SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01456
Pre Gene Modal
BGIBMGA008931
Annotation
PREDICTED:_ATPase_family_AAA_domain-containing_protein_2-like_isoform_X2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.83
 

Sequence

CDS
ATGGTGAAAACCCGTCGCAGTAATGGAGAGAACGGGGAGGTTGACGATGGGAATTACACTGTAAACGTCGTGGGCAGCATCTCAGATGAGAAGGTGTCTAACTGGACCCAGCGAGAGCTGAGGAGCAGTCAGTACAAAGTTACCAGGAAGATCCAGCGCTGGCCTACTAAATATCGCAAGCGTAGAACCATAAAAATGCCACGAATCGTTTTCCCTGAAAGCGATACAGACCCTGAGAAGTACTCGAGGCGTTCACGACAAGTAAGAGTGTTTTTTGCTGATGATAATGACACAACAAACAGGATCCGTCGTAGTCGAGCGCCCAGGAAGAATTACATGGAAGACAGTGAAGACAAACCAATACAGGAAAATGTCAGAAGAAGTTGCCGCAAGCGCAAACTGCTCCATCACAATTTCAACGAGAGCTGGATCACTAATGAACTAAAAGTGAAAGGATACCCAGACTTGTATGGCTTTCCTGGTTCCAGTTCATCTGATGAATTCACTTCTGGCGATGAAGCGAGAGTTTCTTCCAAGAAATTGACTCCGAATCACCCACAAACGAACACAGATGAAGACACGCAGCTGTCGAGACAGCGTCGTACTTCAGCGAGGTTCACCAACAAGAAGAATAATGGTGGTACTGAATCGGATTCAGAAGATGAAAATAATCAAACGGTTATAGAAAAGAAACCGGCCAACGGTATCGAAGTAAACAAGGCTGATGATAAGTTGATGCACGTCGACAACGGATGTAAGAGTGAAAACTTAAAGACTGAAAGAGAGACGGTGCAGGCACAGGACAGTGAGAGCAACCAACCACCCTCGAGATCTACCAGAAGGAAACCGAGAGGTAAACCGAAGAAAGACGACAGCCAGAACGAGACTGCGTCGGAGACGTCGTCGACGGAGTCCGGCAGCGAGCTGACGCTGGGCCGCCAGCCGCGCCGCTCCAAGCGCACCCGGAAGCCGCGCTCTGCTTTCGTCGAGATCGCGCCCGCAGAAACACGGGCCAGAGCAAAGACATTCACAATAAGAAAGAAACCGTACAGTTTGAGAGAGAGAAAACCAAAGATATTACGCAGGAAAACGATCAGATCACAATCGCCTTCAAGCAGCAGCACCACCAGCACCTCCAGCTCCGATACAGAAGAAGACCTCAATGTTTCTATGAAAAACAAAACGAAGGGCAGGCAAAAATCTAAATCAATGGATGATAAGAAAACAGATAGAGCTTTGAGAGATATACAGCCGGTAGAAGTCGACGGTAGCGTTAGGTTTTCATCGGTTGGCGGACTAGAAGAGCATATAAAGTGTCTCCGAGAGATGGTCTTGTTCCCCCTCATGTATCCGGACTTGTTTCAAAAGTTCAAAACTCGACCAGCTAAAGGAGTTCTGTTCCACGGCCCTCCCGGAACTGGCAAGACGTTGCTGGCGAGGGCCCTTGCTAATGAATGCAGCTTAGTGGGAGGAAGGAAGGTGGCGTTCTTCATGAGGAAAGGAGCCGATTGCTTGAAGAAATGGGTCGGCGAGAGTGAAAGACATTTGAAGTTGCTTTTCCAGCAGGCCAACAAAATGAAACCGTCTATTATATTCTTCGACGAGATCGACGCCTTAGCTCCGGTCCGCAGCGTGCGGCAGGAGCAAGTGCACACCAGCGTCGTCGGCACCCTGCTGGCTGAGATGGACGGACTCTGCGACAGGGGGGAGGTGGTGATAATAGGTGCGACGAACCGTCTGGACGCGGTGGACCCGGCGCTGCGGCGTGCGGGCCGCTTCGACCGCGAGCTGCACTTCCCGCCGCCGCACGCCGCCGCGCGCCGTGACATCCTGCACATCTACACGCGGGACTGGCAGCCGCCGCCCGCCGCGCGCACCCTCCACCACGTCGCAGATATGGCCAGCGGATATGGAGGTGCGTCCGCCACTATTGCCAATAATTAA
Protein
MVKTRRSNGENGEVDDGNYTVNVVGSISDEKVSNWTQRELRSSQYKVTRKIQRWPTKYRKRRTIKMPRIVFPESDTDPEKYSRRSRQVRVFFADDNDTTNRIRRSRAPRKNYMEDSEDKPIQENVRRSCRKRKLLHHNFNESWITNELKVKGYPDLYGFPGSSSSDEFTSGDEARVSSKKLTPNHPQTNTDEDTQLSRQRRTSARFTNKKNNGGTESDSEDENNQTVIEKKPANGIEVNKADDKLMHVDNGCKSENLKTERETVQAQDSESNQPPSRSTRRKPRGKPKKDDSQNETASETSSTESGSELTLGRQPRRSKRTRKPRSAFVEIAPAETRARAKTFTIRKKPYSLRERKPKILRRKTIRSQSPSSSSTTSTSSSDTEEDLNVSMKNKTKGRQKSKSMDDKKTDRALRDIQPVEVDGSVRFSSVGGLEEHIKCLREMVLFPLMYPDLFQKFKTRPAKGVLFHGPPGTGKTLLARALANECSLVGGRKVAFFMRKGADCLKKWVGESERHLKLLFQQANKMKPSIIFFDEIDALAPVRSVRQEQVHTSVVGTLLAEMDGLCDRGEVVIIGATNRLDAVDPALRRAGRFDRELHFPPPHAAARRDILHIYTRDWQPPPAARTLHHVADMASGYGGASATIANN

Summary

Pfam
PF17862   AAA_lid_3        + More
PF00004   AAA
PF00439   Bromodomain
Interpro
IPR001487   Bromodomain        + More
IPR003593   AAA+_ATPase       
IPR041569   AAA_lid_3       
IPR018359   Bromodomain_CS       
IPR027417   P-loop_NTPase       
IPR003960   ATPase_AAA_CS       
IPR003959   ATPase_AAA_core       
IPR036427   Bromodomain-like_sf       
SUPFAM
SSF52540   SSF52540        + More
SSF47370   SSF47370       
Gene 3D
PDB
5VCA     E-value=3.06146e-46,     Score=469

Ontologies

Topology

Length:
647
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00161
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00192
outside
1  -  647
 
 

Population Genetic Test Statistics

Pi
318.663599
Theta
199.583545
Tajima's D
2.153462
CLR
0.327142
CSRT
0.903904804759762
Interpretation
Uncertain
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