SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01497
Pre Gene Modal
BGIBMGA009054
Annotation
PREDICTED:_zinc_finger_CCHC_domain-containing_protein_24-like_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.099
 

Sequence

CDS
ATGTCGCCGACTGCGATCAGCGCCGATCTGCCGCAGTGGTGCGGAAAGGCTGAAGGCTGTCCACAAGCCCTACTCGGCTGGCTATACTTGACCCACGATCAGAACGATCAGTGGATGCCAGGCTCGGCATGGGGTCCGTTACCGACTGCGGCACCACGGTCCGCCCCACCACCATCGGACGACACCAGTTCTCTCGTGGAACAGCTGACGGCGTTGTCCTTACGTCGGCCACCTCGGCCCCCACCACCAGCTTACATGTGTCACTTGTGCTTCAAAAAAGGGCATTACATTGGAGATTGTCCGCAGGCTCGTCCAAAAGGCGAGGGTCTGACTCCGTATCAAGGCAAGAAGCGATGCTTCGGGGAGTACAAGTGTCCGAAATGTAAGCGCAAGTGGATGAGCGGCAACTCTTGGGCCAACAACGGACAGGAATGCATCAAATGTCGCATTAATGTGTTCCCTCACAAACAGCGACCTCTAGAGAAACCAGACGGGCTGGACGTGAGTGATCAATCGAAGATACACCCTCAGCATTTGTGCCAAAAGTGCCGTTCTTTAGGCTATTATTGCCGCAGGGAGTATTGA
Protein
MSPTAISADLPQWCGKAEGCPQALLGWLYLTHDQNDQWMPGSAWGPLPTAAPRSAPPPSDDTSSLVEQLTALSLRRPPRPPPPAYMCHLCFKKGHYIGDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWANNGQECIKCRINVFPHKQRPLEKPDGLDVSDQSKIHPQHLCQKCRSLGYYCRREY

Summary

Pfam
PF17180   zf-3CxxC_2        + More
PF13696   zf-CCHC_2
Interpro
IPR027377   Znf-3CxxC        + More
IPR033446   Zcchc24_Znf-3CxxC       
IPR025829   Zn_knuckle_CX2CX3GHX4C       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF57756   SSF57756       

Ontologies

Topology

Length:
194
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00098
Exp number, first 60 AAs:
0.00098
Total prob of N-in:
0.05907
outside
1  -  194
 
 

Population Genetic Test Statistics

Pi
196.765979
Theta
157.87496
Tajima's D
1.116433
CLR
0.00584
CSRT
0.695315234238288
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号