Gene

KWMTBOMO01481  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009114

Annotation

PREDICTED:_pre-mRNA-splicing_factor_Syf2_[Plutella_xylostella]

Location

Bomo_Chr3(-):12127467-12128299      View in EpiBrowser

Full name

Pre-mRNA-splicing factor Syf2      

Location in the cell

Nuclear   Reliability : 2.76

CDS

ATGAATACTCAAAAATGTGAACAAAATAAGGAAGCGAGAGAAAAAACATTTGTCGAAAAACAGGCTGAACGTATGCAGAGACTGCGTAACTTACACACCGCCCGAAACGAAGCTAGGACACAAAACCACCAAGAAGTCGTAGCAGAAGAGGCTAGGAACAAGCTACCAACGAACTATGAAGCTAAACGGCGCCAGGCAGAGTGGTTAGTAGAGGATCAGAAGAAACGAGAAGAAGCAGAAACAGAAGGCAAAAACTACGATCGAGTCAAATTGTTGAATATTTCTGCGATAGAAGCAGAGCGACTCGAACGTAAAAAAAAGAAAAAGAACCCAGACCAAGGGTTCTCGACGTATGAACATGCCACAATACGACAATACAACAGGTTAGTGAAAAACATGCCACCAGCGGATATGGAACGGTATGAGAAACAAAAGCAAAAGTATGGTGAAGCATTCTATGGAGGCCCCAACGTCATCATACATGGAATGCACGAAGATCGTAAAGAGGCAGTAGACAAAATGGTTGATGATCTGGAGGGTCAGATTGCAAAGAGAACTAAATATTCGAGGAGACGAATTCATAATGATGATGCTGATATTGATTATATCAACGAGAGGAATGCTAAATTCAATAAGAAATTGGAAAGGTTTTATGGAGAGCATACTGCTGAAATAAAACAAAATTTGGAGAGGGGCACTGCCATTTAG

Protein

MNTQKCEQNKEAREKTFVEKQAERMQRLRNLHTARNEARTQNHQEVVAEEARNKLPTNYEAKRRQAEWLVEDQKKREEAETEGKNYDRVKLLNISAIEAERLERKKKKKNPDQGFSTYEHATIRQYNRLVKNMPPADMERYEKQKQKYGEAFYGGPNVIIHGMHEDRKEAVDKMVDDLEGQIAKRTKYSRRRIHNDDADIDYINERNAKFNKKLERFYGEHTAEIKQNLERGTAI

Description

Involved in pre-mRNA splicing as component of the spliceosome.

Subunit

Identified in the spliceosome C complex.

Similarity

Belongs to the SYF2 family.

Keywords

Coiled coil   Complete proteome   mRNA processing   mRNA splicing   Nucleus   Reference proteome   Spliceosome  

Feature

chain  Pre-mRNA-splicing factor Syf2

Uniprot

H9JHW6   A0A2A4JZN2   A0A1E1WQB7   A0A194Q397   A0A194RLB4   A0A0L7KRR9   + More
A0A2H1W1C6   A0A212FBH6   S4PB45   A0A1Y1N9B3   A0A1W4XM98   D6WVD0   N6U4E9   A0A2M3ZJU3   A0A182FTS0   A0A182IR92   U5EZ02   U4UGM6   A0A2M4AVV7   A0A2M4BYM1   A0A182K5R9   A0A182PWG8   A0A1S4H495   A0A182ULA6   A0A182WUU6   A0A182LPY8   A0A182HFV5   Q7Q8W7   A0A084WAX5   A0A034VEL4   A0A0K8V8E6   A0A1A9VC92   A0A1B0G7W9   A0A1A9XXV8   A0A1B0ARB7   A0A1B0ADD7   W5JLI3   W8C5R9   A0A182VA71   A0A182YF79   A0A0A1XFS6   A0A182VT73   A0A182M0C7   A0A1Y9H236   A0A2J7RRN4   A0A0L0BY13   A0A182R190   A0A182RF42   T1P8K9   A0A023EKU8   A0A1I8MWB2   Q178H1   A0A1I8Q4B1   A0A0C9RAV0   B0WLX7   A0A069DXM7   A0A1Q3FE01   J3JY42   A0A310SFM8   A0A067QM59   A0A1B6GRV3   A0A1B6JFG8   A0A2R7VX34   A0A0A9YLK1   B4KUC2   A0A0M4EI26   A0A026W3Q1   B4J9E3   A0A154P1V8   B4GGA2   Q28XK6   A0A2A3E9L4   V9IMK3   A0A087ZSF1   B4LPI5   R4FPY5   A0A0J7KRF5   B4MRJ5   A0A195BI95   A0A158P313   E2BQ63   A0A336KM11   E2AUL2   A0A1A9X2G7   B3MIL1   A0A195DN70   F4X5E1   E9IPD8   A0A0M9AAP2   B4HN09   B3NN44   A0A151WYQ7   A0A1S3DIN4   A0A3B0JNE2   B4QAN8   Q9V5Q4   A0A1W4VCY0   B4P827   A0A151K1U7   A0A0L7RCX0  

Pubmed

19121390    26354079    26227816    22118469    23622113    28004739    + More
18362917    19820115    23537049    12364791    20966253    24438588    25348373    20920257    23761445    24495485    25244985    25830018    26108605    24945155    26483478    25315136    17510324    26334808    22516182    24845553    25401762    26823975    17994087    24508170    30249741    15632085    21347285    20798317    21719571    21282665    22936249    10731132    12537572    17550304   

EMBL

BABH01029612    NWSH01000342    PCG77269.1    GDQN01001811    JAT89243.1    KQ459562    + More
KPI99818.1    KQ459989    KPJ18623.1    JTDY01006678    KOB65785.1    ODYU01005710    SOQ46827.1    AGBW02009318    OWR51092.1    GAIX01004756    JAA87804.1    GEZM01012091    JAV93215.1    KQ971357    EFA08544.1    APGK01039918    KB740975    ENN76470.1    GGFM01007979    MBW28730.1    GANO01001675    JAB58196.1    KB632186    ERL89756.1    GGFK01011605    MBW44926.1    GGFJ01009018    MBW58159.1    AAAB01008933    APCN01005585    EAA09888.4    ATLV01022274    KE525331    KFB47369.1    GAKP01017231    GAKP01017230    GAKP01017229    JAC41721.1    GDHF01017474    JAI34840.1    CCAG010021505    JXJN01002308    ADMH02001074    ETN64168.1    GAMC01001572    JAC04984.1    GBXI01004490    JAD09802.1    AXCM01001028    NEVH01000599    PNF43501.1    JRES01001254    KNC24179.1    AXCN02002042    KA644982    AFP59611.1    JXUM01146283    GAPW01003803    KQ570143    JAC09795.1    KXJ68445.1    CH477363    EAT42614.1    GBYB01013609    JAG83376.1    DS231992    EDS30775.1    GBGD01002780    JAC86109.1    GFDL01009261    JAV25784.1    BT128166    AEE63127.1    KQ764883    OAD54270.1    KK853180    KDR10190.1    GECZ01004603    JAS65166.1    GECU01010113    JAS97593.1    KK854143    PTY12067.1    GBHO01011626    GBRD01015001    GDHC01010875    JAG31978.1    JAG50825.1    JAQ07754.1    CH933808    EDW09718.1    CP012524    ALC40667.1    KK107447    QOIP01000001    EZA50715.1    RLU27118.1    CH916367    EDW01424.1    KQ434796    KZC05812.1    CH479183    EDW35522.1    CM000071    KZ288340    PBC27741.1    JR053226    AEY61881.1    CH940648    EDW61244.1    ACPB03005682    GAHY01000664    JAA76846.1    LBMM01003949    KMQ92957.1    CH963850    EDW74734.1    KQ976467    KYM84092.1    ADTU01007669    GL449698    EFN82182.1    UFQS01000579    UFQT01000579    SSX05092.1    SSX25454.1    GL442829    EFN62859.1    CH902619    EDV38087.1    KQ980713    KYN14350.1    GL888716    EGI58297.1    GL764503    EFZ17548.1    KQ435711    KOX79403.1    CH480816    EDW47313.1    CH954179    EDV56564.1    KQ982649    KYQ53013.1    OUUW01000001    SPP74161.1    CM000362    CM002911    EDX06543.1    KMY92862.1    AE013599    BT022631    CM000158    EDW90074.2    KQ977935    LKEX01009507    KYM98609.1    KYM98611.1    KYN50100.1    KQ414615    KOC68654.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000037510    UP000007151    + More
UP000192223    UP000007266    UP000019118    UP000069272    UP000075880    UP000030742    UP000075881    UP000075885    UP000075902    UP000076407    UP000075882    UP000075840    UP000007062    UP000030765    UP000078200    UP000092444    UP000092443    UP000092460    UP000092445    UP000000673    UP000075903    UP000076408    UP000075920    UP000075883    UP000075884    UP000235965    UP000037069    UP000075886    UP000075900    UP000069940    UP000249989    UP000095301    UP000008820    UP000095300    UP000002320    UP000027135    UP000009192    UP000092553    UP000053097    UP000279307    UP000001070    UP000076502    UP000008744    UP000001819    UP000242457    UP000005203    UP000008792    UP000015103    UP000036403    UP000007798    UP000078540    UP000005205    UP000008237    UP000000311    UP000091820    UP000007801    UP000078492    UP000007755    UP000053105    UP000001292    UP000008711    UP000075809    UP000079169    UP000268350    UP000000304    UP000000803    UP000192221    UP000002282    UP000078542    UP000053825   

PRIDE

H9JHW6    Q28XK6    Q9V5Q4   

Pfam

PF08231   SYF2

Interpro

IPR013260   mRNA_splic_SYF2       

ProteinModelPortal

H9JHW6   A0A2A4JZN2   A0A1E1WQB7   A0A194Q397   A0A194RLB4   A0A0L7KRR9   + More
A0A2H1W1C6   A0A212FBH6   S4PB45   A0A1Y1N9B3   A0A1W4XM98   D6WVD0   N6U4E9   A0A2M3ZJU3   A0A182FTS0   A0A182IR92   U5EZ02   U4UGM6   A0A2M4AVV7   A0A2M4BYM1   A0A182K5R9   A0A182PWG8   A0A1S4H495   A0A182ULA6   A0A182WUU6   A0A182LPY8   A0A182HFV5   Q7Q8W7   A0A084WAX5   A0A034VEL4   A0A0K8V8E6   A0A1A9VC92   A0A1B0G7W9   A0A1A9XXV8   A0A1B0ARB7   A0A1B0ADD7   W5JLI3   W8C5R9   A0A182VA71   A0A182YF79   A0A0A1XFS6   A0A182VT73   A0A182M0C7   A0A1Y9H236   A0A2J7RRN4   A0A0L0BY13   A0A182R190   A0A182RF42   T1P8K9   A0A023EKU8   A0A1I8MWB2   Q178H1   A0A1I8Q4B1   A0A0C9RAV0   B0WLX7   A0A069DXM7   A0A1Q3FE01   J3JY42   A0A310SFM8   A0A067QM59   A0A1B6GRV3   A0A1B6JFG8   A0A2R7VX34   A0A0A9YLK1   B4KUC2   A0A0M4EI26   A0A026W3Q1   B4J9E3   A0A154P1V8   B4GGA2   Q28XK6   A0A2A3E9L4   V9IMK3   A0A087ZSF1   B4LPI5   R4FPY5   A0A0J7KRF5   B4MRJ5   A0A195BI95   A0A158P313   E2BQ63   A0A336KM11   E2AUL2   A0A1A9X2G7   B3MIL1   A0A195DN70   F4X5E1   E9IPD8   A0A0M9AAP2   B4HN09   B3NN44   A0A151WYQ7   A0A1S3DIN4   A0A3B0JNE2   B4QAN8   Q9V5Q4   A0A1W4VCY0   B4P827   A0A151K1U7   A0A0L7RCX0  

PDB

6ID1     E-value=4.7486e-46,     Score=462

KEGG

101743775    K12868 pre-mRNA-splicing factor SYF2 | (RefSeq) pre-mRNA-splicing factor Syf2

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0016853   GO:0000974   GO:0071014   GO:0071013   GO:0071006   GO:0071008   GO:0071007   GO:0000398   GO:0005634   GO:0071004   GO:0003723   GO:0071011  

PANTHER

PTHR13264  

Subcellular location

Nucleus  

Length:

235

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00555

Exp number, first 60 AAs:

0

Total prob of N-in:

0.44734

outside

1  -  235

 

 

Pi

21.499903

Theta

17.878294

Tajima's D

0.43811

CLR

0.885271

CSRT

0.500324983750812

Interpretation

Uncertain