SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01447
Annotation
mariner_transposase_[Bombyx_mori]
Full name
Innexin      
Location in the cell
Nuclear   Reliability : 2.796
 

Sequence

CDS
ATGGAATTGACTCGAGAAAATTCAAGAGCGATGATTTATTATGACTTTCGAAGTGGTTTAACACAAAAACAGTGTGTTGACCGGATGATTTCTGCATTTGGTGATGAAGCCCCATCCAAAACCACAATTTATCGCTGGTTTGCTGAGTTTCAACGTGGACGTGTCAAGCTCAGTGATGATCCTCGTCAAGGTCGTCCAAAAACTGCAGTCACCCAAGAAAACGTTGATGCTGTGCGTAAGCTGATTGAGGAAGATCGACATGTGACATACCGCGAAATTCAGGCAACTTTAGACATTGGCATGAGTCAAATTCAAATAATCTTGCATGAACAATTAGGTGTAAAAAAGTTGTTTTCCCGATGGACACCGCATTCGCTCTGTGAAGAGCAAAACGCGGCTCGCGTTACTTGGTGCGTCAGAACTCTCGAAAGATTCCACGTAGGATCCTCAAATGCTGTATACAACATTTTATCAGGTGACGAATCCTGGATATACGCGTACGAACCCGAAACAAAAAACCAGACACGAGTTTGGGTGTTCGAAAATGAGTTAAAGCCAACAAAAATTGTTCGTTTACGGAGTGTTGAAAAAAAAATTGTGGCCACGTTTGTCTCCAAAACCGGCCATGTTACGACTATTCCTCTTGAGGGACAAAGAACGGTTAATGCAGAATGGTATGCTAGCATTTGTTTGCCACAGGTCGTTTCTGAACTCCGTAAAGAGAACTGCAACCGCCGCATCATCCTCCATCACGACAATGCGAGTTCTCACACCGCGCACAGAACAAAAGAGTTTTTAGAGCAAGAAAACATAGAATTAGTAGACCATCCGCCGTACAGCCCCGACCTAAGCCCTACTGATTTCTATACTTTCCCTAAAATAAAGAATAAATTGCGTGGACAGAGATTTTCATCACCTGAAGAAGCTGTGGACGCCTACAAAACGGCCATTTTGGAGACCCCAACTTCCGAATGGAATAGTTGCTTTAATGATTAG
Protein
MELTRENSRAMIYYDFRSGLTQKQCVDRMISAFGDEAPSKTTIYRWFAEFQRGRVKLSDDPRQGRPKTAVTQENVDAVRKLIEEDRHVTYREIQATLDIGMSQIQIILHEQLGVKKLFSRWTPHSLCEEQNAARVTWCVRTLERFHVGSSNAVYNILSGDESWIYAYEPETKNQTRVWVFENELKPTKIVRLRSVEKKIVATFVSKTGHVTTIPLEGQRTVNAEWYASICLPQVVSELRKENCNRRIILHHDNASSHTAHRTKEFLEQENIELVDHPPYSPDLSPTDFYTFPKIKNKLRGQRFSSPEEAVDAYKTAILETPTSEWNSCFND

Summary

Description
Structural component of the gap junctions.
Similarity
Belongs to the pannexin family.
EMBL
DQ443409    ABF51498.1    GBBI01001865    JAC16847.1    GBGD01001983    JAC86906.1    + More
GECL01002811    JAP03313.1    KX930998    APL98291.1    GECU01007301    JAT00406.1    GAKP01015435    JAC43517.1    NIVC01001798    PAA63957.1    DQ174779    ABA55502.1    NIVC01001731    PAA64652.1    AM906136    CAP20050.1    KX931001    APL98294.1    GALX01005282    JAB63184.1    U49974    AAC52011.1    AM906135    CAP20049.1    AM231072    CAJ76986.1    AM906133    CAP20047.1    AM231082    CAJ76996.1    AM231079    CAJ76993.1    AM231080    CAJ76994.1    AM231070    CAJ76984.1    NSIT01000395    PJE77748.1    AM231069    CAJ76983.1    AM231074    CAJ76988.1    AM906145    CAP20059.1    AM906142    AM906144    CAP20056.1    AM906154    CAP20068.1    LBMM01023556    KMQ82700.1    NIVC01000364    PAA84702.1    GAHY01000550    JAA76960.1    LBMM01023216    KMQ82764.1    KX930994    APL98287.1    GBBI01001710    JAC17002.1    GQ398105    ADB28039.1    AM906141    CAP20055.1    KX930999    APL98292.1    GFTR01005295    JAW11131.1    HACA01020102    CDW37463.1    NEVH01008208    PNF34637.1    AM906151    AM906152    CAP20065.1    NEVH01020327    PNF21945.1    AM906137    CAP20051.1    GBBI01001812    JAC16900.1    NIVC01001708    NIVC01001487    NIVC01000426    NIVC01000107    PAA64861.1    PAA67372.1    PAA83241.1    PAA90594.1    NEVH01027114    NEVH01027075    NEVH01026089    NEVH01026087    NEVH01024426    NEVH01021956    NEVH01021925    NEVH01015301    NEVH01013964    NEVH01013194    NEVH01011885    NEVH01009393    NEVH01007824    NEVH01007823    NEVH01006721    NEVH01006578    NEVH01005888    NEVH01005885    NEVH01005277    NEVH01002149    NEVH01001358    PNF13652.1    PNF13785.1    PNF14826.1    PNF14870.1    PNF17130.1    PNF18970.1    PNF19346.1    PNF27270.1    PNF28165.1    PNF28197.1    PNF30137.1    PNF31284.1    PNF33174.1    PNF35196.1    PNF35254.1    PNF37314.1    PNF37715.1    PNF38363.1    PNF38519.1    PNF39139.1    PNF42450.1    PNF42722.1    NEVH01000249    PNF43951.1    NEVH01020956    NEVH01016344    NEVH01006723    NEVH01003746    PNF20350.1    PNF25331.1    PNF37025.1    PNF40184.1    NIVC01000831    PAA76287.1    KX931000    APL98293.1    GECU01035151    JAS72555.1    KL367603    KFD62063.1    KL363185    KFD58269.1    AM906139    CAP20053.1    GAHY01000734    JAA76776.1    LBMM01011272    KMQ86923.1    KL363182    KFD59075.1    GAHY01001054    JAA76456.1    KL363191    KFD56881.1    KL367509    KFD67959.1    NEVH01018383    PNF23469.1    LBMM01005538    KMQ91440.1    GBGD01002089    JAC86800.1    AM906140    CAP20054.1    NEVH01002553    PNF42057.1    L06041    U11652    AAA28265.1    AAC46947.1    NEVH01025141    PNF15743.1    KX930995    APL98288.1    GFTR01005334    JAW11092.1    KL363189    KFD57228.1    GFDG01000031    JAV18768.1    NIVC01002911    PAA54417.1    KL367526    KFD66295.1    U11650    AAC46945.1    KL363194    KFD56261.1    GFAC01005487    JAT93701.1    LBMM01010241    KMQ87583.1    KL363222    KL367507    KFD52867.1    KFD68203.1    GAHY01001080    JAA76430.1    GFDG01000909    JAV17890.1    GBGD01001947    JAC86942.1    GBGD01001923    JAC86966.1    KL363276    KFD49184.1    LBMM01017492    KMQ84067.1    U11654    AAC46948.1    KX930996    APL98289.1   
Pfam
PF13358   DDE_3        + More
PF17906   HTH_48
PF01359   Transposase_1
PF00876   Innexin
Interpro
IPR038717   Tc1-like_DDE_dom        + More
IPR041426   Mos1_HTH       
IPR001888   Transposase_1       
IPR038765   Papain-like_cys_pep_sf       
IPR000990   Innexin       
SUPFAM
SSF54001   SSF54001       
PDB
5HOO     E-value=1.11626e-27,     Score=306

Ontologies

Topology

Subcellular location
Cell membrane  
Cell junction  
Gap junction  
Length:
331
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00145
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.04316
outside
1  -  331
 
 

Population Genetic Test Statistics

Pi
171.383585
Theta
81.254475
Tajima's D
3.164358
CLR
0.537547
CSRT
0.985200739963002
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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