Gene

KWMTBOMO01492

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr3(-):12374231-12376399      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.532 Nuclear   Reliability : 2.014

CDS

ATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCACGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTGCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGTGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTATAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCATATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGTGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTTAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCCAGTAGAAACAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGTATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGTCAATCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATTTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCTCGCACGCACATAGACACCCTTCAATCTCTACAATCCCGCTTTTGCAGGTTAGCCGTCGGAGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCTATACAGAAATACATGAAGTCAGCGTCGGAACGGTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTAGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTCGCACTAGACGCCTTCAGCTCTAGGAGCAGGCTTAGGGACCTCGGTAACCGTACTCGTCGAACTCGACAAAGAGTTCGCCGTGCAACCTAA

Protein

MRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLTAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDVLPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSRSRLRDLGNRTRRTRQRVRRAT

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A0N0PA09   + More
A0A1Y1NA23   V5GNF3   A0A139WA11   V5GNJ2   A0A139W8G9   A0A2S2PR14   J9KKL3   X1WLB2   X1WMU5   X1WWC4   A0A3N5Z7I3   A0A2S2Q352   A0A023EYS8   A0A2S2QEE0   A0A2S2PPK8   A0A224XF24   Q07995   A0A2H8U0H5   A0A2J7RS81   A0A2S2PH29   A0A2S2PX53   A0A2S2N814   A0A2J7R7D0   J9KC83   A0A2J7Q627   A0A023F6S4   A0A1Y1M7E9   A0A2S2NGV8   A0A1Y1LKN6   A0A2S2RAN7   J9KCZ4   A0A2S2QJM7   A0A2J7R8R8   X1WZH0   A0A2J7PQB5   X1WN18   J9LC21   A0A2J7PDM0   A0A069DZC5   A0A0C9RJA4   A0A023EZE6   A0A2S2QTZ8   A0A2J7PVX3   A0A069DW01   X1WNI2   A0A2J7Q059   A0A1L8DIZ6   A0A224XB44   A0A2J7QUJ9   A0A2J7RL12   A0A2J7PMP6   A0A2A4K8E7   A0A2J7RIW7   A0A2S2R9D4   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q4F7   A0A2M4BDV6   X1WTA1   K7IN67   A0A2J7QTW2   A0A2J7RB54   J9LC15   A0A2M4BD67   A0A2J7RPU2   J9M522   A0A2J7QFL0   A0A2S2Q383   Q95SX7   A0A2J7RKP3   A0A2J7R2E1   A0A2J7Q0Q6   A0A2J7PU96   O76197   A0A2J7RS77   A0A224X6U5   A0A2J7PMP9   A0A2A4K918   A0A0A9YJ00   A0A2J7R6U1   A0A2S2PBB4   A0A224XI99   A0A0J7K4E0   A0A2J7QPI2   A0A2J7QR37   A0A023F754   A0A2J7R579  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
30086797    25474469    8387152    26334808    20075255    7753626    12537569    8934517    25401762   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ459259    KPJ02068.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    GALX01005299    JAB63167.1    KQ973342    KXZ75569.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02042518    ABLF02057746    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02003961    ABLF02059872    RPOV01000134    RPJ78669.1    GGMS01002955    MBY72158.1    GBBI01004395    JAC14317.1    GGMS01006359    MBY75562.1    GGMR01018716    MBY31335.1    GFTR01008038    JAW08388.1    S59870    AAB26437.2    GFXV01007093    MBW18898.1    NEVH01000269    PNF43694.1    GGMR01016114    MBY28733.1    GGMS01000737    MBY69940.1    GGMR01000676    MBY13295.1    NEVH01006736    PNF36716.1    ABLF02033757    NEVH01017542    PNF24034.1    GBBI01001646    JAC17066.1    GEZM01038405    JAV81653.1    GGMR01003407    MBY16026.1    GEZM01053022    JAV74219.1    GGMS01017914    MBY87117.1    ABLF02008463    GGMS01008766    MBY77969.1    NEVH01006721    PNF37225.1    ABLF02034467    NEVH01022639    PNF18527.1    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01026386    PNF14434.1    GBGD01000880    JAC88009.1    GBYB01008290    JAG78057.1    GBBI01004571    JAC14141.1    GGMS01012005    MBY81208.1    NEVH01020940    PNF20481.1    GBGD01000799    JAC88090.1    ABLF02008153    ABLF02008462    ABLF02008464    NEVH01020071    PNF21969.1    GFDF01007661    JAV06423.1    GFTR01008262    JAW08164.1    NEVH01010546    PNF32261.1    NEVH01002704    PNF41489.1    NEVH01023962    PNF17612.1    NWSH01000032    PCG80497.1    NEVH01003017    PNF40781.1    GGMS01017365    MBY86568.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01018383    PNF23463.1    GGFJ01001857    MBW50998.1    ABLF02037660    NEVH01011193    PNF32021.1    NEVH01005938    PNF38077.1    ABLF02020655    ABLF02039168    ABLF02061060    GGFJ01001858    MBW50999.1    NEVH01001355    PNF42855.1    ABLF02024246    NEVH01014858    PNF27387.1    GGMS01002992    MBY72195.1    AY060438    AAL25477.1    NEVH01002716    PNF41415.1    NEVH01007838    PNF34986.1    NEVH01019964    PNF22161.1    NEVH01021205    PNF19912.1    AF012049    AAC24972.1    NEVH01000280    PNF43672.1    GFTR01008251    JAW08175.1    NEVH01023961    PNF17613.1    PCG80496.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01006754    PNF36554.1    GGMR01014053    MBY26672.1    GFTR01008256    JAW08170.1    LBMM01014395    KMQ85192.1    NEVH01012089    PNF30491.1    NEVH01011985    PNF31054.1    GBBI01001642    JAC17070.1    NEVH01007393    PNF35987.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000218220    UP000002358    + More
UP000036403   

PRIDE

Q93137    Q9XXW0    Q9BPQ0    Q95SX7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A0N0PA09   + More
A0A1Y1NA23   V5GNF3   A0A139WA11   V5GNJ2   A0A139W8G9   A0A2S2PR14   J9KKL3   X1WLB2   X1WMU5   X1WWC4   A0A3N5Z7I3   A0A2S2Q352   A0A023EYS8   A0A2S2QEE0   A0A2S2PPK8   A0A224XF24   Q07995   A0A2H8U0H5   A0A2J7RS81   A0A2S2PH29   A0A2S2PX53   A0A2S2N814   A0A2J7R7D0   J9KC83   A0A2J7Q627   A0A023F6S4   A0A1Y1M7E9   A0A2S2NGV8   A0A1Y1LKN6   A0A2S2RAN7   J9KCZ4   A0A2S2QJM7   A0A2J7R8R8   X1WZH0   A0A2J7PQB5   X1WN18   J9LC21   A0A2J7PDM0   A0A069DZC5   A0A0C9RJA4   A0A023EZE6   A0A2S2QTZ8   A0A2J7PVX3   A0A069DW01   X1WNI2   A0A2J7Q059   A0A1L8DIZ6   A0A224XB44   A0A2J7QUJ9   A0A2J7RL12   A0A2J7PMP6   A0A2A4K8E7   A0A2J7RIW7   A0A2S2R9D4   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q4F7   A0A2M4BDV6   X1WTA1   K7IN67   A0A2J7QTW2   A0A2J7RB54   J9LC15   A0A2M4BD67   A0A2J7RPU2   J9M522   A0A2J7QFL0   A0A2S2Q383   Q95SX7   A0A2J7RKP3   A0A2J7R2E1   A0A2J7Q0Q6   A0A2J7PU96   O76197   A0A2J7RS77   A0A224X6U5   A0A2J7PMP9   A0A2A4K918   A0A0A9YJ00   A0A2J7R6U1   A0A2S2PBB4   A0A224XI99   A0A0J7K4E0   A0A2J7QPI2   A0A2J7QR37   A0A023F754   A0A2J7R579  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0006313   GO:0016021  

Length:

625

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

11.76899

Exp number, first 60 AAs:

0.00209

Total prob of N-in:

0.45523

outside

1  -  625

 

 

Pi

1.462288

Theta

1.871572

Tajima's D

0.358988

CLR

106.114649

CSRT

0.52112394380281

Interpretation

Uncertain