SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01482  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009045
Annotation
chloride_intracellular_channel_isoform_1_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.128 Nuclear   Reliability : 1.77
 

Sequence

CDS
ATGGACCTATATCTGTTGGCTGAGCTTAAGACAATCAGTTTAAAGGTGACAACAGTGGACATGCAGAAGCCGCCCCCAGATTTCCGCACCAACTTCGAAGCGACACACCCGCCCATACTGATCGACAATGGGCTGGCGATACTTGAGAACGAGAAAATCGAACGGCACATCATGAAGTCCGTGCCAGGGGGACACAACCTATTCGTGCAGGACAAGGAGGTCGCGTCTCTAATCGAGAACCTGTATTCAAAACTGAAGCTGGTGCTGGTTCGCAAAGATGAACAGAAATCAGCGGCGTTACGAGCTCATCTCGGACGCATCGATGGACTTCTAGAACGCAGGGAGACCAGGTTCCTAACGGGCGACACTATGTGCTGTTTCGACTGCGAGCTGATGCCGAGGTTGCAGCACATCCGCGTCGCCGGGAAGTACTTCGTGGACTTCGAAATACCGACGACGTTCCGTGCTTTGTGGCGTTACATGTATCACATGTATCAGCTTGACGCGTTCACGCAGAGCTGTCCCGCCGACCAGGACATCATCAACCACTACAAACTCCAGCAGGCATTGAAAATGAAGAAACATGAAGAACTTGAAACACCGACGTTCACGACCTCAATCCCCATCGACGTCAACGAACTGAATAACGCAGAGTAA
Protein
MDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKIERHIMKSVPGGHNLFVQDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTTFRALWRYMYHMYQLDAFTQSCPADQDIINHYKLQQALKMKKHEELETPTFTTSIPIDVNELNNAE

Summary

EMBL
DQ443324    ABF51413.1    BABH01029607    BABH01029608    BABH01029609    BABH01029610    + More
GDQN01010343    JAT80711.1    AK403190    BAM19619.1    NWSH01000342    PCG77268.1    ODYU01008333    SOQ51833.1    GDQN01010834    JAT80220.1    MF319739    ASJ26453.1    UFQS01000116    UFQT01000116    SSW99950.1    SSX20330.1    CP012528    ALC48728.1    GDHF01017106    JAI35208.1    KA646133    AFP60762.1    GFDF01008949    JAV05135.1    CH902635    EDV33843.1    GDHF01002822    JAI49492.1    GAKP01010828    JAC48124.1    CH379064    EAL31953.2    CH479200    EDW29817.1    OUUW01000011    SPP86827.1    GAMC01002863    GAMC01002861    JAC03693.1    GBXI01011885    GBXI01001658    JAD02407.1    JAD12634.1    CH477463    EAT40533.1    GFDL01000770    JAV34275.1    JRES01001701    KNC20857.1    GAMC01002864    GAMC01002862    JAC03692.1    CH933811    EDW06481.1    DQ440421    ABF18454.1    GAPW01003523    GAPW01003522    JAC10076.1    GFDG01002455    JAV16344.1    CM000366    EDX17860.1    CH480835    EDW48813.1    CH940651    EDW65202.1    CH916376    EDV95253.1    AJWK01026964    AJWK01026965    AJWK01026966    AJWK01026967    AJWK01026968    AE014298    AY058721    AAF48326.1    AAL13950.1    AGB95379.2    CM000162    EDX01628.1    GAPW01003317    JAC10281.1    GEZM01067925    JAV67324.1    CH954180    EDV47148.2    CH964239    EDW82606.1    APCN01004732    GANO01002479    JAB57392.1    CCAG010003383    GFDF01008935    JAV05149.1    EZ422459    ADD18735.1    JXJN01012463    AAAB01008811    EAA45365.4    EGK96265.1    EGK96266.1    EGK96267.1    EGK96269.1    EGK96270.1    GFDL01000807    JAV34238.1    CVRI01000054    CRK99976.1    GGFK01006276    MBW39597.1    GGFL01004342    MBW68520.1    GGFM01000720    MBW21471.1    GGFK01005956    MBW39277.1    AXCM01000149    EGK96268.1    GDAI01001434    JAI16169.1    GGFK01006201    MBW39522.1    CRK99975.1    GGFL01004341    MBW68519.1    GGFM01000726    MBW21477.1    GGFK01005880    MBW39201.1    GGFJ01008790    MBW57931.1    GECZ01016417    JAS53352.1    DS235150    EEB12541.1    LJIG01016153    KRT81455.1    DQ443325    ABF51414.1    AK417341    BAN20556.1    GECZ01012619    JAS57150.1    GECZ01022328    JAS47441.1    DS232492    EDS42605.1    GEBQ01014479    JAT25498.1    GBHO01015620    GBRD01003255    GDHC01018708    JAG27984.1    JAG62566.1    JAP99920.1    GEMB01000734    JAS02404.1    GFTR01004223    JAW12203.1    GECL01003563    JAP02561.1    GBGD01002599    JAC86290.1    GDKW01001940    JAI54655.1    ACPB03005682    ACPB03005683    ACPB03005684    ACPB03005685    GAHY01001678    JAA75832.1    NEVH01016943    PNF25068.1    GDHF01026383    JAI25931.1    ATLV01013379    KE524855    KFB37848.1    GBBI01000657    JAC18055.1   
Interpro
IPR036282   Glutathione-S-Trfase_C_sf        + More
IPR036249   Thioredoxin-like_sf       
SUPFAM
SSF47616   SSF47616        + More
SSF52833   SSF52833       
PDB
2YV7     E-value=4.44167e-106,     Score=979

Ontologies

Topology

Length:
218
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00706
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.01615
outside
1  -  218
 
 

Population Genetic Test Statistics

Pi
216.095267
Theta
172.287655
Tajima's D
0.985262
CLR
0.703045
CSRT
0.655417229138543
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
25044914 YMTEIFGYDR 96.15 6e-14
27102218 KHEEIETPTFTTSIPIDVNEINNAE 96.15 6e-14
28467696 YMTEIFGYDR 96.15 6e-14
28556443 SVPGGHNLFVQDK 100.00 6e-10
28556443 FLTGDTMCCFDCELMPR 100.00 6e-10
28556443 EVASLIENLYSK 100.00 3e-08
28556443 EVASLIENLYSK 100.00 3e-08
28556443 FLTGDTMCCFDCELMPR 100.00 8e-04
28556443 IDGLLER 100.00 8e-04
26822097 GIVSPTISR 100.00 0.001
25044914 VTSYPSTR 100.00 0.001
28467696 VTTMDAEIEFAIQQTTTGK 100.00 0.001
28556443 TNFEATHPPILIDNGLAILENEK 100.00 0.001
28556443 GLVSPTLSR 100.00 0.001
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