Gene

KWMTBOMO01557

Pre Gene Modal

BGIBMGA009080

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_potassium_voltage-gated_channel_protein_Shaw-like_[Bombyx_mori]

Location

Bomo_Chr3(+):13779766-13821043      View in EpiBrowser

Full name

Potassium voltage-gated channel protein Shaw      

Alternative Name

Shaw2

Location in the cell

Nuclear   Reliability : 2.728

CDS

ATGGACGCGGAGAATCGCGTCGTGCTGAACGTGGGCGGTATCCGACACGAGACTTACAAGGCGACCCTGAAGAAGATCCCCGCGACGCGGCTGTCCCGGCTGACGGAGGCGCTCGCCAACTACGACCCGGTGCTCAACGAGTATTTCTTCGACCGACACCCAGGGGTCTTCGCGCAAGTCCTCAACTACTACAGGACGGGCAAACTGCACTACCCAACAGACGTTTGCGGTCCACTTTTCGAGGAAGAGCTGGAGTTCTGGGGTCTGGATGCCAACCAGGTGGAGCCGTGTTGTTGGATGACTTACACACAGCACCGTGACACTCAAGAAACCCTGGCCGTCCTGGACCGCCTCGACTTGGACACTGAGAAGCCCACTGACGAGGAGGTCGCCCGTAAGTTCGGGTTCGAAGAAGATTACCTAAAAGGAACCGTTAGCTGGTGGCAACATCTGAAGCCCCAAATGTGGTCGTTATTCGATGAGCCGTACAGTTCAAATGCTGCTAAGATAATCGGTGTTATATCAGTGTTTTTCATTTGTGTATCGATAATATCGTTCTGCCTAAAAACGCATCCAGACATGAGAGTGCCAGTGATCAGAAACTATTCAGTCACGACTGCGAATCAAACGCAGAGCTGGGCGCTGGACAAAGTGCAGACAAACGCCCACATCGCGTTCTTTTACATCGAGTGTGTGTGTAACGCGTGGTTCACATTGGAGATCCTAGTCCGTTTCATATCCTCTCCAAATAAATGTGAATTCGTCAAATCCTCGGTCAACATCATCGACTACATAGCCACAATGAGCTTTTACATCGACCTCATTCTCCAAAAGTACGCCTCTCACGTCGAGAACGCTGATATCCTCGAGTTCTTCTCGATTATCAGGATTATGAGGCTGTTTAAGTTGACAAGACATTCGTCTGGCCTCAAAATCCTCATCCAGACTTTTAGAGCTTCTGCCAAGGAGTTGACACTGCTAGTGTTTTTCTTGGTACTGGGTATTGTGATTTTCGCAAGTCTGGTGTACTACGCGGAGAGGATACAGACGAATCCTCACAATGACTTCAATAGTATACCGCTGGGACTATGGTGGGCCCTAGTGACTATGACTACCGTTGGATATGGTGACATGGCGCCGAAAACCTACGTCGGAATGTTCGTTGGAGCGCTCTGCGCCTTAGCTGGGGTACTGACGATAGCGCTCCCAGTTCCAGTTATAGTATCGAACTTCGCCATGTACTATTCGCACACGCAAGCGAGGGCCAAGCTCCCGAAGAAGCGGCGAAGAGTCATCAATGTGGAACCAACCAGGCCGCCTCTCCGTGCCCCAGGAGTGACCGCCCCAGCTGGACCAATGGCTCCTGGCTTGGGACCTCAAGTCGTCAATCGACGTATGAACGCAATTAAGACCAACCATCCTAAAGATATGATGGGACCTAACATGGATGGTGATCGGTCCCCCATTCATCGCGGATGGAACAAAGTTGCAACTCTAATGCCCGGAATAGATCTCTCAGTTACCACACGATTAACGCCGAGCCCCCGGGACATGTCACCGGCACTGGCCATAGCTCTTCCCATGATGAAATCAGTTAACATCGTCCCAGTCCAGTGCTTCGACAACATGGCCTTCCATAACGACAAAGTCGAGGAGGTCAACAACGAAAATGACAGCAAGTCGTCGAGCAGAGAGGACTCAGTCGATAGCGACAACACCATTCGCGTGAACATCTACAAAAACGAAAACTATTTGGAAAAGATGGAGGATAAATCAGACGCCAGGACTCCGTTGTTACGTGAACACAAGAACGAGTCTCTAGACGAGACTAAATTAAGAACAGAAACGAAAATTGAAAAGAGAAAATCATCGGCATCAACATAA

Protein

MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDANQVEPCCWMTYTQHRDTQETLAVLDRLDLDTEKPTDEEVARKFGFEEDYLKGTVSWWQHLKPQMWSLFDEPYSSNAAKIIGVISVFFICVSIISFCLKTHPDMRVPVIRNYSVTTANQTQSWALDKVQTNAHIAFFYIECVCNAWFTLEILVRFISSPNKCEFVKSSVNIIDYIATMSFYIDLILQKYASHVENADILEFFSIIRIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQTNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVINVEPTRPPLRAPGVTAPAGPMAPGLGPQVVNRRMNAIKTNHPKDMMGPNMDGDRSPIHRGWNKVATLMPGIDLSVTTRLTPSPRDMSPALAIALPMMKSVNIVPVQCFDNMAFHNDKVEEVNNENDSKSSSREDSVDSDNTIRVNIYKNENYLEKMEDKSDARTPLLREHKNESLDETKLRTETKIEKRKSSAST

Subunit

Heterotetramer of potassium channel proteins.

Miscellaneous

The segment S4 is probably the voltage-sensor and is characterized by a series of positively charged amino acids at every third position.
This channel protein belongs to the delayed rectifier class.

Similarity

Belongs to the potassium channel family.
Belongs to the potassium channel family. C (Shaw) (TC 1.A.1.2) subfamily. Shaw sub-subfamily.

Keywords

Complete proteome   Glycoprotein   Ion channel   Ion transport   Membrane   Potassium   Potassium channel   Potassium transport   Reference proteome   Transmembrane   Transmembrane helix   Transport   Voltage-gated channel  

Feature

chain  Potassium voltage-gated channel protein Shaw

Uniprot

A0A2H1V711   A0A0N1PHV2   A0A212FAP3   A0A194Q2G7   A0A2W1BV13   A0A182QU70   + More
A0A1Y1M7E2   A0A3F2YYW0   A0A182WQJ4   A0A3F2YSL2   A0A1A9VEZ9   D6WY24   A0A2Y9D1M6   A0A182IRF4   A0A1A9WLW1   A0A0N8NZ42   B3MP64   A0A2S1ZNM1   A0A1B0CZX1   A0A0P8XEL5   A0A3F2YZM7   A0A084VFD8   Q7PNA8   A0A182YME7   A0A0P8XFD3   A0A1W4V6Z4   A0A0P8Y3F8   A0A1B0BC82   A0A0M5J915   B4MVB2   A0A1W4UU67   A0A0R1DLA8   B7Z009   Q8SYL2   A0A0Q9WC30   A0A0Q9WMU3   A0A0J9QVE0   A0A0R1DK24   A0A0Q5W947   A0A3Q0IYD3   A0A0J9QV95   T1HZM2   A0A0L0BZ92   A0A3B0K6G2   M9PEE2   A0A0Q5WKU9   A0A0J9QW61   B4KJY6   A0A0Q9XGG7   A0A1I8QE06   A0A1W4WIJ0   A0A1I8QE46   A0A0Q9WY08   A0A3Q0IYC6   A0A2H8TIL1   A0A3B0J9Y2   B4LRR6   W8B576   A0A2S2NDU8   A0A0R3NSI3   A0A1W4UUL4   A0A0Q9WBC3   A0A0Q9X595   A0A0R3NYT9   A0A1I8MT68   Q173H8   A0A0J9QV92   Q29MF1   M9PC22   B4JQJ2   A0A2J7RQJ8   B4NYE9   B3N373   B4Q9Q0   W8BSN9   A0A1W4WTF6   A0A0Q5W911   A0A0J9TF20   A0A0Q9XEU0   A0A1W4WIM4   P17972   W8BC83   A0A0R3NY40   B4G9C6   A0A0R3NTB3   A0A182R6F8   A0A182NFD3   A0A182Q0V9   A0A182WQJ3   A0A182HUF9   A0A336L929   A0A182XKZ6   A0A182UY67   A0A182J7D1   A0A182F5V1   A0A1S4GXK3   A0A084VFE2   Q7Q445   U5EZF9   A0A336MSP2  

Pubmed

26354079    22118469    28756777    28004739    12364791    18362917    + More
19820115    17994087    24438588    25244985    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18057021    22936249    26108605    24495485    15632085    23185243    25315136    17510324    2333511    2336395   

EMBL

ODYU01000994    SOQ36589.1    KQ460636    KPJ13361.1    AGBW02009441    OWR50798.1    + More
KQ459562    KPI99757.1    KZ149928    PZC77474.1    AXCN02000817    AXCN02000818    GEZM01038239    JAV81702.1    AAAB01008964    APCN01002460    APCN01002461    KQ971362    EFA08936.1    CH902620    KPU73276.1    EDV31230.2    MF359243    AWK26946.1    AJVK01009762    AJVK01009763    AJVK01009764    AJVK01009765    KPU73274.1    ATLV01012379    KE524786    KFB36682.1    EAA12472.5    KPU73275.1    KPU73277.1    JXJN01011881    CP012523    ALC38868.1    CH963857    EDW76457.2    CM000157    KRJ97229.1    AE014134    ACL82989.1    AY071475    AAF51068.3    AAL49097.1    CH940649    KRF81779.1    KRF81780.1    KRF81782.1    KRF81783.1    KRF81781.1    CM002910    KMY87966.1    KRJ97230.1    CH954177    KQS70065.1    KMY87968.1    ACPB03012579    JRES01001119    KNC25350.1    OUUW01000004    SPP79068.1    AGB92537.1    KQS70063.1    KMY87964.1    CH933807    EDW12589.2    KRG03313.1    KRF98462.1    GFXV01002036    MBW13841.1    SPP79067.1    EDW64668.2    GAMC01010255    JAB96300.1    GGMR01002775    MBY15394.1    CH379060    KRT04171.1    KRT04174.1    KRT04175.1    KRF81778.1    KRG03312.1    KRT04176.1    CH477424    EAT41194.1    KMY87967.1    EAL33743.3    AGB92536.1    CH916372    EDV99172.1    NEVH01001335    PNF43105.1    EDW87582.2    EDV57672.2    CM000361    EDX03661.1    GAMC01010254    JAB96301.1    KQS70064.1    KMY87965.1    KRG03314.1    M32661    GAMC01010253    JAB96302.1    KRT04173.1    CH479180    EDW28956.1    KRT04172.1    UFQS01002101    UFQT01002101    SSX13237.1    SSX32675.1    ATLV01012381    KFB36686.1    EAA12501.4    GANO01000869    JAB59002.1    UFQT01002344    SSX33246.1   

Proteomes

UP000053240    UP000007151    UP000053268    UP000075886    UP000075920    UP000075840    + More
UP000078200    UP000007266    UP000075884    UP000075880    UP000091820    UP000007801    UP000092462    UP000075902    UP000030765    UP000007062    UP000076408    UP000192221    UP000092460    UP000092553    UP000007798    UP000002282    UP000000803    UP000008792    UP000008711    UP000079169    UP000015103    UP000037069    UP000268350    UP000009192    UP000095300    UP000192223    UP000001819    UP000095301    UP000008820    UP000001070    UP000235965    UP000000304    UP000008744    UP000075900    UP000076407    UP000075903    UP000069272   

PRIDE

B7Z009    Q8SYL2    P17972   

Pfam

PF00520   Ion_trans        + More
PF02214   BTB_2

Interpro

IPR027359   Volt_channel_dom_sf        + More
IPR003131   T1-type_BTB       
IPR005821   Ion_trans_dom       
IPR003974   K_chnl_volt-dep_Kv3       
IPR015572   Shaw_inv       
IPR000210   BTB/POZ_dom       
IPR003968   K_chnl_volt-dep_Kv       
IPR011333   SKP1/BTB/POZ_sf       
IPR028325   VG_K_chnl       

SUPFAM

SSF54695   SSF54695       

Gene 3D

1.20.120.350    

ProteinModelPortal

A0A2H1V711   A0A0N1PHV2   A0A212FAP3   A0A194Q2G7   A0A2W1BV13   A0A182QU70   + More
A0A1Y1M7E2   A0A3F2YYW0   A0A182WQJ4   A0A3F2YSL2   A0A1A9VEZ9   D6WY24   A0A2Y9D1M6   A0A182IRF4   A0A1A9WLW1   A0A0N8NZ42   B3MP64   A0A2S1ZNM1   A0A1B0CZX1   A0A0P8XEL5   A0A3F2YZM7   A0A084VFD8   Q7PNA8   A0A182YME7   A0A0P8XFD3   A0A1W4V6Z4   A0A0P8Y3F8   A0A1B0BC82   A0A0M5J915   B4MVB2   A0A1W4UU67   A0A0R1DLA8   B7Z009   Q8SYL2   A0A0Q9WC30   A0A0Q9WMU3   A0A0J9QVE0   A0A0R1DK24   A0A0Q5W947   A0A3Q0IYD3   A0A0J9QV95   T1HZM2   A0A0L0BZ92   A0A3B0K6G2   M9PEE2   A0A0Q5WKU9   A0A0J9QW61   B4KJY6   A0A0Q9XGG7   A0A1I8QE06   A0A1W4WIJ0   A0A1I8QE46   A0A0Q9WY08   A0A3Q0IYC6   A0A2H8TIL1   A0A3B0J9Y2   B4LRR6   W8B576   A0A2S2NDU8   A0A0R3NSI3   A0A1W4UUL4   A0A0Q9WBC3   A0A0Q9X595   A0A0R3NYT9   A0A1I8MT68   Q173H8   A0A0J9QV92   Q29MF1   M9PC22   B4JQJ2   A0A2J7RQJ8   B4NYE9   B3N373   B4Q9Q0   W8BSN9   A0A1W4WTF6   A0A0Q5W911   A0A0J9TF20   A0A0Q9XEU0   A0A1W4WIM4   P17972   W8BC83   A0A0R3NY40   B4G9C6   A0A0R3NTB3   A0A182R6F8   A0A182NFD3   A0A182Q0V9   A0A182WQJ3   A0A182HUF9   A0A336L929   A0A182XKZ6   A0A182UY67   A0A182J7D1   A0A182F5V1   A0A1S4GXK3   A0A084VFE2   Q7Q445   U5EZF9   A0A336MSP2  

PDB

3KVT     E-value=3.52588e-63,     Score=615

KEGG

101745515    K04887 potassium voltage-gated channel Shaw-related subfamily C member 1 | (RefSeq) potassium voltag

GO

GO:0051260   GO:0034765   GO:0008076   GO:0005249   GO:0043025   GO:0016021   GO:0030424   GO:0032590   GO:0032809   GO:0005251   GO:0071805   GO:0005244   GO:0005267   GO:0030431   GO:0022843   GO:0005886   GO:0006813   GO:0005216   GO:0006811   GO:0016020   GO:0005515   GO:0003779   GO:0055085  

PANTHER

PTHR11537   PTHR11537:SF257  

Subcellular location

Membrane  

Length:

627

Number of predicted TMHs:

5

Exp number of AAs in TMHs:

107.91362

Exp number, first 60 AAs:

0.001

Total prob of N-in:

0.63467

inside

1  -  169

TMhelix

170  -  188

outside

189  -  223

TMhelix

224  -  246

inside

247  -  324

TMhelix

325  -  344

outside

345  -  358

TMhelix

359  -  376

inside

377  -  382

TMhelix

383  -  405

outside

406  -  627

 

 

Pi

195.499797

Theta

158.860889

Tajima's D

0.744532

CLR

0.223141

CSRT

0.586370681465927

Interpretation

Uncertain