Gene

KWMTBOMO01546

Pre Gene Modal

BGIBMGA014615

Annotation

PREDICTED:_zinc_finger_BED_domain-containing_protein_4-like_[Vollenhovia_emeryi]

Location

Bomo_Chr3(+):13169739-13171638      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.797

CDS

ATGTTGCATTCTTTTACAGGTACAATTGTGACTCCGTTGCAACAAGCCAAAAAACAACTTTCGTTAGAGGAAGTAATACAAAAAGAAAAGAAGTGGGATACTAACAACTCTAATTCAAAAAAGATTGACAAACTCATTGGCGAAATGATAGCGCTTCAAAATTTACCTTTTAGCTTTGTGGAAGGACTTGGATTTCGTCGTCTCATACAAGAGTTAGCACCGAAGTATAATTTTAGGGGACGACATTTTTTTACTGATTTCGTGTGCAATGAGCTATACATAAAACTTGCTGCAAAAGTTAAAGAATTAATTGAAAAATATGATTATAAGTCGTTCACTACTGATATTTGGACAGATCCCAGCTCAGGCGTTTCTTTGCTTAGCCTAACTTGCCACGGAGTATCAGAAAACTTTGAACGATCGTCAATTGTGTTAAAATGCGAGACTTTTGATGACCGTCATACTAGTGATATCATTGCAGAAAAATTTAACACAATGCTTGCTGAATGGAATATTTCAAATGAAAAAGTGCATTGCATGATACGAGATGAAGGCTCTAATATGAAAAGAGGGATGCGATTAGCATTGCTAAATGATTTAGATTGTACCGTTCATAAGTTACAAATCGTTATACGGCATGGTTTACGATCGCAGGAAAGCATAGAAGACGTCAAACAAAAATGTAAGAAAATTATTTCTCATTTTAACCATTCAACCATTGCTCAAAAGCAACTTGAAAAAATTCAAGACAGACTTAATCAACCACATCTTAAAGTATTCCAGGATTGTGTGACGCGCTGGAACAGCACGTTCTACATGTTTGAGCGTTTTATGAAGATAAAAGATGCATTAAGTCTTTATGCCAATGATCATAATATTGAATCAATTTTGCCTGAAGAGTGGAAAGTAATAGAATGCTGTCTTGAAGTATTGAAACCGTTTGAAGAAGCCACTCGTGAAATGAGCAGCTCTCAAGCACTCATATCATCTGTGATTCCTATCATACAAATGCTTTTGAAAAAACTTGACGTCTATTTAACAAAACCACGAGAAAGTGATAGTATTCGGTTGGCAGTTTCTAATCTGAAATCACAATTTTCAGCGAAATTTTCTTCTTTGGAAGATAACAACTTATATGCAATTTCCACATATTTAGATCCTCGCTATAAGCATAAATTTTTCAAACCAGTCACCGAAGAAAAAATAAAAGATGAAATAATAAAGATGGTGAATGATCCTGTCGTGCCTGATTCTCCTAAGTCGCCGGCGGAAAAAACAAAAAGAATGAGAATGGGAGATTCTCTCGATCCTGAACCAGGAACATCCAGTATGAGTAAGAAGACTTGCTTAAAAAGCGATCTTGCCATGATGTTAGGTTCATCGAGCGAAGATGAAGGTGAAGGAGAACCGGACAACAGTAGCCCCGATGCTCTTCTCCGCAAAGAATTAGTTATTTATCGTAACAAAAAAAGACTAGATTTAGATGAAAATCCACTTAATTGGTGGAAAGTTAACCGTTGTGAATTTAAAATTCTCTCCAAATTAGCATGCAGATATTTATCACCTCCACCAGCCAGTGTTCCCAGCGAACAACTATTTAGTGGAGCTGGGTTAATATATAATCCACTAAGAAACAGGTTGGAAGCTGAGAAGGCTGCAATATTGCTATTTATTAAATATAATTCACCAATCTTTAACTTTAATTATTAA

Protein

MLHSFTGTIVTPLQQAKKQLSLEEVIQKEKKWDTNNSNSKKIDKLIGEMIALQNLPFSFVEGLGFRRLIQELAPKYNFRGRHFFTDFVCNELYIKLAAKVKELIEKYDYKSFTTDIWTDPSSGVSLLSLTCHGVSENFERSSIVLKCETFDDRHTSDIIAEKFNTMLAEWNISNEKVHCMIRDEGSNMKRGMRLALLNDLDCTVHKLQIVIRHGLRSQESIEDVKQKCKKIISHFNHSTIAQKQLEKIQDRLNQPHLKVFQDCVTRWNSTFYMFERFMKIKDALSLYANDHNIESILPEEWKVIECCLEVLKPFEEATREMSSSQALISSVIPIIQMLLKKLDVYLTKPRESDSIRLAVSNLKSQFSAKFSSLEDNNLYAISTYLDPRYKHKFFKPVTEEKIKDEIIKMVNDPVVPDSPKSPAEKTKRMRMGDSLDPEPGTSSMSKKTCLKSDLAMMLGSSSEDEGEGEPDNSSPDALLRKELVIYRNKKRLDLDENPLNWWKVNRCEFKILSKLACRYLSPPPASVPSEQLFSGAGLIYNPLRNRLEAEKAAILLFIKYNSPIFNFNY

Uniprot

A0A195CSM2   A0A151IT39   A0A0K2UKK7   A0A146RS35   A0A147AJ08   A0A146RQH4   + More
A0A2I4CTA0   A0A147APY6   A0A0F8D0Q5   A0A1S3QJL3   A0A3P8RUH3   A0A1X7TWE0   A0A1A7WUH8   A0A226DS44   A0A2D0Q696   A0A1A8RA88   A0A1W5BHM2   A0A1A8MBN7   A0A226EYK5   A0A2D0S1U2   Q1RL61   A0A3B4T513   A0A151XD51   A0A195DWG9   F4X137   A0A195FNX1   A0A3P8Q7N8   A0A195B7A8   A0A146XIY7   A0A146RIE5   A0A1X7TME1   A0A2G8KSC6   I3JN37   A0A267DML7   A0A267FRP1   A0A1I8HKR4   A0A267FB62   A0A267EES3   Q29JX4   A0A0R3NVG3   B4GL01   A0A1W4UBL7   A0A1I8GRW1   T2MI81   B4NZY5   A0A267G036   A0A0B7AQ71   A0A1I8H5R9   A0A1I8GK26   A0A0B7ARZ4   A0A0J9QXC8   A0A3B4UFH4   B4KJV4   B4Q5A3   B4LRG6   X2JDF6   Q9VM61   D8FT38   B3MKS4   A0A3B4XPZ3   B3N670   H2ZWC6   B4HY06   A0A1A8D420   A0A1A8V6T2   A0A1W3JCQ0   F6RZD9   J9KBT0   A0A1X7SRE6   A0A1X7TGY6   H3A927   S4R9F0   A0A1X7UFA9   A0A1X7UCW0   B4N063   H3ADV8   A0A1A8UJB2   K7EWR4   B4JEE7   A0A0A1XSV1   X1XTH2   A0A0T6AT01   A0A3B0K6B5   A0A147BKH3  

Pubmed

25835551    16519883    21719571    29023486    25186727    26392545    + More
15632085    17994087    24065732    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    9215903    12481130    15114417    17381049    25830018    29652888   

EMBL

KQ977306    KYN03640.1    KQ981039    KYN10133.1    HACA01021391    HACA01021392    + More
CDW38753.1    GCES01115325    JAQ70997.1    GCES01007926    JAR78397.1    GCES01115935    JAQ70387.1    GCES01005816    JAR80507.1    KQ040999    KKF32028.1    HADW01008192    SBP09592.1    LNIX01000013    OXA47487.1    HAEH01015525    SBS02975.1    HAEF01013094    SBR54253.1    LNIX01000001    OXA62653.1    BR000173    FAA00204.1    KQ982294    KYQ58301.1    KQ980204    KYN17255.1    GL888525    EGI59848.1    KQ981387    KYN42012.1    KQ976574    KYM80140.1    GCES01044280    JAR42043.1    GCES01118161    JAQ68161.1    MRZV01000399    PIK50913.1    AERX01058949    NIVC01003616    PAA50521.1    NIVC01000871    PAA75622.1    NIVC01003823    NIVC01003153    NIVC01002876    NIVC01002354    NIVC01001487    NIVC01001190    NIVC01000568    NIVC01000406    NIVC01000396    NIVC01000200    PAA49642.1    PAA52988.1    PAA54653.1    PAA58604.1    PAA67370.1    PAA70996.1    PAA80764.1    PAA83771.1    PAA83921.1    PAA88205.1    NIVC01002200    PAA60051.1    CH379062    EAL32837.2    KRT04996.1    CH479184    EDW37317.1    HAAD01005594    CDG71826.1    CM000157    EDW87812.2    NIVC01000639    PAA79363.1    HACG01035892    CEK82757.1    NIVC01000027    PAA93487.1    HACG01035891    CEK82756.1    CM002910    KMY88661.1    CH933807    EDW12557.1    CM000361    EDX04036.1    KMY88660.1    CH940649    EDW64636.1    AE014134    AHN54210.1    AAF52464.1    AHN54209.1    BT125060    ADK27787.1    CH902620    EDV31605.2    CH954177    EDV59157.2    AFYH01189987    CH480818    EDW51936.1    HADZ01021964    SBP85905.1    HAEJ01014486    SBS54943.1    EAAA01002059    ABLF02014501    AFYH01198111    CH963920    EDW77998.1    AFYH01233643    HAEJ01007957    SBS48414.1    AGCU01140969    CH916368    EDW03667.1    GBXI01000181    JAD14111.1    ABLF02011642    LJIG01022898    KRT78170.1    OUUW01000006    SPP81549.1    GEGO01004462    JAR90942.1   

Proteomes

UP000078542    UP000078492    UP000192220    UP000087266    UP000265080    UP000007879    + More
UP000198287    UP000221080    UP000261420    UP000075809    UP000007755    UP000078541    UP000265100    UP000078540    UP000230750    UP000005207    UP000215902    UP000095280    UP000001819    UP000008744    UP000192221    UP000002282    UP000009192    UP000000304    UP000008792    UP000000803    UP000007801    UP000261360    UP000008711    UP000008672    UP000001292    UP000008144    UP000007819    UP000245300    UP000007798    UP000007267    UP000001070    UP000268350   

PRIDE

Q9VM61   

Pfam

PF05699   Dimer_Tnp_hAT        + More
PF02892   zf-BED
PF00096   zf-C2H2
PF05485   THAP
PF14949   ARF7EP_C
PF05903   Peptidase_C97
PF04937   DUF659

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR003656   Znf_BED       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR037220   BED_dom       
IPR013087   Znf_C2H2_type       
IPR029264   ARF7EP_C       
IPR006612   THAP_Znf       
IPR008580   PPPDE_dom       
IPR042266   PPPDE_sf       
IPR007021   DUF659       

SUPFAM

SSF53098   SSF53098        + More
SSF57667   SSF57667       
SSF140996   SSF140996       

Gene 3D

3.90.1720.30    

ProteinModelPortal

A0A195CSM2   A0A151IT39   A0A0K2UKK7   A0A146RS35   A0A147AJ08   A0A146RQH4   + More
A0A2I4CTA0   A0A147APY6   A0A0F8D0Q5   A0A1S3QJL3   A0A3P8RUH3   A0A1X7TWE0   A0A1A7WUH8   A0A226DS44   A0A2D0Q696   A0A1A8RA88   A0A1W5BHM2   A0A1A8MBN7   A0A226EYK5   A0A2D0S1U2   Q1RL61   A0A3B4T513   A0A151XD51   A0A195DWG9   F4X137   A0A195FNX1   A0A3P8Q7N8   A0A195B7A8   A0A146XIY7   A0A146RIE5   A0A1X7TME1   A0A2G8KSC6   I3JN37   A0A267DML7   A0A267FRP1   A0A1I8HKR4   A0A267FB62   A0A267EES3   Q29JX4   A0A0R3NVG3   B4GL01   A0A1W4UBL7   A0A1I8GRW1   T2MI81   B4NZY5   A0A267G036   A0A0B7AQ71   A0A1I8H5R9   A0A1I8GK26   A0A0B7ARZ4   A0A0J9QXC8   A0A3B4UFH4   B4KJV4   B4Q5A3   B4LRG6   X2JDF6   Q9VM61   D8FT38   B3MKS4   A0A3B4XPZ3   B3N670   H2ZWC6   B4HY06   A0A1A8D420   A0A1A8V6T2   A0A1W3JCQ0   F6RZD9   J9KBT0   A0A1X7SRE6   A0A1X7TGY6   H3A927   S4R9F0   A0A1X7UFA9   A0A1X7UCW0   B4N063   H3ADV8   A0A1A8UJB2   K7EWR4   B4JEE7   A0A0A1XSV1   X1XTH2   A0A0T6AT01   A0A3B0K6B5   A0A147BKH3  

PDB

6DX0     E-value=1.58881e-10,     Score=160

KEGG

NA   

GO

GO:0003677   GO:0046983   GO:0003676   GO:0005515   GO:0004725   GO:0016311   GO:0016791   GO:0006418   GO:0006334   GO:0003779   GO:0016021  

Length:

569

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01404

Exp number, first 60 AAs:

0.00689

Total prob of N-in:

0.00087

outside

1  -  569

 

 

Pi

362.702771

Theta

185.661775

Tajima's D

3.289851

CLR

0.11194

CSRT

0.988200589970501

Interpretation

Possibly Balancing Selection