SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01469
Annotation
Uncharacterized_protein_OBRU01_02090_[Operophtera_brumata]
Location in the cell
Mitochondrial   Reliability : 2.117 Nuclear   Reliability : 1.981
 

Sequence

CDS
ATGTCGCAATTATCTGCGATTGAGGTTGCTCAAAGAAACTTGGAAGAGTGCTTCACGAAAAGAATGGCCGATCTTGAGGCACAGCTTCATGCTGGAGGGCCTGCGAAGGATACAGTCTCCAAGGTTGCGGAGGAATTCCGAACATTCCGGGAACTTATATTCTCTATGTTGAAACTTCTTCGACAGCAGATTGGTGAGTGCACTCGACTGGTTGATGCGATCGAGACCAGACATCGTCGAAAAAACCTCATCTTTCTGGGAGTCCCTGAAGTTCAAAACGAAGACTGCACCGCTGCCATCTTGGATATTTTGCATAAAAAAATGCTTCTGAATACCTCTGCTGCTGACTTCAATGTGTGTCACCGTATAGGAGCTACTAATAAGGATCATCACCGCCCAATCCTGGTCAGATTGAAATGCTTAGATACACGGATGTCGATTTGGAGGACGAAGTCCAAACTTAAAGGTTCTCCTGTGTCCATCAAGGAATTCCTTACAAAATCTCGACAGGCGGTGTTCGGCAAGAGCCGTCAGTATTTTGGTGTGCGTCAATGTTGGACGCAAGACGGGGTCATTATTATCAAGGCTGCGGATGGAAATCGTCACAGATTGACCACTATGGATGAGTTTAGCGACCTCGCAGTTAAATATCCTATTGTGGATGGTAAGCCAACATCAGCTAAGGGCAGCGTCTCTAAGGCGGCACCGGCTATCACTGTGAACTCGAAATTGCGGAAGACCTAG
Protein
MSQLSAIEVAQRNLEECFTKRMADLEAQLHAGGPAKDTVSKVAEEFRTFRELIFSMLKLLRQQIGECTRLVDAIETRHRRKNLIFLGVPEVQNEDCTAAILDILHKKMLLNTSAADFNVCHRIGATNKDHHRPILVRLKCLDTRMSIWRTKSKLKGSPVSIKEFLTKSRQAVFGKSRQYFGVRQCWTQDGVIIIKAADGNRHRLTTMDEFSDLAVKYPIVDGKPTSAKGSVSKAAPAITVNSKLRKT

Summary

EMBL
NWSH01000695    PCG74738.1    NWSH01000574    PCG75564.1    NWSH01002863    PCG67420.1    + More
NWSH01001465    PCG71162.1    PCG71163.1    NWSH01000512    PCG75926.1    KZ150083    PZC73827.1    NWSH01008089    PCG62701.1    ODYU01010789    SOQ56106.1    JTDY01000147    KOB78598.1    NWSH01000281    PCG77797.1    KZ149998    PZC75357.1    NWSH01000964    PCG73374.1    NWSH01004248    PCG65306.1    ODYU01012456    SOQ58773.1    NWSH01000800    PCG74117.1    JTDY01001444    KOB73845.1    JTDY01007405    KOB65227.1    ODYU01006869    SOQ49099.1    JTDY01015832    KOB51930.1    BABH01019446    BABH01019447    BABH01019448    BABH01019449    BABH01019450    JTDY01002460    KOB71369.1    KZ149916    PZC77943.1    JTDY01009601    KOB63242.1    JTDY01009138    KOB64057.1    JTDY01004770    KOB67785.1    JTDY01010087    KOB61249.1    KOB61251.1    NWSH01000709    PCG74665.1    JTDY01003374    KOB69654.1    KZ150731    PZC70355.1    JTDY01005020    KOB67468.1    JTDY01010801    JTDY01009435    KOB57999.1    KOB63512.1    JTDY01000235    KOB78128.1    NWSH01000981    PCG73266.1    KZ150737    PZC70349.1    NWSH01002122    PCG69097.1    NWSH01001639    PCG70611.1    ODYU01005692    SOQ46801.1    ODYU01003266    SOQ41795.1    KZ150113    PZC73314.1    JTDY01016995    KOB51870.1    JTDY01004815    JTDY01001265    KOB67717.1    KOB74342.1    JTDY01009052    KOB64154.1    JTDY01004162    KOB68510.1    NWSH01001172    PCG72268.1    NWSH01004711    PCG64730.1    GAIX01004118    JAA88442.1    AMQN01034318    KB312372    ELT87362.1    GEZM01072435    JAV65521.1    AMQN01026766    KB307322    ELT98997.1    JTDY01000521    KOB76815.1    GEBQ01005443    JAT34534.1    AMQN01039534    KB295512    ELU13084.1    AMQN01017114    KB292747    ELU17043.1    AMQN01021863    KB299252    ELU08188.1    AMQN01017617    KB293311    ELU16121.1   
Pfam
PF01582   TIR        + More
PF00027   cNMP_binding
Interpro
IPR004244   Transposase_22        + More
IPR035897   Toll_tir_struct_dom_sf       
IPR000157   TIR_dom       
IPR000595   cNMP-bd_dom       
IPR014710   RmlC-like_jellyroll       
IPR018490   cNMP-bd-like       
SUPFAM
SSF52200   SSF52200        + More
SSF51206   SSF51206       
Gene 3D

Ontologies

Topology

Length:
247
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000790000000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04278
outside
1  -  247
 
 

Population Genetic Test Statistics

Pi
413.350989
Theta
194.81543
Tajima's D
3.323539
CLR
0.38885
CSRT
0.990500474976251
Interpretation
Possibly Balancing Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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