAAGGCGGGCTTCTCAATTAATTTAAAAAAATGCAAGTTTCTTGCTAACGAAATTGAATATTTGGGCAGAACTATCAGCAATGGTCAGGTTAGGCCGAGTGCGTATAAAGTAGAAGCATTGACAAGAGCCCCGAAGCCTGGTAATGTTAAACAAGCTAGACAATTTTTAGGTCTAGCGGGTTATTTTCGGCGCTATATTCCTGCATATTCGTTGCAGACAGCTTGTATTTCTAATCTGTTTCGTAAAGGTGTTGAGTTTAAATGGGGTGATGAACAGGAACAAGTACGCCAGTATATAATTACGCGTTTAACCAGTGAACCTGTCCTCAATATATTTAATCCATCATTATTAACAGAAGTACACACTGATGCTTCTTCTCGAGGGTATGGAGCTGTTTTACTTCAGACTCATGGGAATAATAATAAACGCGTGGTGGGATATTTTAGTAAAGTTACCCAAGGCGCCGAACCACGCTATCACTCCTATGAGCTGGAGACACTCGCTGTGGTCAAGGCTCTGCAGCATTTCAGGCACTACCTCATAGGTATACATTTCAAGGTAGTTACAGACTGCAACGCTTTGAAGCTTACCCAACGTAAAAAAGATTTACTACCGAGAGTCGCTCGGTGGTGGATCTACTTACAAGATTATGATTTTTCGTTAGAGTATCGTAAGGGCGCTGTGCTATCTCATGCCGACTATCTAAGTCGTAATCCTATAAATGTTTGTGAAATTGGTAGACCGCATAACTGGGCACAGATAGCACAGAGTGCTGATGAAGAAACTCGGAATTTAATACAAAAGTTACAAAACGGTGAATTAGATGAGACACGCTATGTAACTAAAAATGATGTTCTTTATTATAAATTTGATTCTGTTGGCCAACCTAGTAAATTATTATGTTATATTCCAAGAGGACATCGCCTCAGTTTGTTACGAATCTTTCATGATGAGCATCATCATATTGGAGTAGATAAGACGCTTGATCTAATATTAAACCATTTTTGGTTTCCTAGTCTAAGACAATTTGTTCGTAAATATGTACGCCATTGTATAGTATGTCTTTCACACAAAAAAATACCACGTCAACCCTTGCAGCCGATCGAGTCGTGGAAGAAACCGGACGTACCCTTTGACACGGTACATAGTGATGTCTTGGGTCCTCTTCCCGAATCGAACGGTTACAAATTTGTTGTCTTGATAATTGACGCTTATAGTAAGTTCTGTCTACTAAATCCTATGCGTAAGCAGGATGCAACAGAGTTAAAATTAGTATTTGAAAACGCTGTATCTTTATTTGGTGCACCTAGGCAGATTGTAACCGATAGGGGTAGAATGTACGAAAATAGATCATTTAGACAATGGGTATCAGACGTAGGTAGTAATTTATTCTTTATAACGCCAGAGATGCACCAGAGTAACGGTCAGGCTGAGAGATATTGCAGAACAGTTCTTAATATGATTCGTGTGGAGGTAAATTTCAGAAACGAAAATTGGTCAGAAGTTTTGTGGAAACTGCAGCTCACCCTGAACGTTACGAAACAAAAGTCCACTCAATATTCACCTTTATATTTGTTAATTGGTAGCGATGCTGTGACGCCCGTCATTCGTTCCGTTGTACGCGATGTGGCTCTAGAAGGAACAAGTGCCAACAGAGAAACCTTACGCGAGCTTGCCCGACAAAGAGCTTCTCAACTGCTGGACAAAAACCGAAAACAGCAGGACACTCGAGTAAATGAACGGCGCAAACCCCCGCGTACTTTCCATGAAAACGACGTGGTCTTCGTGCATAAGAATAGCCAGTCTGTTGGAAAGCTGGATTCTGGTATGCGTGGCCCGTACAAAATAGTGCGTGCGCTGCCACATGGACGTTATGAACTGAAGCTTCTTTCTGGCTCACTTGGGAAGACCACGGAAGCTGCTGCCGAATTTATAAGTGCCTGGCACGGAGAGTGGACGCCGGATGTGTGCACCGCATTTTTCGAGTGTGATGAGAATAGCTCTGAGGAAGGTATTGTCGCCGGTCCATCACACCGCCATGACGACATAGTACCTCTAGACGGACCTATTAATGCGGGCGAGGACGCTCCGCCGTCAGGAGAGGCCGTGTTAGAAGATGATGATGACATTGGAGGCGTGGCCTAA

Protein

MKTDSNNYPTYAEYVRRSLLRLRIVNGLSDELVSAIVIRGIVDPQIRAAATNARLLPNDLVEFFSIYVKPTPQTKTNHNTRTVAGRFHNTQFSSRKREHSSSRTGCYVCGSFGHRQVNCPKRTRKRSPTVNDRFTSVPAASSSVQKPEPCSFCKKLGRKVEQCFFKQRSEARGKSNVNFCRDTVNDYRKNDIATAIVQGVPVDILIDSGSTVSLMSESIVKHFQCKRVPSFCVLRGIGDCDTESRYFTTLTVEFPEITLEIDFQIVSDKFMNTPVIIGTDVLNREGVTYIRKKGIQRLTRVEKVFTAETTELNSIPTVNTSLTGEEKNKLLALVRKFSKYLITGTAASTVTTGSMQIRLSNETPIVYRPYKLSFSEKLRVREIIKDLLDKGVIRESESEFSSPILLVKKKDGSDRMCVDFRALNANTVKDRYPLPLIDDHIDRLGSAKYFTSLDMATGFHQIPLANDSIHKTGFVTPEGHFEYLKMPYGLANAPVVYQRIITNTLKAFSETGRALIYIDDVLIPSQTIDEGLNTLREIFETLTKAGFSINLKKCKFLANEIEYLGRTISNGQVRPSAYKVEALTRAPKPGNVKQARQFLGLAGYFRRYIPAYSLQTACISNLFRKGVEFKWGDEQEQVRQYIITRLTSEPVLNIFNPSLLTEVHTDASSRGYGAVLLQTHGNNNKRVVGYFSKVTQGAEPRYHSYELETLAVVKALQHFRHYLIGIHFKVVTDCNALKLTQRKKDLLPRVARWWIYLQDYDFSLEYRKGAVLSHADYLSRNPINVCEIGRPHNWAQIAQSADEETRNLIQKLQNGELDETRYVTKNDVLYYKFDSVGQPSKLLCYIPRGHRLSLLRIFHDEHHHIGVDKTLDLILNHFWFPSLRQFVRKYVRHCIVCLSHKKIPRQPLQPIESWKKPDVPFDTVHSDVLGPLPESNGYKFVVLIIDAYSKFCLLNPMRKQDATELKLVFENAVSLFGAPRQIVTDRGRMYENRSFRQWVSDVGSNLFFITPEMHQSNGQAERYCRTVLNMIRVEVNFRNENWSEVLWKLQLTLNVTKQKSTQYSPLYLLIGSDAVTPVIRSVVRDVALEGTSANRETLRELARQRASQLLDKNRKQQDTRVNERRKPPRTFHENDVVFVHKNSQSVGKLDSGMRGPYKIVRALPHGRYELKLLSGSLGKTTEAAAEFISAWHGEWTPDVCTAFFECDENSSEEGIVAGPSHRHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIGGVA

Uniprot

A0A146M2J2   A0A0A9X1Z8   A0A0J7KEC9   B7S8P8   A0A0A9WJJ8   A0A0C9RXL6   + More
A0A0A9Z954   A0A139WJA1   A0A139WIQ0   A0A194R1L3   J9JJ45   A0A0J7K9X8   A0A0J7KLK4   A0A0J7NF11   A0A147BLC5   A0A2S2P032   A0A1Y1MFA9   X1X5H2   A0A0J7K890   X1WPP0   A0A2S2PGQ9   A0A2S2NFQ4   W8C8Q1   A0A2H8TRV6   A0A1W7R6G2   A0A023EY26   J9LBS9   W8B0V9   X1XU14   A0A2S2NKJ2   A0A034VPR8   A0A023EZG2   J9JQ65   A0A023EYH9   A0A224XHR1   A0A0A1XB16   A0A1W7R6L8   J9JZ77   A0A0A1XFE9   A0A034VLR3   A0A2S2PFS2   A0A034WRX5   T1PMR9   A0A034W795   A0A034VKV9   X1XU22   A0A0A1WKC8   A0A1W7R6R7   W8APB2   A0A023EYF0   A0A023F013   A0A1W7R6H1   A0A1W7R6G1   A0A034VAM6   A0A139WCC5   A0A139WCG2   A0A2M4AEU2   A0A2M4CKM2   X1X261   L7LV55  

Pubmed

26823975    25401762    18362917    19820115    26354079    29652888    + More
28004739    24495485    25474469    25348373    25830018    25576852   

EMBL

GDHC01004980    JAQ13649.1    GBHO01030786    JAG12818.1    LBMM01008871    KMQ88569.1    + More
EF710649    ACE75273.1    GBHO01036023    GBHO01032007    JAG07581.1    JAG11597.1    GBYB01013920    JAG83687.1    GBHO01040010    GBHO01001812    JAG03594.1    JAG41792.1    KQ971338    KYB27887.1    KYB27888.1    KQ460883    KPJ11409.1    ABLF02008401    ABLF02008404    LBMM01010976    KMQ87102.1    LBMM01005919    KMQ91096.1    KMQ91095.1    GEGO01004299    JAR91105.1    GGMR01009949    MBY22568.1    GEZM01033083    JAV84424.1    ABLF02004401    ABLF02013544    ABLF02013550    LBMM01011782    KMQ86633.1    ABLF02033943    ABLF02042737    GGMR01016004    MBY28623.1    GGMR01003388    MBY16007.1    GAMC01007326    JAB99229.1    GFXV01005120    MBW16925.1    GEHC01000888    JAV46757.1    GBBI01004477    JAC14235.1    ABLF02041876    GAMC01015907    JAB90648.1    ABLF02003120    ABLF02004015    ABLF02057179    ABLF02066208    GGMR01005091    MBY17710.1    GAKP01014483    JAC44469.1    GBBI01004551    JAC14161.1    ABLF02005846    GBBI01004550    JAC14162.1    GFTR01008753    JAW07673.1    GBXI01005773    JAD08519.1    GEHC01000930    JAV46715.1    ABLF02014660    ABLF02042774    GBXI01004632    JAD09660.1    GAKP01016237    JAC42715.1    GGMR01015682    MBY28301.1    GAKP01001563    JAC57389.1    KA649989    AFP64618.1    GAKP01008942    JAC50010.1    GAKP01016235    JAC42717.1    ABLF02017401    GBXI01015151    JAC99140.1    GEHC01000880    JAV46765.1    GAMC01020207    JAB86348.1    GBBI01004549    JAC14163.1    GBBI01004613    JAC14099.1    GEHC01000876    JAV46769.1    GEHC01000891    JAV46754.1    GAKP01019383    JAC39569.1    KQ971370    KYB25609.1    KYB25610.1    GGFK01005990    MBW39311.1    GGFL01001689    MBW65867.1    ABLF02005127    ABLF02005129    ABLF02007401    GACK01009547    JAA55487.1   

Proteomes

UP000036403    UP000007266    UP000053240    UP000007819   

Pfam

PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF00077   RVP
PF00665   rve
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF14392   zf-CCHC_4
PF13873   Myb_DNA-bind_5
PF02037   SAP
PF03732   Retrotrans_gag
PF16064   DUF4806
PF09668   Asp_protease
PF12384   Peptidase_A2B
PF07530   PRE_C2HC
PF03273   Baculo_gp64

Interpro

IPR001969   Aspartic_peptidase_AS        + More
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR001995   Peptidase_A2_cat       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR021109   Peptidase_aspartic_dom_sf       
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR018061   Retropepsins       
IPR036397   RNaseH_sf       
IPR036875   Znf_CCHC_sf       
IPR041373   RT_RNaseH       
IPR034122   Retropepsin-like_bacterial       
IPR025836   Zn_knuckle_CX2CX4HX4C       
IPR028002   Myb_DNA-bind_5       
IPR036361   SAP_dom_sf       
IPR003034   SAP_dom       
IPR005162   Retrotrans_gag_dom       
IPR032071   DUF4806       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR024650   Peptidase_A2B       
IPR004955   Baculovirus_Gp64       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF68906   SSF68906       

Gene 3D

2.40.70.10     3.30.420.10     1.10.720.30    

CDD

cd05483  retropepsin_like_bacteria

ProteinModelPortal

A0A146M2J2   A0A0A9X1Z8   A0A0J7KEC9   B7S8P8   A0A0A9WJJ8   A0A0C9RXL6   + More
A0A0A9Z954   A0A139WJA1   A0A139WIQ0   A0A194R1L3   J9JJ45   A0A0J7K9X8   A0A0J7KLK4   A0A0J7NF11   A0A147BLC5   A0A2S2P032   A0A1Y1MFA9   X1X5H2   A0A0J7K890   X1WPP0   A0A2S2PGQ9   A0A2S2NFQ4   W8C8Q1   A0A2H8TRV6   A0A1W7R6G2   A0A023EY26   J9LBS9   W8B0V9   X1XU14   A0A2S2NKJ2   A0A034VPR8   A0A023EZG2   J9JQ65   A0A023EYH9   A0A224XHR1   A0A0A1XB16   A0A1W7R6L8   J9JZ77   A0A0A1XFE9   A0A034VLR3   A0A2S2PFS2   A0A034WRX5   T1PMR9   A0A034W795   A0A034VKV9   X1XU22   A0A0A1WKC8   A0A1W7R6R7   W8APB2   A0A023EYF0   A0A023F013   A0A1W7R6H1   A0A1W7R6G1   A0A034VAM6   A0A139WCC5   A0A139WCG2   A0A2M4AEU2   A0A2M4CKM2   X1X261   L7LV55  

PDB

4OL8     E-value=3.69269e-77,     Score=738

KEGG

101738461    no KO assigned | (RefSeq) uncharacterized LOC101738461

GO

GO:0008270   GO:0004190   GO:0003676   GO:0015074   GO:0003964   GO:0019048   GO:0005634   GO:0006508   GO:0006811   GO:0016020   GO:0005515   GO:0003779   GO:0016021  

Length:

1257

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.428560000000001

Exp number, first 60 AAs:

0.40045

Total prob of N-in:

0.01960

outside

1  -  1257

 

 

Pi

249.224472

Theta

167.565211

Tajima's D

0

CLR

21.157146

CSRT

0.365481725913704

Interpretation

Uncertain