Silkworm Genome Informatics Database

Gene

KWMTBOMO01473

Pre Gene Modal

BGIBMGA009116

Annotation

PREDICTED:_protein_atonal_homolog_8_[Papilio_xuthus]

Location

Bomo_Chr3(-):11949894-11955706 View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear Reliability : 4.226

CDS

ATGTTAGAAAGAGACGCTGGTTTTGTTTCGGGTGGCGAGGACGACGATTCATGCTCGGGACCTGCGCACTCAGATGACTCCGGAGTTCGGCTGGTGGAGTCTGAGACCCGGAACAAGCGGGAGCGGACACCCAGCCGACTCCAGCCTCCAAAGAAACGAATACGCCTCAGTTCCAGTGATGACGTGGCCAGCCCCGACAGTGACTCGCAGAACCCGTTTCGGCCGTGGTCTTTCACCGAAGAACCGCAGAGAGAGCCTTTGTCTTTAGTCAAGAAAAGCGGTGAAACTAGTCTTTTGAGGCAAAGGAGGAGACCGCTAGATCCCCCTCCGCCCCCCGTACCGCCAATTCCCCCGCCGCCCGAACCGCAAGGACTTCCGAGAGTGCCCCCTCATCCGGGAGTAATGGAGTACCCTGAAAAATCAAAACCTAGGGAGCAAAGGAATTACAAGAACATGACCCGCGAGAGACGGATAGAAGCCAATGCCAGGGAAAGGACGAGGGTCCATACCATAAGTGCGGCGTTCGACACGCTAAGGCGTTCCGTTCCCGCCTACAGCCATAACCAAAAGCTATCGAAGCTTTCGGTTTTAAGGATAGCGTGCGCGTACATTGCGGCACTTTCCGCAGTCATCGAGCCGGACAGTGACCTCAACAACGCAGTGGATAACGTGACACACACGATACACACTGAAGGAAAATTAAGAAAAAAGAAGGATGAATCTTGA

Protein

MLERDAGFVSGGEDDDSCSGPAHSDDSGVRLVESETRNKRERTPSRLQPPKKRIRLSSSDDVASPDSDSQNPFRPWSFTEEPQREPLSLVKKSGETSLLRQRRRPLDPPPPPVPPIPPPPEPQGLPRVPPHPGVMEYPEKSKPREQRNYKNMTRERRIEANARERTRVHTISAAFDTLRRSVPAYSHNQKLSKLSVLRIACAYIAALSAVIEPDSDLNNAVDNVTHTIHTEGKLRKKKDES

Uniprot

H9JHW8 A0A194Q3A1 A0A194RLB9 A0A2H1X281 A0A2A4JZS6 A0A212F1G2 + More
A0A1B0DIQ5 A0A2R7VTR1 A0A0P4VRL0

Pubmed

19121390 26354079 22118469 27129103

EMBL

BABH01029630 BABH01029631 KC118544 AGD94593.1 KQ459562 KPI99823.1 + More
KQ459989 KPJ18628.1 ODYU01012918 SOQ59460.1 NWSH01000342 PCG77276.1 AGBW02010885 OWR47578.1 AJVK01062925 KK854047 PTY10251.1 GDKW01003846 JAI52749.1

Proteomes

UP000005204 UP000053268 UP000053240 UP000218220 UP000007151 UP000092462 + More

PRIDE

H9JHW8

Pfam

PF00010 HLH

Interpro

IPR011598   bHLH_dom        + More
IPR036638   HLH_DNA-bd_sf
IPR032660   ATOH8

SUPFAM

SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00083 HLH

ProteinModelPortal

H9JHW8 A0A194Q3A1 A0A194RLB9 A0A2H1X281 A0A2A4JZS6 A0A212F1G2 + More
A0A1B0DIQ5 A0A2R7VTR1 A0A0P4VRL0

PDB

2QL2 E-value=6.96059e-05, Score=107

KEGG

101744787 K09084 atonal protein 8 | (RefSeq) ATOH8; atonal homolog 8 (Drosophila)

GO

GO:0030154 GO:0003700 GO:0046983 GO:0008528 GO:0016021 GO:0004930 GO:0006420 GO:0004812 GO:0006418 GO:0006334 GO:0003779

PANTHER

PTHR19290:SF102

Length:

241

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.70878

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06304

outside

1 - 241

Pi

34.072139

Theta

207.264881

Tajima's D

-2.43694

CLR

136.829169

CSRT

0.00129993500324984

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics