Gene

KWMTBOMO01493

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr3(-):12402677-12404509      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.429

CDS

ATGCAGCTCGGTCGCCCCCTCAACCGCGAACCAGATACGAGGACCATGGTGGATTGGAAGAAGCTGGGCACGTGCTTAGCTGACACCGCTCCACCAATCCTCCCTTGCGGCCCGGATTCAACTCCATCCCCCGAGGACACCGTCGAATCCATAAATATCTTCACTGATCACGTCTCGACGGCGATCACAAGATCTTCAAAGCAAGTTGATGTGGAGGACTGCTTCCACCGCATCAGACTTTCCCCCGATCTTAGGGACCTCGTTAGAGTTAGGAACGCGGCAATCCGGGCCTACGATCGATATCCCACGGATTCAAACCGGACTCGGATGCGTCGCTTACAGCGGGAGGTCAAATCCCGCTTGAGCGACGCCCGAAACGAAAACTGGGATAGTTATTTAAAAGAACTCGCGCCCACTCACCAAGCATACTGGCGACTAGCTAGGACCCTCAAGTCCGAAACTATCGTCACTATGCCGCCTCTCGTACGCCCCTCAGGCCAATCACCGGCTTACGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTCGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTTCCGAGGTCAAGGAGGCGATCGATAGCCTGCAACCACGGAAAGCTCCCGGCTCCGACGGCATCCGCAACCGCGCGCTTAAACTGTTACCAGCCCAACTGATAACGATGTTGGCCACCATATTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCGGACGTTATCGGCATACACAAGCCGGGCAAACCGAAGAACGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGGCAAACTATACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTATCCGCGAATAAAATTCTTATAGACGAGCAGTTTGGATTCCGCGCCAGACACTCGTGCGTCCATCAAGTGCACCGCCTCACGGAGCACATCTTACTAGGGCTGAACAGGCGGAAACCCATTCCGACAGGAGCCCTCTTCTTCGATATAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCAATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTTAGTTTGTATATCAACGATATACCCTGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCCTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCGGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCCGACTAG

Protein

MQLGRPLNREPDTRTMVDWKKLGTCLADTAPPILPCGPDSTPSPEDTVESINIFTDHVSTAITRSSKQVDVEDCFHRIRLSPDLRDLVRVRNAAIRAYDRYPTDSNRTRMRRLQREVKSRLSDARNENWDSYLKELAPTHQAYWRLARTLKSETIVTMPPLVRPSGQSPAYDDDDKAELLADALQEQCTTSTQHADPEHTEFVDREVERRASLPPSDALPPITTSEVKEAIDSLQPRKAPGSDGIRNRALKLLPAQLITMLATILNAAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFQYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPWSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPD

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A139W8G9   + More
A0A1Y1NA23   A0A139WA11   D7EM17   A0A2S2QEE0   A0A2S2PR14   A0A2S2Q352   Q07995   A0A2S2PWA8   A0A2H8U0H5   D7GYA5   A0A023EYS8   A0A2S2PPK8   V9H092   V5GNJ2   J9KKL3   A0A2J7R7D0   J9KC83   A0A1B6J5Z9   A0A3N5Z7I3   X1WXE6   A0A023EZE6   V5GNF3   J9KLB1   A0A224XF24   J9LC21   A0A2S2PA10   J9M522   A0A2S2NGV8   K7IN67   A0A2J7Q4F7   A0A2J7RM10   A0A2J7R4B7   A0A2J7RIW7   A0A0C9RJA4   X1WN18   A0A2J7Q059   A0A2J7RB54   A0A2S2N629   A0A2J7PMP6   A0A2J7Q0Q6   A0A2J7Q2R1   A0A2J7QUJ9   X1WZH0   A0A2J7PMP9   A0A2J7R2E1   A0A2S2P698   A0A2J7RS77   A0A2J7RPU2   A0A2J7RE85   A0A2J7QFL0   A0A2J7R6U1   A0A2S2Q383   A0A2J7RKP3   A0A2S2QJM7   A0A2S2PBB4   A0A2J7QR37   A0A2S2R9D4   A0A2S2NPG3   R4FPB9   A0A2J7QY69   A0A2J7PBY3   A0A023F700   A0A2S2PX53   X1WPZ3   J9JS95   X1WLB2   A0A2M4CV52   A0A2J7R8R8   A0A2J7Q5G9   A0A2J7QEZ4   A0A2S2N6C8  

Pubmed

10333566    26354079    10380107    18362917    19820115    28004739    + More
8387152    25474469    9061921    30086797    20075255   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ973342    KXZ75569.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    KQ973412    EFA12510.2    GGMS01006359    MBY75562.1    GGMR01019198    MBY31817.1    GGMS01002955    MBY72158.1    S59870    AAB26437.2    GGMS01000625    MBY69828.1    GFXV01007093    MBW18898.1    KQ973363    EFA13335.2    GBBI01004395    JAC14317.1    GGMR01018716    MBY31335.1    L79944    AAB04627.1    GALX01005299    JAB63167.1    ABLF02029306    ABLF02029314    ABLF02060138    NEVH01006736    PNF36716.1    ABLF02033757    GECU01013097    JAS94609.1    RPOV01000134    RPJ78669.1    ABLF02016634    GBBI01004571    JAC14141.1    GALX01005359    JAB63107.1    ABLF02040174    ABLF02040183    ABLF02055266    GFTR01008038    JAW08388.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMR01013409    MBY26028.1    ABLF02024246    GGMR01003407    MBY16026.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01007443    PNF35684.1    NEVH01003017    PNF40781.1    GBYB01008290    JAG78057.1    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01020071    PNF21969.1    NEVH01005938    PNF38077.1    GGMR01000005    MBY12624.1    NEVH01023962    PNF17612.1    NEVH01019964    PNF22161.1    NEVH01019080    PNF22876.1    NEVH01010546    PNF32261.1    ABLF02034467    NEVH01023961    PNF17613.1    NEVH01007838    PNF34986.1    GGMR01012305    MBY24924.1    NEVH01000280    PNF43672.1    NEVH01001355    PNF42855.1    NEVH01005277    PNF39135.1    NEVH01014858    PNF27387.1    NEVH01006754    PNF36554.1    GGMS01002992    MBY72195.1    NEVH01002716    PNF41415.1    GGMS01008766    MBY77969.1    GGMR01014053    MBY26672.1    NEVH01011985    PNF31054.1    GGMS01017365    MBY86568.1    GGMR01006408    MBY19027.1    GAHY01000238    JAA77272.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    GBBI01001699    JAC17013.1    GGMS01000737    MBY69940.1    ABLF02024191    ABLF02066493    ABLF02028535    ABLF02028545    ABLF02042518    ABLF02057746    GGFL01004957    MBW69135.1    NEVH01006721    PNF37225.1    NEVH01017559    PNF23833.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    GGMR01000086    MBY12705.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000002358   

PRIDE

Q93137    Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF10551   MULE
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A139W8G9   + More
A0A1Y1NA23   A0A139WA11   D7EM17   A0A2S2QEE0   A0A2S2PR14   A0A2S2Q352   Q07995   A0A2S2PWA8   A0A2H8U0H5   D7GYA5   A0A023EYS8   A0A2S2PPK8   V9H092   V5GNJ2   J9KKL3   A0A2J7R7D0   J9KC83   A0A1B6J5Z9   A0A3N5Z7I3   X1WXE6   A0A023EZE6   V5GNF3   J9KLB1   A0A224XF24   J9LC21   A0A2S2PA10   J9M522   A0A2S2NGV8   K7IN67   A0A2J7Q4F7   A0A2J7RM10   A0A2J7R4B7   A0A2J7RIW7   A0A0C9RJA4   X1WN18   A0A2J7Q059   A0A2J7RB54   A0A2S2N629   A0A2J7PMP6   A0A2J7Q0Q6   A0A2J7Q2R1   A0A2J7QUJ9   X1WZH0   A0A2J7PMP9   A0A2J7R2E1   A0A2S2P698   A0A2J7RS77   A0A2J7RPU2   A0A2J7RE85   A0A2J7QFL0   A0A2J7R6U1   A0A2S2Q383   A0A2J7RKP3   A0A2S2QJM7   A0A2S2PBB4   A0A2J7QR37   A0A2S2R9D4   A0A2S2NPG3   R4FPB9   A0A2J7QY69   A0A2J7PBY3   A0A023F700   A0A2S2PX53   X1WPZ3   J9JS95   X1WLB2   A0A2M4CV52   A0A2J7R8R8   A0A2J7Q5G9   A0A2J7QEZ4   A0A2S2N6C8  

PDB

6AR3     E-value=0.0106189,     Score=92

KEGG

105842435    no KO assigned | (RefSeq) uncharacterized LOC105842435

GO

GO:0003964   GO:0004519  

Length:

513

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.817979999999998

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00982

outside

1  -  513

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

96.489045

CSRT

0

Interpretation

Uncertain