Gene

KWMTBOMO01521

Annotation

PREDICTED:_putative_nuclease_HARBI1_[Linepithema_humile]

Location

Bomo_Chr3(-):12816491-12817978      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.919 Nuclear   Reliability : 3.359

CDS

ATGGCTGAGTGGAATGAAGACACTGATTCTGATATTGAAGATTTAGAAATTCTCAATGACTTCAATTCGTATTTTAACAGACCTTATCTAGTCAGACCAAGAGAAAACAATTTCGTTAAGTGGGACGATACGGAGTTTATACGTCGTTTTCGTGTATCTAAGAATACAGCTTTTACGATTTTAGAAGAAATTGCTAATGACATATCACACCCCACAAATCGGAATCATGCATTGTCAGCGTGTAACCAGTTATTATTAACCTTGCGTTATTATGCTACTGGATGCATGCAAATTACTGTTGGCGATTTCAGTGGTGTTCACCAAACGACAGCAGGAAAAGCTATTAAAAAAGTTACCGAAGCGATTGCATCAAGACGATGCCGATATATAATGCTGCAAGATTCTGAAGAAGACAAAAGGAAACATCAGAATGGATTCTACAATATGGCTAGGTTTCCTCTAGTGTATGGAGCCCTTGATTGTACTCATATACGGATTCAATCACCAGGTGGACAAAATGCAGAGTGTTTTAGGAATAGGAAAGGCTATTTTTCCTTAAATACTCAGGCAGTTTGCAATTCAGACTTGAAATTTTCGAATATTGTGGCTAGATGGCCGGGGGCAAGCCATGGCAGTACCATTTTTCAAAATAGCAGACTCTGTGCTATTTTTGAATCAGGTCAGATGGGCCAACTAGTTCTTCTCGGTGATGCTGGATATCCGAACAAAAAATATCTATTGACACCTCTACAAAATCCTGTCACAGAAGCTGAGAAACTATACAATGAGTCTCATATACGAACTCGGAATTGTATAGAGAGGGCATTTGGCATATGGAAGAGACGGTTTCCAGTTTTGTCATTGGGAATTAAGACCAAAGTTGAACTGGTACAAGATATCATTGTTGCAACAGCCATTTTACACAACTTGTGTATCAAGCATAATGATGTCATGCCTAACTTAGATGTTAACTTAGAAAATATCATTGATGTAACTGGCAGTGATAACAACCAAGATACCACCCTCAGCAGCAATTACAGCAACAATAGTTATAGAAGGCAAATGTTAATTGACAATTACTTTAGCAGTTTACAATAG

Protein

MAEWNEDTDSDIEDLEILNDFNSYFNRPYLVRPRENNFVKWDDTEFIRRFRVSKNTAFTILEEIANDISHPTNRNHALSACNQLLLTLRYYATGCMQITVGDFSGVHQTTAGKAIKKVTEAIASRRCRYIMLQDSEEDKRKHQNGFYNMARFPLVYGALDCTHIRIQSPGGQNAECFRNRKGYFSLNTQAVCNSDLKFSNIVARWPGASHGSTIFQNSRLCAIFESGQMGQLVLLGDAGYPNKKYLLTPLQNPVTEAEKLYNESHIRTRNCIERAFGIWKRRFPVLSLGIKTKVELVQDIIVATAILHNLCIKHNDVMPNLDVNLENIIDVTGSDNNQDTTLSSNYSNNSYRRQMLIDNYFSSLQ

Uniprot

A0A1Y1MC35   N6UD62   A0A1Y1MZ45   U4U2V2   X1XI09   A0A1Y1KRW4   + More
A0A1Y1M7D0   J9JTM0   J9JZ87   A0A1Y1MBC4   J9KF22   X1X0S1   A0A1I8NJZ2   C4WUD0   J9LXS6   J9LL64   A0A2S2NS44   A0A2P8Z014   J9LYS1   A0A1Y1KQW0   A0A0A9ZIH6   A0A1Y1MXP7   A0A1Y1KLA7   J9KLH0   A0A0J7K466   J9JJW2   J9M2S7   J9LUG4   J9JXP4   J9KWE0   A0A0L7LT10   J9L1W5   J9M943   J9L523   A0A2S2NKK2   J9JM90   J9K8M3   A0A1B6KEC0   N6TYP6   N6TRS6   X1WR39   D6WYB2   A0A0A9YXL9   A0A1Y1KFZ4   J9L0T4   C4WVD2   X1WZQ8   J9M4Q3   J9KQN6   S4PD89   A0A1Y1M620   X1XKK1   A0A2R2MN13   A0A2A4IXD7   J9KK24   A0A0L7L248   H9JKZ1   A0A1S3JPJ3   J9LWR9   D7EKQ7   U4U4Y9   J9KAY9   J9JZI3   A0A0L7L4N7   A0A3Q0J0W5   J9LCM8   A0A2S2Q8E2   J9M1Z2   A0A2R5LJM8   J9LUU4   A0A146L3K0   J9L1A7   A0A2H1VXT4   J9KLG9   A0A158NUI4   A0A1Y1N6P0   U4UCR2   A0A2P8YDT7   A0A0A9X6M5   A0A1E1WP29   A0A1E1VZ84   A0A0J7KNS8   A0A2A4IV58   A0A1E1W4G1   A0A3L8DKW7   J9M4N8  

Pubmed

28004739    23537049    25315136    29403074    25401762    26227816    + More
18362917    19820115    26823975    23622113    19121390    21347285    30249741   

EMBL

GEZM01035464    GEZM01035462    JAV83213.1    APGK01040149    KB740975    ENN76582.1    + More
GEZM01017851    GEZM01017841    GEZM01017840    JAV90428.1    KB631844    ERL86663.1    ABLF02012281    ABLF02058185    GEZM01078171    GEZM01078169    GEZM01078168    GEZM01078162    GEZM01078161    GEZM01078158    GEZM01078157    GEZM01078155    GEZM01078153    GEZM01078152    GEZM01078149    GEZM01078144    GEZM01078140    GEZM01078137    JAV62920.1    GEZM01038551    JAV81614.1    ABLF02029655    ABLF02030019    ABLF02036739    GEZM01038550    JAV81615.1    ABLF02061340    ABLF02020738    ABLF02006541    ABLF02042859    AK341014    BAH71500.1    ABLF02003846    ABLF02019988    ABLF02066411    GGMR01007355    MBY19974.1    PYGN01000260    PSN49845.1    ABLF02012895    GEZM01076717    JAV63704.1    GBHO01000839    JAG42765.1    GEZM01017837    GEZM01017836    GEZM01017835    JAV90434.1    GEZM01080383    JAV62179.1    ABLF02022234    ABLF02058482    LBMM01014280    KMQ85248.1    ABLF02011428    ABLF02011053    ABLF02024993    ABLF02024998    ABLF02025000    ABLF02008545    ABLF02016012    ABLF02055237    JTDY01000151    KOB78582.1    ABLF02019815    ABLF02019816    ABLF02017542    ABLF02035722    GGMR01005102    MBY17721.1    ABLF02016431    ABLF02006612    GEBQ01030196    JAT09781.1    APGK01005289    KB736163    ENN83248.1    APGK01006027    KB736544    ENN83189.1    ABLF02063305    KQ971356    EFA09128.1    GBHO01005857    GDHC01007230    JAG37747.1    JAQ11399.1    GEZM01088054    JAV58326.1    ABLF02003216    AK341464    BAH71852.1    ABLF02008641    ABLF02011808    ABLF02016385    ABLF02034876    GAIX01003761    JAA88799.1    GEZM01039795    GEZM01039794    GEZM01039793    GEZM01039792    GEZM01039791    GEZM01039790    GEZM01039789    JAV81183.1    ABLF02020736    NWSH01005652    PCG64078.1    ABLF02038239    JTDY01003471    KOB69505.1    BABH01011318    ABLF02033619    DS497765    EFA11633.1    KB632031    ERL88142.1    ABLF02015906    ABLF02007265    JTDY01002978    KOB70380.1    ABLF02010299    GGMS01004279    MBY73482.1    ABLF02028680    GGLE01005627    MBY09753.1    ABLF02007356    GDHC01016852    JAQ01777.1    ABLF02008686    ODYU01004776    SOQ45014.1    ABLF02017360    ADTU01026491    GEZM01016480    JAV91267.1    KB632204    ERL90113.1    PYGN01000674    PSN42418.1    GBHO01028298    JAG15306.1    GDQN01002346    JAT88708.1    GDQN01011014    GDQN01002039    JAT80040.1    JAT89015.1    LBMM01005020    KMQ91894.1    NWSH01007141    PCG63072.1    GDQN01011578    GDQN01009283    JAT79476.1    JAT81771.1    QOIP01000007    RLU20812.1    ABLF02015087   

Proteomes

UP000019118    UP000030742    UP000007819    UP000095301    UP000245037    UP000036403    + More
UP000037510    UP000007266    UP000085678    UP000218220    UP000005204    UP000079169    UP000005205    UP000279307   

PRIDE

H9JKZ1   

Pfam

PF13359   DDE_Tnp_4        + More
PF13843   DDE_Tnp_1_7
PF16087   DUF4817
PF05699   Dimer_Tnp_hAT
PF00400   WD40

Interpro

IPR027806   HARBI1_dom        + More
IPR026103   HARBI1_animal       
IPR029526   PGBD       
IPR032135   DUF4817       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       

SUPFAM

SSF53098   SSF53098        + More
SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A1Y1MC35   N6UD62   A0A1Y1MZ45   U4U2V2   X1XI09   A0A1Y1KRW4   + More
A0A1Y1M7D0   J9JTM0   J9JZ87   A0A1Y1MBC4   J9KF22   X1X0S1   A0A1I8NJZ2   C4WUD0   J9LXS6   J9LL64   A0A2S2NS44   A0A2P8Z014   J9LYS1   A0A1Y1KQW0   A0A0A9ZIH6   A0A1Y1MXP7   A0A1Y1KLA7   J9KLH0   A0A0J7K466   J9JJW2   J9M2S7   J9LUG4   J9JXP4   J9KWE0   A0A0L7LT10   J9L1W5   J9M943   J9L523   A0A2S2NKK2   J9JM90   J9K8M3   A0A1B6KEC0   N6TYP6   N6TRS6   X1WR39   D6WYB2   A0A0A9YXL9   A0A1Y1KFZ4   J9L0T4   C4WVD2   X1WZQ8   J9M4Q3   J9KQN6   S4PD89   A0A1Y1M620   X1XKK1   A0A2R2MN13   A0A2A4IXD7   J9KK24   A0A0L7L248   H9JKZ1   A0A1S3JPJ3   J9LWR9   D7EKQ7   U4U4Y9   J9KAY9   J9JZI3   A0A0L7L4N7   A0A3Q0J0W5   J9LCM8   A0A2S2Q8E2   J9M1Z2   A0A2R5LJM8   J9LUU4   A0A146L3K0   J9L1A7   A0A2H1VXT4   J9KLG9   A0A158NUI4   A0A1Y1N6P0   U4UCR2   A0A2P8YDT7   A0A0A9X6M5   A0A1E1WP29   A0A1E1VZ84   A0A0J7KNS8   A0A2A4IV58   A0A1E1W4G1   A0A3L8DKW7   J9M4N8  

KEGG

105842814    K23222 nuclease HARBI1 [EC:3.1.-.-] | (RefSeq) uncharacterized LOC105842814

GO

GO:0016021   GO:0046983  

Length:

365

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0416000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02235

outside

1  -  365

 

 

Pi

198.355352

Theta

183.946214

Tajima's D

0.246483

CLR

131.14499

CSRT

0.437978101094945

Interpretation

Uncertain