Silkworm Genome Informatics Database

Gene

KWMTBOMO01513

Pre Gene Modal

BGIBMGA014212

Annotation

PREDICTED:_ski_oncogene_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr3(+):12642070-12643317 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.275

CDS

ATGGACGTGGTGACGCCGCACATCACCTCCGTACTGAAGACATACCAGGCCAGCGCGCCGCGCAGCCTGCAGGGTCCGGGCGGCCGAGCCCCGCGCGGCCCCGATCCGCCGCCGCCTCCGCCACCGCCCGCCGCGCCGCCCATCCTTCTGGCCGCTGACGCCGAACTGGGTGAGCGCGGCGAGACTCGCCTCGAAGGAGAACCCATCTCCTGCTTCAGCGTCGGCGGCGAACGGCGGCTGTGCTTGCCGCAGATCCTAACTTCTGTGCTTACGGATTTCACATTAGAGCAAATAAATCGCGTGTGTGACGAATTACAAATATACTGTTCGCGCTGCACCCCGGAGCAGCTGCACGAACTGAAGTCGACAGGAGTGTTACCGAGGTCGGCGCCCTCGTGCGGACTCATCACGCAGACGGACGCAGAGCGGCTGTGCGCGGCGCTGCTGCATGCCCCGGCTGCCTCGCGTCCCCACAAGCTACCCGGCTTCCGTGTATATCACGAGTGTTTTGGAGGAGCACGGGGTGTGTGTTCACCCGAGGCGGGTCTGGTGCAGTGCTCAGAGTGCCGAGCGCTGTATGTGCCGCGCCGGTTCGTGTGCCATTCCCACGAGACGGAGAACCGCACCTGCCATTGGGGCTTTGACTCGTCCCACTGGCGTCGGTTTTTACTGGTCGCGGACGAGGAACAGGATCAGGAGAAGTGCATCGCGCTCCTGGACGATCTCGCCGCCAGAGACGAGGCTGCCGCGCTCGCTCCGCTGCCTTTGAAGCATCATCATCAGCTGCCCTTGAAAAGAAAACAGATTCCATTAAGAAATATTTCAACTGTCTTTCATATTGAATGTAGAGAATCAAGTAGAGTCATGACCGTTTGGCCATGTGATGATGAGTTAGTACCTTCCAGAACATTCGGAGACTAA

Protein

MDVVTPHITSVLKTYQASAPRSLQGPGGRAPRGPDPPPPPPPPAAPPILLAADAELGERGETRLEGEPISCFSVGGERRLCLPQILTSVLTDFTLEQINRVCDELQIYCSRCTPEQLHELKSTGVLPRSAPSCGLITQTDAERLCAALLHAPAASRPHKLPGFRVYHECFGGARGVCSPEAGLVQCSECRALYVPRRFVCHSHETENRTCHWGFDSSHWRRFLLVADEEQDQEKCIALLDDLAARDEAAALAPLPLKHHHQLPLKRKQIPLRNISTVFHIECRESSRVMTVWPCDDELVPSRTFGD

Uniprot

H9JXE6 A0A2H1WVG8 A0A0N1I7Q4 A0A0A9Y356 A0A146LDV2 A0A146MG04 + More
A0A1Y1MFT2 A0A139WDV4 A0A1B6DVA3 N6TN17

Pubmed

19121390 26354079 25401762 26823975 28004739 18362917 + More
19820115 23537049

EMBL

BABH01043567 ODYU01011355 SOQ57048.1 KQ460941 KPJ10590.1 GBHO01017030 + More
JAG26574.1 GDHC01013939 JAQ04690.1 GDHC01000657 JAQ17972.1 GEZM01035550 GEZM01035549 JAV83185.1 KQ971357 KYB26057.1 GEDC01007696 JAS29602.1 APGK01058751 KB741291 ENN70595.1

Proteomes

UP000005204 UP000053240 UP000007266 UP000019118

PRIDE

H9JXE6

Pfam

PF02437 Ski_Sno + More
PF08782 c-SKI_SMAD_bind

Interpro

IPR014890   c-SKI_SMAD4-bd_dom        + More
IPR023216   Tscrpt_reg_SKI_SnoN
IPR003380   SKI/SNO/DAC
IPR037000   Ski_DNA-bd_sf
IPR010919   SAND-like_dom_sf
IPR009061   DNA-bd_dom_put_sf

SUPFAM

SSF46955 SSF46955 + More
SSF63763 SSF63763

Gene 3D

3.10.260.20 3.10.390.10

ProteinModelPortal

H9JXE6 A0A2H1WVG8 A0A0N1I7Q4 A0A0A9Y356 A0A146LDV2 A0A146MG04 + More
A0A1Y1MFT2 A0A139WDV4 A0A1B6DVA3 N6TN17

PDB

1SBX E-value=4.13892e-29, Score=318

KEGG

101744016 no KO assigned | (RefSeq) ski oncogene

GO

GO:0046332 GO:0030512 GO:0030514 GO:0045596 GO:0048666 GO:0006729 GO:0006468 GO:0004930 GO:0006420 GO:0004812 GO:0006418 GO:0006334 GO:0003779 GO:0016021

PANTHER

PTHR10005

Length:

306

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02470

outside

1 - 306

Pi

10.594763

Theta

20.897213

Tajima's D

-1.468585

CLR

142.854902

CSRT

0.064296785160742

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics