Gene

KWMTBOMO01550

Pre Gene Modal

BGIBMGA009074

Annotation

PREDICTED:_uncharacterized_protein_LOC106138832_[Amyelois_transitella]

Location

Bomo_Chr3(+):13309109-13310783      View in EpiBrowser

Full name

tRNA-dihydrouridine(47) synthase [NAD(P)(+)]      

Alternative Name

tRNA-dihydrouridine synthase 3

Location in the cell

Nuclear   Reliability : 2.359

CDS

ATGAGAATAACAGATGTAAAATCGGAAAAACTCATAGAGGCCGTTAAGAAGAGACCGGCGTTGTATAATAAAAGTGACACTATGTATTACTGTCAGAAAAAGAACAAAATCAAATTGTGGATCGAAGTCTGCCAAGAAGTGTTCAGTAATTGGGAGCAAATGTCAGCACACGAAAAAGTTGAACTGCGCCACGAAATACTAAAACGCTGGAAGAGCCTCCGAACGTGCTTCTCAAGGGAACTATCGTTACAGAAGAAAGAGAAACGCAGCCTCGAAATCGATCATGAACCGATTAAAAGACGTAAAAAGTACGAATACTTTGGTTTGATGTCCTTTTTACTTCACCCGGACGCAATAGGTGAATTCGAAATAACGAAAGAGACAGACGAAGAGTCCTCTGATCCTTTGGATTGTATGAAAACTGAGATTTACGACGAGGGACAAACATCTAAAGTAGAAATAGTTAATGAAAGCGTCAACAATCAGTTTCAACCGTTCTACGAACGAAATGAAAACGTTGACGAGAAGATTCTGGAAATATTAAAAGAAATGAAGAAAGATGAATGCGACGAGGACAGACAGTTTATGTTGTCATTAGTTCCAAGCTTTCGGAAATTAAATGATAAGCAGAAGTTTGAAGCTAGAATAGGAATGTTAAAGGTCCTACAAGAGATAACGTTTCAGGAGAAAGAGACTCTATGA

Protein

MRITDVKSEKLIEAVKKRPALYNKSDTMYYCQKKNKIKLWIEVCQEVFSNWEQMSAHEKVELRHEILKRWKSLRTCFSRELSLQKKEKRSLEIDHEPIKRRKKYEYFGLMSFLLHPDAIGEFEITKETDEESSDPLDCMKTEIYDEGQTSKVEIVNESVNNQFQPFYERNENVDEKILEILKEMKKDECDEDRQFMLSLVPSFRKLNDKQKFEARIGMLKVLQEITFQEKETL

Cofactor

FMN

Similarity

Belongs to the dus family. Dus3 subfamily.

Uniprot

H9JHS6   A0A2A4IZR8   A0A2H1W8X3   A0A067RA73   A0A2S2NEL4   A0A1L8FUL7   + More
A0A067QVH3   A0A1B6DML8   A0A194QNL3   A0A0N0BFW2   A0A0L7R227   A0A026WD33   D6WRU3   F4WMC5   A0A158P282   A0A195BR61   A0A195F3Q1   A0A151XC39   A0A2S2QKM5   A0A0J7L3L1   A0A212F8H6   A0A310SQK1   A0A212FBS8   A0A195DC77   A0A2A3ERT0   A0A088AEC2   J9KU42   A0A2S2PS33   A0A151IFB9   A0A154P6K1   A0A0P4W9X1   A0A0P4W354   E2AWC0   S4P5P6   A0A0N5D5I8   A0A194QLR2   A0A1B6JUW1   A0A194QMN5   A0A2A4J5L3   A0A2H1WCZ7   A0A194Q210   A0A1E1WAP8   A0A1I8QBW5   A0A1E1W082   A0A2A4K4Y9   A0A0N0PC80   A0A0P4WL80   J9EDY0   A0A0L0BVE8   A0A3P7E1U8   N6U963   A0A2W1BS85   A0A067QMQ0   A0A0R3R2M1   A0A0H5S1L7   A0A2H1X0E4   A0A0A9WF21   A0A212FPD0   A0A1E1WMV5   A0A044V964   A0A3P6U100   A0A182EJB9   A0A0N4TX01   A0A1B6CC07   A0A2A4K541   A0A2H1WP32   A0A2H1WG94   A0A0L7KQU0   A0A2H1WWQ0   A0A146KXI5   A0A0A9XAN0   A0A212F723   A0A0A9X5S0  

EC Number

1.3.1.-

Pubmed

19121390    24845553    27762356    26354079    24508170    30249741    + More
18362917    19820115    21719571    21347285    22118469    20798317    23622113    26850696    26108605    23537049    28756777    17885136    25401762    26823975    22919073    26227816   

EMBL

BABH01029498    NWSH01004566    PCG64918.1    ODYU01007093    SOQ49555.1    KK852602    + More
KDR20478.1    GGMR01002773    MBY15392.1    CM004476    OCT75290.1    KK853328    KDR08446.1    GEDC01010406    JAS26892.1    KQ461191    KPJ07113.1    KQ435794    KOX73672.1    KQ414666    KOC64878.1    KK107261    QOIP01000012    EZA53972.1    RLU16330.1    KQ971351    EFA06435.1    GL888217    EGI64769.1    ADTU01001164    KQ976418    KYM89451.1    KQ981855    KYN34807.1    KQ982315    KYQ57858.1    GGMS01009116    MBY78319.1    LBMM01000937    KMQ97188.1    AGBW02009720    OWR50045.1    KQ761662    OAD57183.1    AGBW02009279    OWR51189.1    KQ980989    KYN10515.1    KZ288192    PBC34400.1    ABLF02030014    GGMR01019594    MBY32213.1    KQ977799    KYM99596.1    KQ434827    KZC07471.1    GDRN01106646    GDRN01106645    JAI57540.1    GDRN01106643    JAI57541.1    GL443280    EFN62280.1    GAIX01008457    JAA84103.1    UYYF01004606    VDN05797.1    KQ461196    KPJ06467.1    GECU01004715    JAT02992.1    KQ458860    KPJ04746.1    NWSH01003192    PCG66814.1    ODYU01007817    SOQ50907.1    KQ459582    KPI99034.1    GDQN01006974    JAT84080.1    GDQN01010705    JAT80349.1    NWSH01000176    PCG78720.1    KQ460651    KPJ13044.1    GDRN01021545    JAI67801.1    ADBV01004300    EJW80661.1    JRES01001388    KNC23209.1    UYWW01001533    VDM10647.1    APGK01035269    KB740923    ENN78240.1    KZ149935    PZC77191.1    KK853142    KDR10746.1    UZAG01019009    VDO41994.1    LN856534    CRZ22603.1    ODYU01012021    SOQ58104.1    GBHO01040141    GBHO01040140    GBHO01040139    GDHC01012787    GDHC01010302    GDHC01004453    JAG03463.1    JAG03464.1    JAG03465.1    JAQ05842.1    JAQ08327.1    JAQ14176.1    AGBW02003328    OWR55560.1    GDQN01002878    JAT88176.1    CMVM020000255    UYRW01003313    VDK88653.1    UZAD01013389    VDN94591.1    GEDC01026463    JAS10835.1    NWSH01000149    PCG79034.1    ODYU01010020    SOQ54829.1    ODYU01008462    SOQ52093.1    JTDY01007070    KOB65480.1    ODYU01011631    SOQ57499.1    GDHC01019159    GDHC01006188    JAP99469.1    JAQ12441.1    GBHO01029489    JAG14115.1    AGBW02009942    OWR49530.1    GBHO01029486    JAG14118.1   

Proteomes

UP000005204    UP000218220    UP000027135    UP000186698    UP000053240    UP000053105    + More
UP000053825    UP000053097    UP000279307    UP000007266    UP000007755    UP000005205    UP000078540    UP000078541    UP000075809    UP000036403    UP000007151    UP000078492    UP000242457    UP000005203    UP000007819    UP000078542    UP000076502    UP000000311    UP000046394    UP000276776    UP000053268    UP000095300    UP000004810    UP000093561    UP000037069    UP000270924    UP000019118    UP000050602    UP000006672    UP000024404    UP000271087    UP000077448    UP000038020    UP000278627    UP000037510   

PRIDE

H9JHS6   

Pfam

PF10545   MADF_DNA_bdg        + More
PF02944   BESS
PF13499   EF-hand_7
PF01207   Dus

Interpro

IPR006578   MADF-dom        + More
IPR004210   BESS_motif       
IPR039353   TF_Adf1       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR018247   EF_Hand_1_Ca_BS       
IPR018517   tRNA_hU_synthase_CS       
IPR001269   tRNA_hU_synthase       
IPR035587   DUS-like_FMN-bd       
IPR013785   Aldolase_TIM       
IPR000571   Znf_CCCH       

SUPFAM

SSF47473   SSF47473       

Gene 3D

3.20.20.70    

CDD

cd00051  EFh
cd02801  DUS_like_FMN

ProteinModelPortal

H9JHS6   A0A2A4IZR8   A0A2H1W8X3   A0A067RA73   A0A2S2NEL4   A0A1L8FUL7   + More
A0A067QVH3   A0A1B6DML8   A0A194QNL3   A0A0N0BFW2   A0A0L7R227   A0A026WD33   D6WRU3   F4WMC5   A0A158P282   A0A195BR61   A0A195F3Q1   A0A151XC39   A0A2S2QKM5   A0A0J7L3L1   A0A212F8H6   A0A310SQK1   A0A212FBS8   A0A195DC77   A0A2A3ERT0   A0A088AEC2   J9KU42   A0A2S2PS33   A0A151IFB9   A0A154P6K1   A0A0P4W9X1   A0A0P4W354   E2AWC0   S4P5P6   A0A0N5D5I8   A0A194QLR2   A0A1B6JUW1   A0A194QMN5   A0A2A4J5L3   A0A2H1WCZ7   A0A194Q210   A0A1E1WAP8   A0A1I8QBW5   A0A1E1W082   A0A2A4K4Y9   A0A0N0PC80   A0A0P4WL80   J9EDY0   A0A0L0BVE8   A0A3P7E1U8   N6U963   A0A2W1BS85   A0A067QMQ0   A0A0R3R2M1   A0A0H5S1L7   A0A2H1X0E4   A0A0A9WF21   A0A212FPD0   A0A1E1WMV5   A0A044V964   A0A3P6U100   A0A182EJB9   A0A0N4TX01   A0A1B6CC07   A0A2A4K541   A0A2H1WP32   A0A2H1WG94   A0A0L7KQU0   A0A2H1WWQ0   A0A146KXI5   A0A0A9XAN0   A0A212F723   A0A0A9X5S0  

KEGG

101737675    no KO assigned | (RefSeq) uncharacterized LOC101737675

GO

GO:0005634   GO:0003677   GO:0005667   GO:0005509   GO:0017150   GO:0050660   GO:0046872   GO:0046983   GO:0005515   GO:0004725   GO:0016311   GO:0016791   GO:0006418   GO:0006334   GO:0003779   GO:0016021  

PANTHER

PTHR12243  

Subcellular location

Nucleus  

Length:

233

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00533

Exp number, first 60 AAs:

0.00012

Total prob of N-in:

0.23144

outside

1  -  233

 

 

Pi

349.087493

Theta

213.545456

Tajima's D

2.040236

CLR

0

CSRT

0.888205589720514

Interpretation

Uncertain